HEADER OXIDOREDUCTASE 22-SEP-12 4H8A TITLE CRYSTAL STRUCTURE OF UREIDOGLYCOLATE DEHYDROGENASE IN BINARY COMPLEX TITLE 2 WITH NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREIDOGLYCOLATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: (S)-UREIDOGLYCOLATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.154; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ALLD, GLXB8, YLBC, B0517, JW0505; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RHEE,I.SHIN,M.KIM REVDAT 4 20-SEP-23 4H8A 1 REMARK SEQADV REVDAT 3 11-APR-18 4H8A 1 REMARK REVDAT 2 04-APR-18 4H8A 1 REMARK REVDAT 1 16-JAN-13 4H8A 0 JRNL AUTH M.I.KIM,I.SHIN,S.CHO,J.LEE,S.RHEE JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO (S)-UREIDOGLYCOLATE JRNL TITL 2 DEHYDROGENASE, A METABOLIC BRANCH POINT ENZYME IN NITROGEN JRNL TITL 3 UTILIZATION. JRNL REF PLOS ONE V. 7 52066 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23284870 JRNL DOI 10.1371/JOURNAL.PONE.0052066 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 99311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0889 - 3.9522 0.95 7048 145 0.2123 0.2335 REMARK 3 2 3.9522 - 3.1372 0.98 7012 144 0.2016 0.2289 REMARK 3 3 3.1372 - 2.7407 1.00 7041 145 0.2366 0.2258 REMARK 3 4 2.7407 - 2.4901 1.00 7026 144 0.2394 0.2654 REMARK 3 5 2.4901 - 2.3117 1.00 6978 144 0.2354 0.2531 REMARK 3 6 2.3117 - 2.1754 1.00 6949 143 0.2394 0.2563 REMARK 3 7 2.1754 - 2.0664 1.00 6974 143 0.2389 0.2575 REMARK 3 8 2.0664 - 1.9765 1.00 6944 142 0.2426 0.2612 REMARK 3 9 1.9765 - 1.9004 1.00 6919 143 0.2397 0.2547 REMARK 3 10 1.9004 - 1.8348 1.00 6933 142 0.2514 0.2386 REMARK 3 11 1.8348 - 1.7774 1.00 6926 142 0.2649 0.2867 REMARK 3 12 1.7774 - 1.7266 1.00 6907 142 0.2725 0.2968 REMARK 3 13 1.7266 - 1.6812 1.00 6883 142 0.2875 0.2865 REMARK 3 14 1.6812 - 1.6400 0.98 6771 139 0.3236 0.3272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 45.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15460 REMARK 3 B22 (A**2) : -2.15460 REMARK 3 B33 (A**2) : 4.30910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5154 REMARK 3 ANGLE : 1.139 7002 REMARK 3 CHIRALITY : 0.075 765 REMARK 3 PLANARITY : 0.004 917 REMARK 3 DIHEDRAL : 15.727 1880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:130) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5166 -28.5492 -14.9638 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.2468 REMARK 3 T33: 0.2102 T12: 0.1325 REMARK 3 T13: -0.0770 T23: -0.0910 REMARK 3 L TENSOR REMARK 3 L11: 0.0645 L22: 0.2764 REMARK 3 L33: 0.4056 L12: -0.0183 REMARK 3 L13: -0.0378 L23: -0.0688 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: 0.1089 S13: -0.1321 REMARK 3 S21: 0.0538 S22: 0.0999 S23: -0.0154 REMARK 3 S31: 0.2976 S32: 0.2357 S33: 0.3201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 131:292) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3801 -11.8890 -13.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1264 REMARK 3 T33: 0.0943 T12: -0.0151 REMARK 3 T13: -0.0147 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.1049 L22: 0.0760 REMARK 3 L33: 0.1157 L12: 0.0046 REMARK 3 L13: 0.0612 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.0741 S13: -0.0608 REMARK 3 S21: -0.0032 S22: 0.1055 S23: -0.0727 REMARK 3 S31: -0.0486 S32: 0.1449 S33: -0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 293:337) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6507 -15.6771 -28.3006 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.4651 REMARK 3 T33: 0.2164 T12: -0.0398 REMARK 3 T13: 0.0261 T23: -0.0475 REMARK 3 L TENSOR REMARK 3 L11: 0.0434 L22: 0.0821 REMARK 3 L33: 0.1537 L12: 0.0463 REMARK 3 L13: 0.0789 L23: 0.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0261 S13: 0.0685 REMARK 3 S21: -0.0498 S22: 0.1195 S23: -0.0463 REMARK 3 S31: 0.0028 S32: 0.3471 S33: 0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 3:164) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4465 -5.0895 -14.8692 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.1923 REMARK 3 T33: 0.1863 T12: 0.0802 REMARK 3 T13: -0.0779 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 0.3107 L22: 0.1818 REMARK 3 L33: 0.4845 L12: 0.1681 REMARK 3 L13: 0.1097 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.1405 S12: -0.1702 S13: 0.1286 REMARK 3 S21: -0.0574 S22: -0.0530 S23: 0.0527 REMARK 3 S31: -0.1632 S32: -0.2320 S33: -0.2421 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 165:209) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7887 7.5676 -17.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.3104 T22: 0.2232 REMARK 3 T33: 0.2424 T12: -0.0810 REMARK 3 T13: -0.0845 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.1414 L22: 0.0610 REMARK 3 L33: 0.0070 L12: -0.0923 REMARK 3 L13: 0.0309 L23: -0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: -0.1049 S13: 0.1052 REMARK 3 S21: -0.0345 S22: 0.0446 S23: 0.0157 REMARK 3 S31: -0.1313 S32: 0.0057 S33: -0.0024 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 210:315) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0526 -4.7300 -12.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.1418 REMARK 3 T33: 0.1404 T12: 0.0054 REMARK 3 T13: -0.0382 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.1173 L22: 0.0527 REMARK 3 L33: 0.0534 L12: 0.0264 REMARK 3 L13: 0.0605 L23: 0.0481 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: -0.0802 S13: 0.0871 REMARK 3 S21: -0.0455 S22: 0.0044 S23: 0.0310 REMARK 3 S31: -0.0667 S32: -0.0331 S33: -0.0280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : KOZHU DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.96800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1XRH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.0, 4.0 M SODIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 81.25450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 81.25450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.49400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 81.25450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 81.25450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.49400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 81.25450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.25450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.49400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 81.25450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.25450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.49400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 553 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 545 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 574 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 582 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 620 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 316 REMARK 465 ALA B 317 REMARK 465 VAL B 318 REMARK 465 GLU B 319 REMARK 465 GLY B 320 REMARK 465 ILE B 321 REMARK 465 GLU B 322 REMARK 465 ILE B 323 REMARK 465 VAL B 324 REMARK 465 ASP B 325 REMARK 465 ASP B 326 REMARK 465 ILE B 327 REMARK 465 TYR B 328 REMARK 465 GLN B 329 REMARK 465 TYR B 330 REMARK 465 LEU B 331 REMARK 465 ILE B 332 REMARK 465 SER B 333 REMARK 465 ASP B 334 REMARK 465 ALA B 335 REMARK 465 LEU B 336 REMARK 465 TYR B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 37 O HOH B 768 1.80 REMARK 500 NH2 ARG B 48 O HOH B 853 1.81 REMARK 500 O HOH B 633 O HOH B 832 1.82 REMARK 500 O HOH A 574 O HOH A 741 1.82 REMARK 500 O HOH A 702 O HOH A 771 1.82 REMARK 500 CA HIS B 42 O HOH B 768 1.82 REMARK 500 O HOH B 711 O HOH B 794 1.82 REMARK 500 O HOH B 649 O HOH B 847 1.83 REMARK 500 O HOH B 822 O HOH B 823 1.83 REMARK 500 O ARG B 5 O HOH B 771 1.84 REMARK 500 NH1 ARG B 129 O HOH B 834 1.85 REMARK 500 SD MET A 251 O HOH A 799 1.85 REMARK 500 O HOH A 509 O HOH A 686 1.86 REMARK 500 O HOH A 624 O HOH A 653 1.86 REMARK 500 NE ARG B 48 O HOH B 853 1.86 REMARK 500 OE1 GLU A 95 O HOH A 781 1.87 REMARK 500 O HOH A 770 O HOH A 802 1.88 REMARK 500 O HOH A 610 O HOH A 765 1.88 REMARK 500 O HOH B 775 O HOH B 836 1.88 REMARK 500 O HOH B 680 O HOH B 846 1.88 REMARK 500 O HOH B 664 O HOH B 708 1.90 REMARK 500 O HOH B 819 O HOH B 837 1.90 REMARK 500 CZ ARG B 48 O HOH B 853 1.90 REMARK 500 OG1 THR A 7 O HOH A 840 1.92 REMARK 500 OD1 ASP A 168 O HOH A 800 1.92 REMARK 500 O HOH B 690 O HOH B 693 1.93 REMARK 500 O HOH B 646 O HOH B 782 1.93 REMARK 500 SD MET B 287 O HOH B 780 1.95 REMARK 500 O HOH A 762 O HOH A 805 1.96 REMARK 500 O HOH A 605 O HOH A 676 1.98 REMARK 500 O HOH A 533 O HOH A 710 1.98 REMARK 500 O HOH A 763 O HOH A 822 1.98 REMARK 500 O GLU B 50 O HOH B 764 1.99 REMARK 500 O HOH B 767 O HOH B 768 1.99 REMARK 500 N TYR B 51 O HOH B 604 2.00 REMARK 500 O HOH B 675 O HOH B 865 2.00 REMARK 500 N ARG B 39 O HOH B 773 2.01 REMARK 500 O HOH B 646 O HOH B 670 2.01 REMARK 500 O HOH B 624 O HOH B 685 2.01 REMARK 500 O HOH B 796 O HOH B 854 2.02 REMARK 500 CG2 THR A 7 O HOH A 840 2.02 REMARK 500 C ARG B 5 O HOH B 771 2.03 REMARK 500 O HOH B 716 O HOH B 723 2.04 REMARK 500 NZ LYS B 15 O HOH B 698 2.04 REMARK 500 CA ARG B 5 O HOH B 771 2.04 REMARK 500 O HOH B 665 O HOH B 715 2.04 REMARK 500 CB ARG B 5 O HOH B 771 2.05 REMARK 500 O VAL B 47 O HOH B 559 2.05 REMARK 500 OE1 GLN B 180 O HOH B 798 2.05 REMARK 500 O HOH A 686 O HOH A 698 2.06 REMARK 500 REMARK 500 THIS ENTRY HAS 83 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 818 O HOH B 869 8555 1.96 REMARK 500 O HOH B 527 O HOH B 554 8554 2.06 REMARK 500 O HOH B 766 O HOH B 774 7555 2.11 REMARK 500 O HOH A 765 O HOH A 765 8554 2.18 REMARK 500 OG1 THR B 7 OG1 THR B 7 7555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 113 75.87 73.69 REMARK 500 MET A 143 -2.73 -154.92 REMARK 500 TYR A 153 -71.19 -138.12 REMARK 500 ASN A 157 84.86 21.35 REMARK 500 ASN A 192 84.56 51.00 REMARK 500 VAL A 318 -65.60 -90.96 REMARK 500 ILE B 41 56.63 -90.71 REMARK 500 HIS B 44 21.34 -145.14 REMARK 500 ARG B 113 78.68 75.35 REMARK 500 MET B 143 -8.41 -156.53 REMARK 500 TYR B 153 -75.23 -142.14 REMARK 500 ASN B 157 83.89 24.97 REMARK 500 ASN B 192 17.71 54.45 REMARK 500 ASP B 254 99.04 -164.38 REMARK 500 PHE B 273 -43.20 -132.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 401 DBREF 4H8A A 1 337 UNP P77555 ALLD_ECOLI 1 337 DBREF 4H8A B 1 337 UNP P77555 ALLD_ECOLI 1 337 SEQADV 4H8A GLY A -1 UNP P77555 EXPRESSION TAG SEQADV 4H8A HIS A 0 UNP P77555 EXPRESSION TAG SEQADV 4H8A GLY B -1 UNP P77555 EXPRESSION TAG SEQADV 4H8A HIS B 0 UNP P77555 EXPRESSION TAG SEQRES 1 A 339 GLY HIS MET LYS ILE SER ARG GLU THR LEU HIS GLN LEU SEQRES 2 A 339 ILE GLU ASN LYS LEU CYS GLN ALA GLY LEU LYS ARG GLU SEQRES 3 A 339 HIS ALA ALA THR VAL ALA GLU VAL LEU VAL TYR ALA ASP SEQRES 4 A 339 ALA ARG GLY ILE HIS SER HIS GLY ALA VAL ARG VAL GLU SEQRES 5 A 339 TYR TYR ALA GLU ARG ILE SER LYS GLY GLY THR ASN ARG SEQRES 6 A 339 GLU PRO GLU PHE ARG LEU GLU GLU THR GLY PRO CYS SER SEQRES 7 A 339 ALA ILE LEU HIS ALA ASP ASN ALA ALA GLY GLN VAL ALA SEQRES 8 A 339 ALA LYS MET GLY MET GLU HIS ALA ILE LYS THR ALA GLN SEQRES 9 A 339 GLN ASN GLY VAL ALA VAL VAL GLY ILE SER ARG MET GLY SEQRES 10 A 339 HIS SER GLY ALA ILE SER TYR PHE VAL GLN GLN ALA ALA SEQRES 11 A 339 ARG ALA GLY PHE ILE GLY ILE SER MET CYS GLN SER ASP SEQRES 12 A 339 PRO MET VAL VAL PRO PHE GLY GLY ALA GLU ILE TYR TYR SEQRES 13 A 339 GLY THR ASN PRO LEU ALA PHE ALA ALA PRO GLY GLU GLY SEQRES 14 A 339 ASP GLU ILE LEU THR PHE ASP MET ALA THR THR VAL GLN SEQRES 15 A 339 ALA TRP GLY LYS VAL LEU ASP ALA ARG SER ARG ASN MET SEQRES 16 A 339 SER ILE PRO ASP THR TRP ALA VAL ASP LYS ASN GLY VAL SEQRES 17 A 339 PRO THR THR ASP PRO PHE ALA VAL HIS ALA LEU LEU PRO SEQRES 18 A 339 ALA ALA GLY PRO LYS GLY TYR GLY LEU MET MET MET ILE SEQRES 19 A 339 ASP VAL LEU SER GLY VAL LEU LEU GLY LEU PRO PHE GLY SEQRES 20 A 339 ARG GLN VAL SER SER MET TYR ASP ASP LEU HIS ALA GLY SEQRES 21 A 339 ARG ASN LEU GLY GLN LEU HIS ILE VAL ILE ASN PRO ASN SEQRES 22 A 339 PHE PHE SER SER SER GLU LEU PHE ARG GLN HIS LEU SER SEQRES 23 A 339 GLN THR MET ARG GLU LEU ASN ALA ILE THR PRO ALA PRO SEQRES 24 A 339 GLY PHE ASN GLN VAL TYR TYR PRO GLY GLN ASP GLN ASP SEQRES 25 A 339 ILE LYS GLN ARG LYS ALA ALA VAL GLU GLY ILE GLU ILE SEQRES 26 A 339 VAL ASP ASP ILE TYR GLN TYR LEU ILE SER ASP ALA LEU SEQRES 27 A 339 TYR SEQRES 1 B 339 GLY HIS MET LYS ILE SER ARG GLU THR LEU HIS GLN LEU SEQRES 2 B 339 ILE GLU ASN LYS LEU CYS GLN ALA GLY LEU LYS ARG GLU SEQRES 3 B 339 HIS ALA ALA THR VAL ALA GLU VAL LEU VAL TYR ALA ASP SEQRES 4 B 339 ALA ARG GLY ILE HIS SER HIS GLY ALA VAL ARG VAL GLU SEQRES 5 B 339 TYR TYR ALA GLU ARG ILE SER LYS GLY GLY THR ASN ARG SEQRES 6 B 339 GLU PRO GLU PHE ARG LEU GLU GLU THR GLY PRO CYS SER SEQRES 7 B 339 ALA ILE LEU HIS ALA ASP ASN ALA ALA GLY GLN VAL ALA SEQRES 8 B 339 ALA LYS MET GLY MET GLU HIS ALA ILE LYS THR ALA GLN SEQRES 9 B 339 GLN ASN GLY VAL ALA VAL VAL GLY ILE SER ARG MET GLY SEQRES 10 B 339 HIS SER GLY ALA ILE SER TYR PHE VAL GLN GLN ALA ALA SEQRES 11 B 339 ARG ALA GLY PHE ILE GLY ILE SER MET CYS GLN SER ASP SEQRES 12 B 339 PRO MET VAL VAL PRO PHE GLY GLY ALA GLU ILE TYR TYR SEQRES 13 B 339 GLY THR ASN PRO LEU ALA PHE ALA ALA PRO GLY GLU GLY SEQRES 14 B 339 ASP GLU ILE LEU THR PHE ASP MET ALA THR THR VAL GLN SEQRES 15 B 339 ALA TRP GLY LYS VAL LEU ASP ALA ARG SER ARG ASN MET SEQRES 16 B 339 SER ILE PRO ASP THR TRP ALA VAL ASP LYS ASN GLY VAL SEQRES 17 B 339 PRO THR THR ASP PRO PHE ALA VAL HIS ALA LEU LEU PRO SEQRES 18 B 339 ALA ALA GLY PRO LYS GLY TYR GLY LEU MET MET MET ILE SEQRES 19 B 339 ASP VAL LEU SER GLY VAL LEU LEU GLY LEU PRO PHE GLY SEQRES 20 B 339 ARG GLN VAL SER SER MET TYR ASP ASP LEU HIS ALA GLY SEQRES 21 B 339 ARG ASN LEU GLY GLN LEU HIS ILE VAL ILE ASN PRO ASN SEQRES 22 B 339 PHE PHE SER SER SER GLU LEU PHE ARG GLN HIS LEU SER SEQRES 23 B 339 GLN THR MET ARG GLU LEU ASN ALA ILE THR PRO ALA PRO SEQRES 24 B 339 GLY PHE ASN GLN VAL TYR TYR PRO GLY GLN ASP GLN ASP SEQRES 25 B 339 ILE LYS GLN ARG LYS ALA ALA VAL GLU GLY ILE GLU ILE SEQRES 26 B 339 VAL ASP ASP ILE TYR GLN TYR LEU ILE SER ASP ALA LEU SEQRES 27 B 339 TYR HET NAI A 401 44 HET NAI B 401 44 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 HOH *711(H2 O) HELIX 1 1 SER A 4 GLY A 20 1 17 HELIX 2 2 LYS A 22 GLY A 40 1 19 HELIX 3 3 ILE A 41 VAL A 47 5 7 HELIX 4 4 ARG A 48 LYS A 58 1 11 HELIX 5 5 ALA A 85 GLY A 105 1 21 HELIX 6 6 ILE A 120 ALA A 130 1 11 HELIX 7 7 ALA A 181 ASN A 192 1 12 HELIX 8 8 GLY A 222 GLY A 237 1 16 HELIX 9 9 VAL A 238 GLY A 241 5 4 HELIX 10 10 PHE A 244 VAL A 248 5 5 HELIX 11 11 PRO A 270 PHE A 273 5 4 HELIX 12 12 SER A 275 ALA A 292 1 18 HELIX 13 13 GLY A 306 GLY A 320 1 15 HELIX 14 14 VAL A 324 ILE A 332 1 9 HELIX 15 15 SER B 4 GLY B 20 1 17 HELIX 16 16 LYS B 22 ARG B 39 1 18 HELIX 17 17 GLY B 40 VAL B 47 5 8 HELIX 18 18 ARG B 48 LYS B 58 1 11 HELIX 19 19 ALA B 85 GLY B 105 1 21 HELIX 20 20 ILE B 120 ALA B 130 1 11 HELIX 21 21 ALA B 181 VAL B 185 5 5 HELIX 22 22 GLY B 222 GLY B 237 1 16 HELIX 23 23 VAL B 238 GLY B 241 5 4 HELIX 24 24 PHE B 244 VAL B 248 5 5 HELIX 25 25 PRO B 270 PHE B 273 5 4 HELIX 26 26 SER B 275 ALA B 292 1 18 HELIX 27 27 GLY B 306 LYS B 315 1 10 SHEET 1 A 2 LYS A 2 ILE A 3 0 SHEET 2 A 2 ILE A 321 GLU A 322 -1 O ILE A 321 N ILE A 3 SHEET 1 B 7 ARG A 68 GLY A 73 0 SHEET 2 B 7 SER A 76 HIS A 80 -1 O HIS A 80 N ARG A 68 SHEET 3 B 7 VAL A 106 MET A 114 1 O GLY A 110 N LEU A 79 SHEET 4 B 7 LEU A 261 ILE A 268 -1 O GLN A 263 N ILE A 111 SHEET 5 B 7 ILE A 133 CYS A 138 -1 N ILE A 133 O ILE A 268 SHEET 6 B 7 LEU A 159 PRO A 164 -1 O ALA A 160 N SER A 136 SHEET 7 B 7 ILE A 170 MET A 175 -1 O PHE A 173 N PHE A 161 SHEET 1 C 2 ALA A 200 VAL A 201 0 SHEET 2 C 2 ALA A 216 LEU A 217 -1 O ALA A 216 N VAL A 201 SHEET 1 D 7 ARG B 68 GLY B 73 0 SHEET 2 D 7 SER B 76 HIS B 80 -1 O HIS B 80 N ARG B 68 SHEET 3 D 7 VAL B 106 MET B 114 1 O GLY B 110 N LEU B 79 SHEET 4 D 7 LEU B 261 ILE B 268 -1 O GLN B 263 N ILE B 111 SHEET 5 D 7 ILE B 133 CYS B 138 -1 N MET B 137 O LEU B 264 SHEET 6 D 7 LEU B 159 PRO B 164 -1 O ALA B 162 N GLY B 134 SHEET 7 D 7 ILE B 170 MET B 175 -1 O PHE B 173 N PHE B 161 SHEET 1 E 2 ALA B 200 VAL B 201 0 SHEET 2 E 2 ALA B 216 LEU B 217 -1 O ALA B 216 N VAL B 201 SITE 1 AC1 35 ILE A 41 HIS A 44 HIS A 116 GLY A 118 SITE 2 AC1 35 ILE A 120 SER A 140 THR A 156 PRO A 158 SITE 3 AC1 35 PHE A 173 ASP A 174 ALA A 176 ALA A 181 SITE 4 AC1 35 TYR A 303 TYR A 304 GLY A 306 ASP A 308 SITE 5 AC1 35 GLN A 309 HOH A 522 HOH A 523 HOH A 525 SITE 6 AC1 35 HOH A 526 HOH A 533 HOH A 547 HOH A 550 SITE 7 AC1 35 HOH A 577 HOH A 589 HOH A 614 HOH A 616 SITE 8 AC1 35 HOH A 633 HOH A 690 HOH A 710 HOH A 754 SITE 9 AC1 35 PHE B 147 PRO B 223 LYS B 224 SITE 1 AC2 33 PHE A 147 PRO A 223 LYS A 224 HOH A 544 SITE 2 AC2 33 HOH A 660 HIS B 44 HIS B 116 GLY B 118 SITE 3 AC2 33 ILE B 120 SER B 140 THR B 156 PRO B 158 SITE 4 AC2 33 PHE B 173 ASP B 174 ALA B 176 ALA B 181 SITE 5 AC2 33 TYR B 303 TYR B 304 PRO B 305 GLY B 306 SITE 6 AC2 33 ASP B 308 GLN B 309 HOH B 511 HOH B 528 SITE 7 AC2 33 HOH B 560 HOH B 653 HOH B 667 HOH B 670 SITE 8 AC2 33 HOH B 722 HOH B 749 HOH B 752 HOH B 798 SITE 9 AC2 33 HOH B 848 CRYST1 162.509 162.509 60.988 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016397 0.00000