HEADER TRANSFERASE 19-SEP-12 4H6E TITLE TRNA-GUANINE TRANSGLYCOSYLASE Y106F, C158V, V233G MUTANT APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE(3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D-ZM-Y106F_C158V_V233G KEYWDS SUBSTRATE SPECIFICITY, BACTERIAL TGT, TRANSFERASE, PREQ1, TRNA, KEYWDS 2 QUEUINE, GUANINE EXCHANGE ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR I.BIELA,N.TIDTEN-LUKSCH,A.HEINE,K.REUTER,G.KLEBE REVDAT 3 20-SEP-23 4H6E 1 REMARK SEQADV LINK REVDAT 2 17-JUL-13 4H6E 1 JRNL REVDAT 1 07-NOV-12 4H6E 0 JRNL AUTH I.BIELA,N.TIDTEN-LUKSCH,F.IMMEKUS,S.GLINCA,T.X.NGUYEN, JRNL AUTH 2 H.D.GERBER,A.HEINE,G.KLEBE,K.REUTER JRNL TITL INVESTIGATION OF SPECIFICITY DETERMINANTS IN BACTERIAL JRNL TITL 2 TRNA-GUANINE TRANSGLYCOSYLASE REVEALS QUEUINE, THE SUBSTRATE JRNL TITL 3 OF ITS EUCARYOTIC COUNTERPART, AS INHIBITOR. JRNL REF PLOS ONE V. 8 64240 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23704982 JRNL DOI 10.1371/JOURNAL.PONE.0064240 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 72492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3931 - 3.4203 0.91 4963 141 0.1562 0.1852 REMARK 3 2 3.4203 - 2.7157 0.95 5116 145 0.1533 0.1506 REMARK 3 3 2.7157 - 2.3727 0.96 5125 145 0.1504 0.1913 REMARK 3 4 2.3727 - 2.1558 0.96 5132 146 0.1448 0.1813 REMARK 3 5 2.1558 - 2.0014 0.97 5155 146 0.1356 0.1551 REMARK 3 6 2.0014 - 1.8834 0.96 5174 147 0.1420 0.1660 REMARK 3 7 1.8834 - 1.7891 0.96 5118 145 0.1369 0.1631 REMARK 3 8 1.7891 - 1.7112 0.96 5119 145 0.1491 0.1815 REMARK 3 9 1.7112 - 1.6454 0.96 5089 145 0.1428 0.1687 REMARK 3 10 1.6454 - 1.5886 0.96 5117 145 0.1342 0.1848 REMARK 3 11 1.5886 - 1.5389 0.95 5047 143 0.1372 0.1770 REMARK 3 12 1.5389 - 1.4950 0.94 4999 142 0.1553 0.1707 REMARK 3 13 1.4950 - 1.4556 0.93 4923 140 0.1593 0.1899 REMARK 3 14 1.4556 - 1.4200 0.83 4415 125 0.1783 0.2276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3108 REMARK 3 ANGLE : 1.369 4203 REMARK 3 CHIRALITY : 0.080 445 REMARK 3 PLANARITY : 0.007 558 REMARK 3 DIHEDRAL : 12.954 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0850 -1.7657 17.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0230 REMARK 3 T33: 0.0334 T12: 0.0007 REMARK 3 T13: -0.0016 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.7337 L22: 0.2844 REMARK 3 L33: 0.5238 L12: -0.3372 REMARK 3 L13: 0.3610 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0404 S13: -0.0407 REMARK 3 S21: 0.0095 S22: 0.0053 S23: 0.0017 REMARK 3 S31: 0.0642 S32: 0.0059 S33: -0.0222 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 63:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2428 9.6378 19.7895 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0763 REMARK 3 T33: 0.0632 T12: -0.0010 REMARK 3 T13: -0.0021 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.2655 L22: 0.4595 REMARK 3 L33: 0.9687 L12: -0.0362 REMARK 3 L13: 0.0782 L23: 0.4925 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.1084 S13: 0.2328 REMARK 3 S21: -0.0380 S22: -0.0259 S23: 0.0214 REMARK 3 S31: -0.1209 S32: -0.1138 S33: 0.0502 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 94:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5958 16.2390 23.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0308 REMARK 3 T33: 0.1292 T12: 0.0043 REMARK 3 T13: -0.0242 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5023 L22: 0.8519 REMARK 3 L33: 1.8447 L12: 0.2493 REMARK 3 L13: 0.4433 L23: 0.8038 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: 0.0616 S13: 0.2035 REMARK 3 S21: -0.2728 S22: 0.0551 S23: 0.0272 REMARK 3 S31: -0.5069 S32: -0.0328 S33: 0.0622 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 122:147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7151 18.8573 27.9018 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0923 REMARK 3 T33: 0.1656 T12: 0.0442 REMARK 3 T13: -0.0258 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.5460 L22: 0.6030 REMARK 3 L33: 3.6966 L12: 0.9273 REMARK 3 L13: 0.9904 L23: 0.9694 REMARK 3 S TENSOR REMARK 3 S11: -0.1815 S12: 0.0650 S13: 0.5086 REMARK 3 S21: -0.1519 S22: -0.0430 S23: 0.4189 REMARK 3 S31: -0.5872 S32: -0.3581 S33: -0.5238 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 148:188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3605 16.5282 31.4399 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0357 REMARK 3 T33: 0.0538 T12: 0.0042 REMARK 3 T13: 0.0013 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.9617 L22: 0.9977 REMARK 3 L33: 0.6160 L12: 0.3557 REMARK 3 L13: 0.3231 L23: 0.4979 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0105 S13: 0.1361 REMARK 3 S21: -0.0218 S22: 0.0473 S23: 0.0028 REMARK 3 S31: -0.1372 S32: 0.0021 S33: 0.0248 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 189:236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6936 9.9744 29.7002 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0164 REMARK 3 T33: 0.0196 T12: 0.0092 REMARK 3 T13: -0.0101 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.4536 L22: 1.2885 REMARK 3 L33: 1.0531 L12: 0.1215 REMARK 3 L13: -0.0838 L23: 0.0776 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: -0.0465 S13: 0.0632 REMARK 3 S21: 0.0120 S22: 0.0128 S23: -0.0647 REMARK 3 S31: -0.0397 S32: 0.0592 S33: -0.0246 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 237:264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3209 9.1886 21.1506 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0472 REMARK 3 T33: 0.0643 T12: -0.0020 REMARK 3 T13: 0.0146 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.0827 L22: 0.7573 REMARK 3 L33: 1.2622 L12: -0.1548 REMARK 3 L13: 0.0547 L23: 0.2695 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: 0.0202 S13: 0.0892 REMARK 3 S21: 0.0013 S22: 0.0411 S23: -0.1244 REMARK 3 S31: -0.1561 S32: 0.1143 S33: -0.0442 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 265:304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2760 10.6538 4.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0458 REMARK 3 T33: 0.0669 T12: 0.0025 REMARK 3 T13: -0.0002 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.4599 L22: 0.0973 REMARK 3 L33: 1.1817 L12: -0.2178 REMARK 3 L13: 0.7511 L23: -0.3459 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.0461 S13: 0.0526 REMARK 3 S21: 0.0332 S22: 0.0424 S23: 0.0176 REMARK 3 S31: -0.1343 S32: 0.0026 S33: 0.0830 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 305:339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5150 6.7953 -10.4298 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.0524 REMARK 3 T33: 0.0393 T12: 0.0019 REMARK 3 T13: 0.0053 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.9185 L22: 1.0189 REMARK 3 L33: 1.0774 L12: -0.1336 REMARK 3 L13: 0.0394 L23: -0.0230 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0686 S13: -0.0149 REMARK 3 S21: -0.0960 S22: -0.0256 S23: -0.0951 REMARK 3 S31: 0.0940 S32: 0.1211 S33: 0.0052 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 340:383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3742 1.2832 4.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0611 REMARK 3 T33: 0.0555 T12: 0.0163 REMARK 3 T13: 0.0051 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4068 L22: 0.2923 REMARK 3 L33: 0.3844 L12: -0.2472 REMARK 3 L13: 0.3899 L23: -0.1866 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.1661 S13: 0.0751 REMARK 3 S21: -0.0292 S22: -0.0488 S23: -0.1237 REMARK 3 S31: 0.0555 S32: 0.1120 S33: -0.0254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 113.15 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.04600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 1 MM DTT, 10% DMSO, 12% REMARK 280 PEG 8000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.51900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.39800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.51900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.39800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 656 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 128 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 113 OG REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 MET A 134 CG SD CE REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 267 O HOH A 661 2.08 REMARK 500 O HOH A 774 O HOH A 788 2.11 REMARK 500 OE2 GLU A 81 O HOH A 701 2.17 REMARK 500 O HOH A 772 O HOH A 796 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 GOL A 407 O HOH A 736 4556 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 -95.37 -78.86 REMARK 500 ALA A 48 59.73 33.99 REMARK 500 LEU A 114 -75.61 -74.08 REMARK 500 THR A 115 86.15 61.21 REMARK 500 SER A 205 -133.45 55.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.4 REMARK 620 3 CYS A 323 SG 114.4 116.6 REMARK 620 4 HIS A 349 ND1 104.9 115.2 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GD0 RELATED DB: PDB REMARK 900 RELATED ID: 4GCX RELATED DB: PDB REMARK 900 RELATED ID: 4E2V RELATED DB: PDB REMARK 900 RELATED ID: 3BL3 RELATED DB: PDB REMARK 900 RELATED ID: 3BLD RELATED DB: PDB REMARK 900 RELATED ID: 3BLL RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THR312 TO LYS CONFLICT IN UNP ENTRY P28720 DBREF 4H6E A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 4H6E PHE A 106 UNP P28720 TYR 106 ENGINEERED MUTATION SEQADV 4H6E VAL A 158 UNP P28720 CYS 158 ENGINEERED MUTATION SEQADV 4H6E GLY A 233 UNP P28720 VAL 233 ENGINEERED MUTATION SEQADV 4H6E LYS A 312 UNP P28720 THR 312 SEE REMARK 999 SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY PHE GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU VAL THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA GLY GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET GOL A 401 6 HET ZN A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 7(C3 H8 O3) FORMUL 3 ZN ZN 2+ FORMUL 10 HOH *421(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 ASN A 70 ARG A 77 1 8 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 SER A 112 1 9 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 ARG A 189 1 26 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 ARG A 274 1 11 HELIX 13 13 THR A 285 ASN A 290 5 6 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 9 ALA A 41 MET A 43 0 SHEET 2 B 9 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 9 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 9 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 9 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 B 9 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 9 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 9 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 9 B 9 VAL A 45 GLY A 46 1 N GLY A 46 O LEU A 68 SHEET 1 C 3 LYS A 116 GLN A 117 0 SHEET 2 C 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 ARG A 132 LEU A 135 -1 O HIS A 133 N PHE A 124 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 320 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 402 1555 1555 2.30 LINK ND1 HIS A 349 ZN ZN A 402 1555 1555 2.12 CISPEP 1 THR A 39 PRO A 40 0 2.33 CISPEP 2 ARG A 77 PRO A 78 0 6.64 CISPEP 3 TYR A 161 PRO A 162 0 -1.45 CISPEP 4 VAL A 262 GLY A 263 0 -3.20 SITE 1 AC1 8 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC1 8 ASP A 96 ARG A 97 HOH A 801 HOH A 837 SITE 1 AC2 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC3 7 GLN A 117 ARG A 174 PRO A 252 ASP A 254 SITE 2 AC3 7 LYS A 255 HOH A 530 HOH A 648 SITE 1 AC4 7 GLU A 317 LYS A 360 PHE A 373 ARG A 380 SITE 2 AC4 7 HOH A 529 HOH A 785 HOH A 797 SITE 1 AC5 8 ALA A 20 ARG A 21 ARG A 82 ALA A 305 SITE 2 AC5 8 SER A 308 HIS A 332 ARG A 336 HOH A 873 SITE 1 AC6 7 ARG A 34 GLY A 148 SER A 149 ASP A 150 SITE 2 AC6 7 ASN A 195 HOH A 895 HOH A 916 SITE 1 AC7 11 PHE A 14 SER A 15 PHE A 16 GLU A 119 SITE 2 AC7 11 ARG A 174 ARG A 177 ASP A 254 LYS A 255 SITE 3 AC7 11 HOH A 552 HOH A 631 HOH A 736 SITE 1 AC8 8 PHE A 106 GLY A 229 GLY A 230 LEU A 231 SITE 2 AC8 8 MET A 260 HOH A 732 HOH A 886 HOH A 921 CRYST1 91.038 64.796 70.530 90.00 96.13 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010984 0.000000 0.001180 0.00000 SCALE2 0.000000 0.015433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014260 0.00000