HEADER OXIDOREDUCTASE 20-SEP-12 4H7P TITLE CRYSTAL STRUCTURE OF A PUTATIVE CYTOSOLIC MALATE DEHYDROGENASE FROM TITLE 2 LEISHMANIA MAJOR FRIEDLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 347515; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 GENE: CMDH, LMJF_28_2860; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, LEISHMANIA MAJOR, MALATE DEHYDROGENASE, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4H7P 1 REMARK SEQADV REVDAT 1 10-OCT-12 4H7P 0 JRNL AUTH J.ABENDROTH,B.SANKARAN,B.L.STAKER,L.J.STEWART,P.MYLER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE CYTOSOLIC MALATE JRNL TITL 2 DEHYDROGENASE FROM LEISHMANIA MAJOR FRIEDLIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 146506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 533 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 635 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4629 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4512 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6345 ; 1.656 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10322 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 646 ; 6.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;32.581 ;23.269 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 695 ;11.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;15.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5321 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 981 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 324 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6030 20.0630 62.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0159 REMARK 3 T33: 0.0374 T12: 0.0006 REMARK 3 T13: -0.0044 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.4503 L22: 0.3019 REMARK 3 L33: 0.9175 L12: 0.1748 REMARK 3 L13: -0.3784 L23: -0.0363 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.0742 S13: 0.0242 REMARK 3 S21: -0.0206 S22: 0.0194 S23: 0.0084 REMARK 3 S31: 0.0346 S32: -0.0737 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 324 REMARK 3 RESIDUE RANGE : B 400 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2200 16.4780 95.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0206 REMARK 3 T33: 0.0268 T12: -0.0128 REMARK 3 T13: 0.0096 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4802 L22: 0.2725 REMARK 3 L33: 1.0520 L12: -0.0082 REMARK 3 L13: -0.0996 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0693 S13: 0.0195 REMARK 3 S21: 0.0580 S22: -0.0072 S23: 0.0280 REMARK 3 S31: 0.0339 S32: -0.0025 S33: -0.0130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4H7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 146529 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 24.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 1IZ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALDBIO JCSG+ SCREEN H7: 25% PEG REMARK 280 3350, 200MM AMMONIUM SULPHATE, 100MM BISTRIS PH 5.5; REMARK 280 LEMAA.01212.A.A1.P001468 AT 20MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.83000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 ALA A 213 REMARK 465 LEU A 214 REMARK 465 ASP A 215 REMARK 465 ASP A 216 REMARK 465 ASN A 300 REMARK 465 GLY A 301 REMARK 465 ASP A 302 REMARK 465 LEU A 303 REMARK 465 GLY A 304 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 205 REMARK 465 ARG B 206 REMARK 465 GLU B 207 REMARK 465 ALA B 208 REMARK 465 ILE B 209 REMARK 465 LYS B 210 REMARK 465 ASP B 211 REMARK 465 ASP B 212 REMARK 465 ALA B 213 REMARK 465 LEU B 214 REMARK 465 ASP B 215 REMARK 465 ASP B 216 REMARK 465 ASN B 300 REMARK 465 GLY B 301 REMARK 465 ASP B 302 REMARK 465 LEU B 303 REMARK 465 GLY B 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 MET A 103 CG SD CE REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ASP A 217 CG OD1 OD2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 HIS A 288 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 SER B 2 OG REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 ASP B 99 CG OD1 OD2 REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 THR B 202 OG1 CG2 REMARK 470 ASP B 217 CG OD1 OD2 REMARK 470 GLN B 220 CG CD OE1 NE2 REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 228 O HOH B 798 2.13 REMARK 500 NH1 ARG A 307 O HOH A 823 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 319 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 233 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 233 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 233 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 238 -58.74 -136.56 REMARK 500 ALA B 238 -61.90 -132.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEMAA.01212.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4I1I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PUTATIVE CYTOSOLIC MALATE DEHYDROGENASE FROM REMARK 900 LEISHMANIA MAJOR FRIEDLIN IN COMPLEX WITH NAD DBREF 4H7P A 1 324 UNP Q4Q7X6 Q4Q7X6_LEIMA 1 324 DBREF 4H7P B 1 324 UNP Q4Q7X6 Q4Q7X6_LEIMA 1 324 SEQADV 4H7P MET A -20 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P ALA A -19 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS A -18 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS A -17 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS A -16 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS A -15 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS A -14 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS A -13 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P MET A -12 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLY A -11 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P THR A -10 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P LEU A -9 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLU A -8 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P ALA A -7 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLN A -6 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P THR A -5 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLN A -4 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLY A -3 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P PRO A -2 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLY A -1 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P SER A 0 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P MET B -20 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P ALA B -19 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS B -18 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS B -17 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS B -16 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS B -15 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS B -14 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P HIS B -13 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P MET B -12 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLY B -11 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P THR B -10 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P LEU B -9 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLU B -8 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P ALA B -7 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLN B -6 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P THR B -5 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLN B -4 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLY B -3 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P PRO B -2 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P GLY B -1 UNP Q4Q7X6 EXPRESSION TAG SEQADV 4H7P SER B 0 UNP Q4Q7X6 EXPRESSION TAG SEQRES 1 A 345 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 345 ALA GLN THR GLN GLY PRO GLY SER MET SER ALA VAL LYS SEQRES 3 A 345 VAL ALA VAL THR GLY ALA ALA GLY GLN ILE GLY TYR ALA SEQRES 4 A 345 LEU VAL PRO LEU ILE ALA ARG GLY ALA LEU LEU GLY PRO SEQRES 5 A 345 THR THR PRO VAL GLU LEU ARG LEU LEU ASP ILE GLU PRO SEQRES 6 A 345 ALA LEU LYS ALA LEU ALA GLY VAL GLU ALA GLU LEU GLU SEQRES 7 A 345 ASP CYS ALA PHE PRO LEU LEU ASP LYS VAL VAL VAL THR SEQRES 8 A 345 ALA ASP PRO ARG VAL ALA PHE ASP GLY VAL ALA ILE ALA SEQRES 9 A 345 ILE MET CYS GLY ALA PHE PRO ARG LYS ALA GLY MET GLU SEQRES 10 A 345 ARG LYS ASP LEU LEU GLU MET ASN ALA ARG ILE PHE LYS SEQRES 11 A 345 GLU GLN GLY GLU ALA ILE ALA ALA VAL ALA ALA SER ASP SEQRES 12 A 345 CYS ARG VAL VAL VAL VAL GLY ASN PRO ALA ASN THR ASN SEQRES 13 A 345 ALA LEU ILE LEU LEU LYS SER ALA GLN GLY LYS LEU ASN SEQRES 14 A 345 PRO ARG HIS VAL THR ALA MET THR ARG LEU ASP HIS ASN SEQRES 15 A 345 ARG ALA LEU SER LEU LEU ALA ARG LYS ALA GLY VAL PRO SEQRES 16 A 345 VAL SER GLN VAL ARG ASN VAL ILE ILE TRP GLY ASN HIS SEQRES 17 A 345 SER SER THR GLN VAL PRO ASP THR ASP SER ALA VAL ILE SEQRES 18 A 345 GLY THR THR PRO ALA ARG GLU ALA ILE LYS ASP ASP ALA SEQRES 19 A 345 LEU ASP ASP ASP PHE VAL GLN VAL VAL ARG GLY ARG GLY SEQRES 20 A 345 ALA GLU ILE ILE GLN LEU ARG GLY LEU SER SER ALA MET SEQRES 21 A 345 SER ALA ALA LYS ALA ALA VAL ASP HIS VAL HIS ASP TRP SEQRES 22 A 345 ILE HIS GLY THR PRO GLU GLY VAL TYR VAL SER MET GLY SEQRES 23 A 345 VAL TYR SER ASP GLU ASN PRO TYR GLY VAL PRO SER GLY SEQRES 24 A 345 LEU ILE PHE SER PHE PRO CYS THR CYS HIS ALA GLY GLU SEQRES 25 A 345 TRP THR VAL VAL SER GLY LYS LEU ASN GLY ASP LEU GLY SEQRES 26 A 345 LYS GLN ARG LEU ALA SER THR ILE ALA GLU LEU GLN GLU SEQRES 27 A 345 GLU ARG ALA GLN ALA GLY LEU SEQRES 1 B 345 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 345 ALA GLN THR GLN GLY PRO GLY SER MET SER ALA VAL LYS SEQRES 3 B 345 VAL ALA VAL THR GLY ALA ALA GLY GLN ILE GLY TYR ALA SEQRES 4 B 345 LEU VAL PRO LEU ILE ALA ARG GLY ALA LEU LEU GLY PRO SEQRES 5 B 345 THR THR PRO VAL GLU LEU ARG LEU LEU ASP ILE GLU PRO SEQRES 6 B 345 ALA LEU LYS ALA LEU ALA GLY VAL GLU ALA GLU LEU GLU SEQRES 7 B 345 ASP CYS ALA PHE PRO LEU LEU ASP LYS VAL VAL VAL THR SEQRES 8 B 345 ALA ASP PRO ARG VAL ALA PHE ASP GLY VAL ALA ILE ALA SEQRES 9 B 345 ILE MET CYS GLY ALA PHE PRO ARG LYS ALA GLY MET GLU SEQRES 10 B 345 ARG LYS ASP LEU LEU GLU MET ASN ALA ARG ILE PHE LYS SEQRES 11 B 345 GLU GLN GLY GLU ALA ILE ALA ALA VAL ALA ALA SER ASP SEQRES 12 B 345 CYS ARG VAL VAL VAL VAL GLY ASN PRO ALA ASN THR ASN SEQRES 13 B 345 ALA LEU ILE LEU LEU LYS SER ALA GLN GLY LYS LEU ASN SEQRES 14 B 345 PRO ARG HIS VAL THR ALA MET THR ARG LEU ASP HIS ASN SEQRES 15 B 345 ARG ALA LEU SER LEU LEU ALA ARG LYS ALA GLY VAL PRO SEQRES 16 B 345 VAL SER GLN VAL ARG ASN VAL ILE ILE TRP GLY ASN HIS SEQRES 17 B 345 SER SER THR GLN VAL PRO ASP THR ASP SER ALA VAL ILE SEQRES 18 B 345 GLY THR THR PRO ALA ARG GLU ALA ILE LYS ASP ASP ALA SEQRES 19 B 345 LEU ASP ASP ASP PHE VAL GLN VAL VAL ARG GLY ARG GLY SEQRES 20 B 345 ALA GLU ILE ILE GLN LEU ARG GLY LEU SER SER ALA MET SEQRES 21 B 345 SER ALA ALA LYS ALA ALA VAL ASP HIS VAL HIS ASP TRP SEQRES 22 B 345 ILE HIS GLY THR PRO GLU GLY VAL TYR VAL SER MET GLY SEQRES 23 B 345 VAL TYR SER ASP GLU ASN PRO TYR GLY VAL PRO SER GLY SEQRES 24 B 345 LEU ILE PHE SER PHE PRO CYS THR CYS HIS ALA GLY GLU SEQRES 25 B 345 TRP THR VAL VAL SER GLY LYS LEU ASN GLY ASP LEU GLY SEQRES 26 B 345 LYS GLN ARG LEU ALA SER THR ILE ALA GLU LEU GLN GLU SEQRES 27 B 345 GLU ARG ALA GLN ALA GLY LEU HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 B 400 5 HET SO4 B 401 5 HET SO4 B 402 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *635(H2 O) HELIX 1 1 GLY A 13 GLY A 26 1 14 HELIX 2 2 ILE A 42 PRO A 44 5 3 HELIX 3 3 ALA A 45 CYS A 59 1 15 HELIX 4 4 ASP A 72 PHE A 77 1 6 HELIX 5 5 GLU A 96 ALA A 119 1 24 HELIX 6 6 PRO A 131 ALA A 143 1 13 HELIX 7 7 ASN A 148 ARG A 150 5 3 HELIX 8 8 THR A 156 GLY A 172 1 17 HELIX 9 9 PRO A 174 SER A 176 5 3 HELIX 10 10 ARG A 206 ILE A 209 5 4 HELIX 11 11 PHE A 218 GLY A 234 1 17 HELIX 12 12 ALA A 238 GLY A 255 1 18 HELIX 13 13 LYS A 305 ARG A 307 5 3 HELIX 14 14 LEU A 308 ALA A 322 1 15 HELIX 15 15 GLY B 13 ARG B 25 1 13 HELIX 16 16 ILE B 42 PRO B 44 5 3 HELIX 17 17 ALA B 45 CYS B 59 1 15 HELIX 18 18 ASP B 72 ASP B 78 1 7 HELIX 19 19 GLU B 96 ALA B 119 1 24 HELIX 20 20 PRO B 131 ALA B 143 1 13 HELIX 21 21 ASN B 148 ARG B 150 5 3 HELIX 22 22 THR B 156 GLY B 172 1 17 HELIX 23 23 PRO B 174 SER B 176 5 3 HELIX 24 24 PHE B 218 GLY B 234 1 17 HELIX 25 25 ALA B 238 GLY B 255 1 18 HELIX 26 26 LYS B 305 ARG B 307 5 3 HELIX 27 27 LEU B 308 ALA B 322 1 15 SHEET 1 A 6 LEU A 64 THR A 70 0 SHEET 2 A 6 VAL A 35 LEU A 40 1 N LEU A 39 O VAL A 68 SHEET 3 A 6 VAL A 4 THR A 9 1 N VAL A 6 O GLU A 36 SHEET 4 A 6 ILE A 82 MET A 85 1 O ILE A 82 N ALA A 7 SHEET 5 A 6 ARG A 124 VAL A 127 1 O VAL A 126 N MET A 85 SHEET 6 A 6 VAL A 152 ALA A 154 1 O THR A 153 N VAL A 127 SHEET 1 B 3 VAL A 178 ARG A 179 0 SHEET 2 B 3 VAL A 199 ILE A 200 -1 O VAL A 199 N ARG A 179 SHEET 3 B 3 THR A 203 PRO A 204 -1 O THR A 203 N ILE A 200 SHEET 1 C 2 ILE A 182 TRP A 184 0 SHEET 2 C 2 VAL A 192 ASP A 194 -1 O ASP A 194 N ILE A 182 SHEET 1 D 3 VAL A 262 TYR A 267 0 SHEET 2 D 3 ILE A 280 HIS A 288 -1 O PHE A 281 N VAL A 266 SHEET 3 D 3 GLU A 291 VAL A 294 -1 O THR A 293 N THR A 286 SHEET 1 E 6 LEU B 64 THR B 70 0 SHEET 2 E 6 VAL B 35 LEU B 40 1 N LEU B 39 O VAL B 68 SHEET 3 E 6 VAL B 4 THR B 9 1 N VAL B 6 O GLU B 36 SHEET 4 E 6 ILE B 82 MET B 85 1 O ILE B 82 N ALA B 7 SHEET 5 E 6 ARG B 124 VAL B 127 1 O VAL B 126 N MET B 85 SHEET 6 E 6 VAL B 152 ALA B 154 1 O THR B 153 N VAL B 127 SHEET 1 F 2 VAL B 178 ARG B 179 0 SHEET 2 F 2 VAL B 199 ILE B 200 -1 O VAL B 199 N ARG B 179 SHEET 1 G 2 ILE B 182 TRP B 184 0 SHEET 2 G 2 VAL B 192 ASP B 194 -1 O ASP B 194 N ILE B 182 SHEET 1 H 3 VAL B 262 TYR B 267 0 SHEET 2 H 3 ILE B 280 HIS B 288 -1 O PHE B 281 N VAL B 266 SHEET 3 H 3 GLU B 291 VAL B 294 -1 O THR B 293 N THR B 286 CISPEP 1 ASN A 130 PRO A 131 0 -2.65 CISPEP 2 ASN B 130 PRO B 131 0 -3.32 SITE 1 AC1 7 ARG A 25 ALA A 27 HOH A 554 HOH A 646 SITE 2 AC1 7 HOH A 801 ARG B 25 HOH B 599 SITE 1 AC2 8 ARG A 162 GLY A 226 SER A 237 HOH A 581 SITE 2 AC2 8 HOH A 594 HOH A 675 HOH A 780 HOH A 826 SITE 1 AC3 8 ARG B 162 GLY B 226 SER B 237 HOH B 540 SITE 2 AC3 8 HOH B 633 HOH B 705 HOH B 733 HOH B 792 SITE 1 AC4 3 ARG B 38 LYS B 66 HOH B 724 SITE 1 AC5 5 GLY B 13 GLN B 14 HOH B 649 HOH B 749 SITE 2 AC5 5 HOH B 750 CRYST1 64.580 65.660 77.650 90.00 110.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015485 0.000000 0.005669 0.00000 SCALE2 0.000000 0.015230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013714 0.00000