HEADER OXIDOREDUCTASE 19-SEP-12 4H6Q TITLE STRUCTURE OF OXIDIZED DEINOCOCCUS RADIODURANS PROLINE DEHYDROGENASE TITLE 2 COMPLEXED WITH L-TETRAHYDROFUROIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A, C; COMPND 4 EC: 1.5.99.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 GENE: DR_0814, PROLINE DEHYDROGENASE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS BETA8-ALPHA8-BARREL, FLAVOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MIN,J.J.TANNER REVDAT 3 20-SEP-23 4H6Q 1 REMARK SEQADV REVDAT 2 02-JAN-13 4H6Q 1 JRNL REVDAT 1 28-NOV-12 4H6Q 0 JRNL AUTH M.LUO,B.W.ARENTSON,D.SRIVASTAVA,D.F.BECKER,J.J.TANNER JRNL TITL CRYSTAL STRUCTURES AND KINETICS OF MONOFUNCTIONAL PROLINE JRNL TITL 2 DEHYDROGENASE PROVIDE INSIGHT INTO SUBSTRATE RECOGNITION AND JRNL TITL 3 CONFORMATIONAL CHANGES ASSOCIATED WITH FLAVIN REDUCTION AND JRNL TITL 4 PRODUCT RELEASE. JRNL REF BIOCHEMISTRY V. 51 10099 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23151026 JRNL DOI 10.1021/BI301312F REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 124194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 11592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 78.2090 - 4.2219 0.88 6805 314 0.1657 0.1603 REMARK 3 2 4.2219 - 3.3510 0.93 7050 416 0.1451 0.1642 REMARK 3 3 3.3510 - 2.9274 0.94 7197 368 0.1611 0.1940 REMARK 3 4 2.9274 - 2.6597 0.88 6697 411 0.1554 0.1830 REMARK 3 5 2.6597 - 2.4691 0.94 7149 406 0.1488 0.1740 REMARK 3 6 2.4691 - 2.3235 0.96 7331 367 0.1375 0.1859 REMARK 3 7 2.3235 - 2.2071 0.96 7357 382 0.1281 0.1732 REMARK 3 8 2.2071 - 2.1110 0.97 7417 352 0.1264 0.1648 REMARK 3 9 2.1110 - 2.0298 0.98 7489 397 0.1272 0.1671 REMARK 3 10 2.0298 - 1.9597 0.93 7122 389 0.1231 0.1780 REMARK 3 11 1.9597 - 1.8984 0.94 7203 370 0.1217 0.1735 REMARK 3 12 1.8984 - 1.8442 0.96 7353 385 0.1177 0.1758 REMARK 3 13 1.8442 - 1.7956 0.97 7366 462 0.1197 0.1707 REMARK 3 14 1.7956 - 1.7518 0.98 7433 429 0.1303 0.1752 REMARK 3 15 1.7518 - 1.7120 0.98 7480 398 0.1301 0.1714 REMARK 3 16 1.7120 - 1.6755 0.98 7568 369 0.1327 0.1783 REMARK 3 17 1.6755 - 1.6420 0.98 7530 350 0.1292 0.1729 REMARK 3 18 1.6420 - 1.6110 0.98 7653 366 0.1298 0.1643 REMARK 3 19 1.6110 - 1.5823 0.96 7317 421 0.1354 0.1889 REMARK 3 20 1.5823 - 1.5554 0.91 7006 367 0.1541 0.1875 REMARK 3 21 1.5554 - 1.5303 0.95 7234 385 0.1598 0.2000 REMARK 3 22 1.5303 - 1.5068 0.97 7512 322 0.1677 0.2208 REMARK 3 23 1.5068 - 1.4846 0.97 7343 369 0.1836 0.2398 REMARK 3 24 1.4846 - 1.4637 0.97 7500 405 0.1934 0.2280 REMARK 3 25 1.4637 - 1.4439 0.97 7456 393 0.1924 0.2412 REMARK 3 26 1.4439 - 1.4252 0.98 7508 381 0.2072 0.2447 REMARK 3 27 1.4252 - 1.4074 0.98 7485 412 0.2199 0.2657 REMARK 3 28 1.4074 - 1.3904 0.98 7405 407 0.2294 0.2534 REMARK 3 29 1.3904 - 1.3742 0.98 7619 409 0.2499 0.3083 REMARK 3 30 1.3742 - 1.3590 0.91 6897 390 0.2590 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4726 REMARK 3 ANGLE : 1.754 6451 REMARK 3 CHIRALITY : 0.102 712 REMARK 3 PLANARITY : 0.008 822 REMARK 3 DIHEDRAL : 18.953 1856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : BEAMLINE OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124194 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.359 REMARK 200 RESOLUTION RANGE LOW (A) : 78.209 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2G37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 25% (W/V) REMARK 280 PEG3350, 0.1 MM BIS-TRIS, 400 MM TETRAHYDROFURAN-2-CARBOXYLIC REMARK 280 ACID, PH 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.23450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.19650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.73100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.19650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.23450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.73100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 TYR A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 ARG A 298 REMARK 465 ASN A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 PHE A 302 REMARK 465 VAL A 303 REMARK 465 VAL A 304 REMARK 465 GLN A 305 REMARK 465 GLY A 306 REMARK 465 MET A 307 REMARK 465 LEU A 308 REMARK 465 LYS A 309 REMARK 465 GLY A 310 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 ASP C 3 REMARK 465 GLN C 4 REMARK 465 LEU C 5 REMARK 465 TYR C 6 REMARK 465 ARG C 7 REMARK 465 LYS C 8 REMARK 465 ALA C 9 REMARK 465 VAL C 10 REMARK 465 LEU C 11 REMARK 465 THR C 12 REMARK 465 VAL C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 ARG C 16 REMARK 465 ARG C 298 REMARK 465 ASN C 299 REMARK 465 ALA C 300 REMARK 465 ALA C 301 REMARK 465 PHE C 302 REMARK 465 VAL C 303 REMARK 465 VAL C 304 REMARK 465 GLN C 305 REMARK 465 GLY C 306 REMARK 465 MET C 307 REMARK 465 LEU C 308 REMARK 465 LYS C 309 REMARK 465 GLY C 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 17 CG CD REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 VAL A 19 CG1 CG2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 262 NE CZ NH1 NH2 REMARK 470 ARG A 283 CD NE CZ NH1 NH2 REMARK 470 PRO C 17 CG CD REMARK 470 GLN C 18 CG CD OE1 NE2 REMARK 470 VAL C 19 CG1 CG2 REMARK 470 GLU C 20 CG CD OE1 OE2 REMARK 470 GLN C 21 CG CD OE1 NE2 REMARK 470 ARG C 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 ARG C 52 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 67 CG OD1 OD2 REMARK 470 LYS C 71 NZ REMARK 470 LYS C 81 CD CE NZ REMARK 470 LYS C 92 CE NZ REMARK 470 LYS C 106 CE NZ REMARK 470 GLU C 108 CG CD OE1 OE2 REMARK 470 ASN C 109 CG OD1 ND2 REMARK 470 GLU C 111 OE1 OE2 REMARK 470 GLU C 147 CG CD OE1 OE2 REMARK 470 GLU C 159 CG CD OE1 OE2 REMARK 470 ARG C 183 NE CZ NH1 NH2 REMARK 470 LYS C 204 CG CD CE NZ REMARK 470 ARG C 213 NE CZ NH1 NH2 REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 262 CZ NH1 NH2 REMARK 470 ARG C 283 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 250 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 137 -150.12 -94.20 REMARK 500 GLU C 137 -148.45 -92.65 REMARK 500 ARG C 183 60.69 34.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFB A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFB C 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H6R RELATED DB: PDB DBREF 4H6Q A 1 310 UNP Q9RW55 Q9RW55_DEIRA 1 310 DBREF 4H6Q C 1 310 UNP Q9RW55 Q9RW55_DEIRA 1 310 SEQADV 4H6Q GLY A -1 UNP Q9RW55 EXPRESSION TAG SEQADV 4H6Q HIS A 0 UNP Q9RW55 EXPRESSION TAG SEQADV 4H6Q GLY C -1 UNP Q9RW55 EXPRESSION TAG SEQADV 4H6Q HIS C 0 UNP Q9RW55 EXPRESSION TAG SEQRES 1 A 312 GLY HIS MET ILE ASP GLN LEU TYR ARG LYS ALA VAL LEU SEQRES 2 A 312 THR VAL ALA GLU ARG PRO GLN VAL GLU GLN LEU ALA ARG SEQRES 3 A 312 GLN LYS MET TRP ASN LEU ALA GLU ARG PHE VAL ALA GLY SEQRES 4 A 312 GLU SER ILE GLU SER ALA ILE GLN ALA VAL GLN ALA LEU SEQRES 5 A 312 GLU ARG ASP GLY ILE ALA GLY ASN LEU ASP LEU LEU GLY SEQRES 6 A 312 GLU PHE ILE ASP SER PRO ALA LYS CYS THR GLU PHE ALA SEQRES 7 A 312 ASP ASP VAL ILE LYS LEU ILE GLU ALA ALA HIS ALA ALA SEQRES 8 A 312 GLY ILE LYS PRO TYR VAL SER ILE LYS LEU SER SER VAL SEQRES 9 A 312 GLY GLN GLY LYS ASP GLU ASN GLY GLU ASP LEU GLY LEU SEQRES 10 A 312 THR ASN ALA ARG ARG ILE ILE ALA LYS ALA LYS GLU TYR SEQRES 11 A 312 GLY GLY PHE ILE CYS LEU ASP MET GLU ASP HIS THR ARG SEQRES 12 A 312 VAL ASP VAL THR LEU GLU GLN PHE ARG THR LEU VAL GLY SEQRES 13 A 312 GLU PHE GLY ALA GLU HIS VAL GLY THR VAL LEU GLN SER SEQRES 14 A 312 TYR LEU TYR ARG SER LEU GLY ASP ARG ALA SER LEU ASP SEQRES 15 A 312 ASP LEU ARG PRO ASN ILE ARG MET VAL LYS GLY ALA TYR SEQRES 16 A 312 LEU GLU PRO ALA THR VAL ALA TYR PRO ASP LYS ALA ASP SEQRES 17 A 312 VAL ASP GLN ASN TYR ARG ARG LEU VAL PHE GLN HIS LEU SEQRES 18 A 312 LYS ALA GLY ASN TYR THR ASN VAL ALA THR HIS ASP GLU SEQRES 19 A 312 ARG ILE ILE ASP ASP VAL LYS ARG PHE VAL LEU ALA HIS SEQRES 20 A 312 GLY ILE GLY LYS ASP ALA PHE GLU PHE GLN MET LEU TYR SEQRES 21 A 312 GLY ILE ARG ARG ASP LEU GLN LYS GLN LEU ALA ALA GLU SEQRES 22 A 312 GLY TYR ARG VAL ARG VAL TYR LEU PRO TYR GLY ARG ASP SEQRES 23 A 312 TRP TYR ALA TYR PHE SER ARG ARG ILE ALA GLU THR PRO SEQRES 24 A 312 ARG ASN ALA ALA PHE VAL VAL GLN GLY MET LEU LYS GLY SEQRES 1 C 312 GLY HIS MET ILE ASP GLN LEU TYR ARG LYS ALA VAL LEU SEQRES 2 C 312 THR VAL ALA GLU ARG PRO GLN VAL GLU GLN LEU ALA ARG SEQRES 3 C 312 GLN LYS MET TRP ASN LEU ALA GLU ARG PHE VAL ALA GLY SEQRES 4 C 312 GLU SER ILE GLU SER ALA ILE GLN ALA VAL GLN ALA LEU SEQRES 5 C 312 GLU ARG ASP GLY ILE ALA GLY ASN LEU ASP LEU LEU GLY SEQRES 6 C 312 GLU PHE ILE ASP SER PRO ALA LYS CYS THR GLU PHE ALA SEQRES 7 C 312 ASP ASP VAL ILE LYS LEU ILE GLU ALA ALA HIS ALA ALA SEQRES 8 C 312 GLY ILE LYS PRO TYR VAL SER ILE LYS LEU SER SER VAL SEQRES 9 C 312 GLY GLN GLY LYS ASP GLU ASN GLY GLU ASP LEU GLY LEU SEQRES 10 C 312 THR ASN ALA ARG ARG ILE ILE ALA LYS ALA LYS GLU TYR SEQRES 11 C 312 GLY GLY PHE ILE CYS LEU ASP MET GLU ASP HIS THR ARG SEQRES 12 C 312 VAL ASP VAL THR LEU GLU GLN PHE ARG THR LEU VAL GLY SEQRES 13 C 312 GLU PHE GLY ALA GLU HIS VAL GLY THR VAL LEU GLN SER SEQRES 14 C 312 TYR LEU TYR ARG SER LEU GLY ASP ARG ALA SER LEU ASP SEQRES 15 C 312 ASP LEU ARG PRO ASN ILE ARG MET VAL LYS GLY ALA TYR SEQRES 16 C 312 LEU GLU PRO ALA THR VAL ALA TYR PRO ASP LYS ALA ASP SEQRES 17 C 312 VAL ASP GLN ASN TYR ARG ARG LEU VAL PHE GLN HIS LEU SEQRES 18 C 312 LYS ALA GLY ASN TYR THR ASN VAL ALA THR HIS ASP GLU SEQRES 19 C 312 ARG ILE ILE ASP ASP VAL LYS ARG PHE VAL LEU ALA HIS SEQRES 20 C 312 GLY ILE GLY LYS ASP ALA PHE GLU PHE GLN MET LEU TYR SEQRES 21 C 312 GLY ILE ARG ARG ASP LEU GLN LYS GLN LEU ALA ALA GLU SEQRES 22 C 312 GLY TYR ARG VAL ARG VAL TYR LEU PRO TYR GLY ARG ASP SEQRES 23 C 312 TRP TYR ALA TYR PHE SER ARG ARG ILE ALA GLU THR PRO SEQRES 24 C 312 ARG ASN ALA ALA PHE VAL VAL GLN GLY MET LEU LYS GLY HET FAD A2001 106 HET TFB A2002 8 HET GOL A2003 6 HET FAD C2001 106 HET TFB C2002 8 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM TFB TETRAHYDROFURAN-2-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 TFB 2(C5 H8 O3) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *475(H2 O) HELIX 1 1 PRO A 17 VAL A 19 5 3 HELIX 2 2 GLU A 20 GLU A 32 1 13 HELIX 3 3 SER A 39 ASP A 53 1 15 HELIX 4 4 SER A 68 ALA A 89 1 22 HELIX 5 5 LYS A 98 VAL A 102 5 5 HELIX 6 6 LEU A 113 TYR A 128 1 16 HELIX 7 7 ASP A 138 THR A 140 5 3 HELIX 8 8 ARG A 141 GLY A 157 1 17 HELIX 9 9 ARG A 171 LEU A 179 1 9 HELIX 10 10 ASP A 180 ARG A 183 5 4 HELIX 11 11 ASP A 203 ALA A 221 1 19 HELIX 12 12 ASP A 231 HIS A 245 1 15 HELIX 13 13 ARG A 261 GLU A 271 1 11 HELIX 14 14 TRP A 285 GLU A 295 1 11 HELIX 15 15 GLN C 18 GLU C 32 1 15 HELIX 16 16 SER C 39 ASP C 53 1 15 HELIX 17 17 SER C 68 ALA C 89 1 22 HELIX 18 18 LYS C 98 VAL C 102 5 5 HELIX 19 19 LEU C 113 TYR C 128 1 16 HELIX 20 20 ASP C 138 THR C 140 5 3 HELIX 21 21 ARG C 141 GLY C 157 1 17 HELIX 22 22 ARG C 171 SER C 178 1 8 HELIX 23 23 LEU C 179 ARG C 183 5 5 HELIX 24 24 ASP C 203 ALA C 221 1 19 HELIX 25 25 ASP C 231 HIS C 245 1 15 HELIX 26 26 ARG C 261 GLU C 271 1 11 HELIX 27 27 TRP C 285 GLU C 295 1 11 SHEET 1 A 9 ALA A 56 LEU A 61 0 SHEET 2 A 9 TYR A 94 ILE A 97 1 O SER A 96 N LEU A 59 SHEET 3 A 9 PHE A 131 LEU A 134 1 O CYS A 133 N ILE A 97 SHEET 4 A 9 VAL A 161 GLN A 166 1 O GLY A 162 N LEU A 134 SHEET 5 A 9 ILE A 186 VAL A 189 1 O ARG A 187 N THR A 163 SHEET 6 A 9 THR A 225 ALA A 228 1 O ASN A 226 N MET A 188 SHEET 7 A 9 PHE A 252 LEU A 257 1 O GLU A 253 N VAL A 227 SHEET 8 A 9 VAL A 275 TYR A 281 1 O TYR A 278 N MET A 256 SHEET 9 A 9 ALA A 56 LEU A 61 1 N ASN A 58 O LEU A 279 SHEET 1 B 2 ASP A 107 GLU A 108 0 SHEET 2 B 2 GLU A 111 ASP A 112 -1 O GLU A 111 N GLU A 108 SHEET 1 C 9 ALA C 56 LEU C 61 0 SHEET 2 C 9 TYR C 94 ILE C 97 1 O TYR C 94 N LEU C 59 SHEET 3 C 9 PHE C 131 LEU C 134 1 O CYS C 133 N ILE C 97 SHEET 4 C 9 VAL C 161 GLN C 166 1 O GLY C 162 N LEU C 134 SHEET 5 C 9 ILE C 186 VAL C 189 1 O ARG C 187 N THR C 163 SHEET 6 C 9 THR C 225 ALA C 228 1 O ASN C 226 N MET C 188 SHEET 7 C 9 PHE C 252 LEU C 257 1 O GLU C 253 N VAL C 227 SHEET 8 C 9 ARG C 274 TYR C 281 1 O TYR C 278 N MET C 256 SHEET 9 C 9 ALA C 56 LEU C 61 1 N ASN C 58 O LEU C 279 SHEET 1 D 2 ASP C 107 GLU C 108 0 SHEET 2 D 2 GLU C 111 ASP C 112 -1 O GLU C 111 N GLU C 108 SITE 1 AC1 32 ASP A 135 MET A 136 VAL A 164 GLN A 166 SITE 2 AC1 32 ARG A 187 VAL A 189 LYS A 190 GLY A 191 SITE 3 AC1 32 ALA A 192 TYR A 193 ALA A 228 THR A 229 SITE 4 AC1 32 HIS A 230 ASP A 231 GLN A 255 MET A 256 SITE 5 AC1 32 LEU A 257 ILE A 260 TYR A 278 ARG A 292 SITE 6 AC1 32 GLU A 295 PRO A 297 TFB A2002 HOH A2104 SITE 7 AC1 32 HOH A2115 HOH A2128 HOH A2136 HOH A2183 SITE 8 AC1 32 HOH A2210 HOH A2350 HOH A2377 HOH A2380 SITE 1 AC2 8 LYS A 98 ASP A 135 TYR A 278 TYR A 288 SITE 2 AC2 8 ARG A 291 ARG A 292 FAD A2001 HOH A2147 SITE 1 AC3 7 TYR A 94 TYR A 224 GLU A 253 ARG A 276 SITE 2 AC3 7 HOH A2295 HOH A2310 HOH A2362 SITE 1 AC4 30 ASP C 135 MET C 136 VAL C 164 GLN C 166 SITE 2 AC4 30 ARG C 187 VAL C 189 LYS C 190 GLY C 191 SITE 3 AC4 30 ALA C 192 TYR C 193 ALA C 228 THR C 229 SITE 4 AC4 30 HIS C 230 ASP C 231 GLN C 255 MET C 256 SITE 5 AC4 30 LEU C 257 ILE C 260 ARG C 292 GLU C 295 SITE 6 AC4 30 PRO C 297 TFB C2002 HOH C2106 HOH C2110 SITE 7 AC4 30 HOH C2116 HOH C2139 HOH C2190 HOH C2192 SITE 8 AC4 30 HOH C2228 HOH C2263 SITE 1 AC5 8 LYS C 98 ASP C 135 TYR C 278 TYR C 288 SITE 2 AC5 8 ARG C 291 ARG C 292 FAD C2001 HOH C2160 CRYST1 44.469 95.462 136.393 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007332 0.00000