HEADER VIRAL PROTEIN/DNA 18-SEP-12 4H5Q TITLE CRYSTAL STRUCTURE OF RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN TITLE 2 HEXAMER BOUND TO SINGLE-STRANDED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 30-MER POLY(T) DNA; COMPND 7 CHAIN: D; COMPND 8 FRAGMENT: SEE REMARK 999; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RIFT VALLEY FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: RVFV; SOURCE 4 ORGANISM_TAXID: 11588; SOURCE 5 STRAIN: ZH-501; SOURCE 6 GENE: N; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 AI/PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES KEYWDS NUCLEOCAPSID PROTEIN, N PROTEIN, RIBONUCLEOPROTEIN, VIRAL KEYWDS 2 NUCLEOPROTEIN, RNA BINDING, VIRUS, RNP, VIRAL PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.D.RAYMOND,J.L.SMITH REVDAT 4 20-SEP-23 4H5Q 1 REMARK REVDAT 3 05-DEC-12 4H5Q 1 JRNL REVDAT 2 21-NOV-12 4H5Q 1 JRNL REVDAT 1 07-NOV-12 4H5Q 0 JRNL AUTH D.D.RAYMOND,M.E.PIPER,S.R.GERRARD,G.SKINIOTIS,J.L.SMITH JRNL TITL PHLEBOVIRUSES ENCAPSIDATE THEIR GENOMES BY SEQUESTERING RNA JRNL TITL 2 BASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 19208 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23129612 JRNL DOI 10.1073/PNAS.1213553109 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2778 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2315 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2623 REMARK 3 BIN R VALUE (WORKING SET) : 0.2294 REMARK 3 BIN FREE R VALUE : 0.2658 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5698 REMARK 3 NUCLEIC ACID ATOMS : 277 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92090 REMARK 3 B22 (A**2) : -0.92090 REMARK 3 B33 (A**2) : 1.84180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.517 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.301 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.982 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.300 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6113 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8308 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2920 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 140 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 862 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6113 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 785 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7043 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|4 - 33} REMARK 3 ORIGIN FOR THE GROUP (A): 16.2195 40.6898 -15.4384 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: -0.0978 REMARK 3 T33: 0.1579 T12: 0.1934 REMARK 3 T13: 0.0228 T23: -0.0946 REMARK 3 L TENSOR REMARK 3 L11: 2.7221 L22: 0.4704 REMARK 3 L33: 2.8261 L12: -0.4721 REMARK 3 L13: 1.1912 L23: -0.3832 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.0335 S13: 0.0183 REMARK 3 S21: -0.0926 S22: -0.0230 S23: -0.3708 REMARK 3 S31: 0.3354 S32: 0.4288 S33: -0.0551 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|34 - 117} REMARK 3 ORIGIN FOR THE GROUP (A): -10.4424 11.6158 -9.6972 REMARK 3 T TENSOR REMARK 3 T11: -0.0381 T22: -0.1063 REMARK 3 T33: -0.0874 T12: 0.1027 REMARK 3 T13: -0.0144 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 4.6162 L22: 4.2534 REMARK 3 L33: 2.2648 L12: -2.5167 REMARK 3 L13: 1.2848 L23: 0.2601 REMARK 3 S TENSOR REMARK 3 S11: -0.1975 S12: -0.5263 S13: -0.0720 REMARK 3 S21: 0.2508 S22: 0.2528 S23: -0.2304 REMARK 3 S31: -0.1740 S32: -0.1003 S33: -0.0553 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|118 - 245} REMARK 3 ORIGIN FOR THE GROUP (A): -8.3230 23.9740 -29.1767 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: -0.1301 REMARK 3 T33: -0.1156 T12: 0.0209 REMARK 3 T13: 0.0512 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 2.9461 L22: 1.7729 REMARK 3 L33: 2.2113 L12: 0.6181 REMARK 3 L13: -0.8999 L23: -0.1510 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.1416 S13: 0.0443 REMARK 3 S21: -0.1616 S22: 0.0529 S23: -0.1609 REMARK 3 S31: -0.2380 S32: 0.1278 S33: -0.0708 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|5 - 12} REMARK 3 ORIGIN FOR THE GROUP (A): 3.1658 5.2258 -29.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: -0.1362 REMARK 3 T33: -0.0687 T12: -0.0627 REMARK 3 T13: 0.0610 T23: 0.0729 REMARK 3 L TENSOR REMARK 3 L11: -0.1996 L22: 1.7081 REMARK 3 L33: 0.0000 L12: -0.0392 REMARK 3 L13: 0.8444 L23: -0.4615 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.0117 S13: -0.0131 REMARK 3 S21: 0.0303 S22: 0.0289 S23: -0.0451 REMARK 3 S31: -0.0206 S32: 0.0137 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {B|17 - 34} REMARK 3 ORIGIN FOR THE GROUP (A): -22.1391 5.1040 -18.4349 REMARK 3 T TENSOR REMARK 3 T11: -0.0688 T22: -0.0357 REMARK 3 T33: 0.0023 T12: 0.1371 REMARK 3 T13: 0.0051 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0958 L22: 4.0010 REMARK 3 L33: 0.2158 L12: 0.9377 REMARK 3 L13: 0.2780 L23: 0.4750 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.0769 S13: -0.2150 REMARK 3 S21: -0.0066 S22: 0.0582 S23: 0.0990 REMARK 3 S31: 0.0176 S32: -0.2448 S33: -0.0805 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|35 - 127} REMARK 3 ORIGIN FOR THE GROUP (A): -48.1862 14.9733 -12.4162 REMARK 3 T TENSOR REMARK 3 T11: -0.0739 T22: -0.0970 REMARK 3 T33: -0.0359 T12: 0.0545 REMARK 3 T13: 0.0291 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.7021 L22: 3.2340 REMARK 3 L33: 3.2134 L12: -0.4260 REMARK 3 L13: -0.5720 L23: -0.1840 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: -0.0904 S13: 0.0789 REMARK 3 S21: 0.1983 S22: -0.1129 S23: -0.1020 REMARK 3 S31: -0.0385 S32: 0.0578 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|128 - 245} REMARK 3 ORIGIN FOR THE GROUP (A): -35.7212 16.1514 -31.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.0243 T22: -0.0888 REMARK 3 T33: -0.1514 T12: 0.0717 REMARK 3 T13: 0.0450 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 3.5558 L22: 2.2521 REMARK 3 L33: 1.5724 L12: -0.3241 REMARK 3 L13: 0.1725 L23: -0.3980 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.1197 S13: 0.0446 REMARK 3 S21: -0.0425 S22: -0.0674 S23: -0.1761 REMARK 3 S31: 0.0507 S32: 0.0490 S33: 0.0288 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {C|4 - 33} REMARK 3 ORIGIN FOR THE GROUP (A): 0.1029 80.9106 -20.0335 REMARK 3 T TENSOR REMARK 3 T11: 0.0565 T22: -0.0510 REMARK 3 T33: -0.0436 T12: 0.0236 REMARK 3 T13: -0.0023 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.7102 L22: 1.3309 REMARK 3 L33: 0.3396 L12: -1.6366 REMARK 3 L13: 2.4722 L23: -0.2751 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: 0.2781 S13: 0.1922 REMARK 3 S21: -0.0549 S22: 0.0024 S23: -0.0611 REMARK 3 S31: -0.1233 S32: 0.1767 S33: 0.0734 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {C|34 - 112} REMARK 3 ORIGIN FOR THE GROUP (A): 10.4357 46.2816 -6.3399 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: -0.1220 REMARK 3 T33: -0.0802 T12: 0.1328 REMARK 3 T13: -0.0825 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 4.1557 L22: 4.6556 REMARK 3 L33: 3.2846 L12: 1.3978 REMARK 3 L13: -0.2353 L23: 0.8519 REMARK 3 S TENSOR REMARK 3 S11: -0.1490 S12: -0.5046 S13: 0.1611 REMARK 3 S21: 0.4601 S22: 0.0529 S23: -0.6060 REMARK 3 S31: 0.3261 S32: 0.2297 S33: 0.0961 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {C|113 - 245} REMARK 3 ORIGIN FOR THE GROUP (A): 4.1126 50.5427 -28.2454 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: -0.2258 REMARK 3 T33: -0.1958 T12: 0.0625 REMARK 3 T13: 0.0420 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 3.3680 L22: 4.4628 REMARK 3 L33: 4.1617 L12: 0.7044 REMARK 3 L13: -0.7109 L23: 0.8122 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: -0.0113 S13: 0.1376 REMARK 3 S21: -0.2093 S22: 0.0682 S23: -0.1042 REMARK 3 S31: -0.2862 S32: -0.0075 S33: 0.0173 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 94.085 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : 0.77900 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 350 MM SODIUM CHLORIDE, REMARK 280 100 MM BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.09667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.19333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.09667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 174.19333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.09667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 174.19333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 87.09667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 174.19333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -54.32000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 94.08500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT D 1 C3' - O3' - P ANGL. DEV. = 13.5 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 7 C4 - C5 - C7 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 8 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 9 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 9 C4 - C5 - C7 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT D 9 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 10 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT D 11 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT D 12 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 12 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT D 13 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 13 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 123 -50.53 -29.66 REMARK 500 ILE A 209 119.41 78.36 REMARK 500 ILE B 209 120.41 71.76 REMARK 500 PRO C 97 -159.67 -83.87 REMARK 500 ILE C 209 109.72 71.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H5L RELATED DB: PDB REMARK 900 RELATED ID: 4H5M RELATED DB: PDB REMARK 900 RELATED ID: 4H5O RELATED DB: PDB REMARK 900 RELATED ID: 4H5P RELATED DB: PDB REMARK 900 RELATED ID: 4H6F RELATED DB: PDB REMARK 900 RELATED ID: 4H6G RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 EACH DNA CHAIN IS MODELED WITH ONLY 14 BASES. ADDITIONAL BASES IN REMARK 999 THE DNA STRAND ARE SUPPLIED BY SYMMETRY. DBREF 4H5Q A 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 DBREF 4H5Q B 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 DBREF 4H5Q C 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 DBREF 4H5Q D 1 14 PDB 4H5Q 4H5Q 1 14 SEQRES 1 A 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 A 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 A 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 A 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 A 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 A 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 A 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 A 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 A 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 A 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 A 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 A 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 A 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 A 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 A 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 A 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 A 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 A 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 A 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 B 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 B 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 B 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 B 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 B 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 B 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 B 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 B 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 B 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 B 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 B 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 B 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 B 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 B 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 B 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 B 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 B 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 B 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 B 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 C 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 C 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 C 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 C 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 C 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 C 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 C 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 C 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 C 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 C 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 C 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 C 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 C 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 C 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 C 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 C 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 C 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 C 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 C 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 D 14 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 D 14 DT FORMUL 5 HOH *56(H2 O) HELIX 1 1 LEU A 7 GLN A 14 1 8 HELIX 2 2 ASP A 17 ALA A 29 1 13 HELIX 3 3 ASP A 34 GLY A 47 1 14 HELIX 4 4 ASP A 49 GLY A 65 1 17 HELIX 5 5 LYS A 67 MET A 72 1 6 HELIX 6 6 SER A 76 LYS A 91 1 16 HELIX 7 7 THR A 103 LEU A 111 1 9 HELIX 8 8 LEU A 111 SER A 123 1 13 HELIX 9 9 GLU A 124 LEU A 126 5 3 HELIX 10 10 THR A 129 SER A 137 1 9 HELIX 11 11 PRO A 141 MET A 145 5 5 HELIX 12 12 HIS A 146 VAL A 153 5 8 HELIX 13 13 PRO A 158 ASN A 181 1 24 HELIX 14 14 PRO A 182 ARG A 185 5 4 HELIX 15 15 THR A 188 ASN A 205 1 18 HELIX 16 16 SER A 210 PHE A 221 1 12 HELIX 17 17 SER A 231 THR A 243 1 13 HELIX 18 18 TYR B 4 ALA B 15 1 12 HELIX 19 19 ASP B 17 ALA B 29 1 13 HELIX 20 20 ASP B 34 GLY B 47 1 14 HELIX 21 21 ASP B 49 GLY B 65 1 17 HELIX 22 22 LYS B 67 MET B 72 1 6 HELIX 23 23 SER B 76 LYS B 91 1 16 HELIX 24 24 THR B 103 LEU B 111 1 9 HELIX 25 25 LEU B 111 SER B 123 1 13 HELIX 26 26 GLU B 124 LEU B 126 5 3 HELIX 27 27 THR B 129 SER B 137 1 9 HELIX 28 28 PRO B 141 MET B 145 5 5 HELIX 29 29 HIS B 146 VAL B 153 5 8 HELIX 30 30 PRO B 158 ASN B 181 1 24 HELIX 31 31 PRO B 182 ARG B 187 5 6 HELIX 32 32 THR B 188 ASN B 205 1 18 HELIX 33 33 SER B 210 PHE B 221 1 12 HELIX 34 34 SER B 231 THR B 243 1 13 HELIX 35 35 TYR C 4 GLN C 14 1 11 HELIX 36 36 ASP C 17 ALA C 29 1 13 HELIX 37 37 ASP C 34 GLY C 47 1 14 HELIX 38 38 ASP C 49 GLY C 65 1 17 HELIX 39 39 LYS C 67 MET C 72 1 6 HELIX 40 40 SER C 76 LYS C 91 1 16 HELIX 41 41 THR C 103 LEU C 111 1 9 HELIX 42 42 LEU C 111 SER C 123 1 13 HELIX 43 43 GLU C 124 LEU C 126 5 3 HELIX 44 44 THR C 129 SER C 137 1 9 HELIX 45 45 PRO C 141 MET C 145 5 5 HELIX 46 46 HIS C 146 VAL C 153 5 8 HELIX 47 47 PRO C 158 ASN C 181 1 24 HELIX 48 48 PRO C 182 ARG C 185 5 4 HELIX 49 49 THR C 188 ASN C 205 1 18 HELIX 50 50 SER C 210 PHE C 221 1 12 HELIX 51 51 SER C 231 THR C 243 1 13 CRYST1 108.640 108.640 261.290 90.00 90.00 120.00 P 64 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009205 0.005314 0.000000 0.00000 SCALE2 0.000000 0.010629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003827 0.00000