HEADER HYDROLASE/ANTIBIOTIC 23-SEP-12 4H8R TITLE IMIPENEM COMPLEX OF GES-5 CARBAPENEMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTENDED-SPECTRUM BETA-LACTAMASE GES-5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAGES-5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, CARBAPENEMASE, CARBAPENEM ANTIBIOTICS, HYDROLASE- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SMITH,S.B.VAKULENKO REVDAT 2 03-APR-24 4H8R 1 COMPND REMARK HETNAM LINK REVDAT 1 24-JUL-13 4H8R 0 JRNL AUTH C.A.SMITH,H.FRASE,M.TOTH,M.KUMARASIRI,K.WIAFE,J.MUNOZ, JRNL AUTH 2 S.MOBASHERY,S.B.VAKULENKO JRNL TITL STRUCTURAL BASIS FOR PROGRESSION TOWARD THE CARBAPENEMASE JRNL TITL 2 ACTIVITY IN THE GES FAMILY OF BETA-LACTAMASES. JRNL REF J.AM.CHEM.SOC. V. 134 19512 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 23148776 JRNL DOI 10.1021/JA308197J REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 126746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 6393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8342 - 3.8827 0.96 4171 204 0.1686 0.1982 REMARK 3 2 3.8827 - 3.0823 0.97 4129 228 0.1482 0.1578 REMARK 3 3 3.0823 - 2.6929 0.97 4108 221 0.1651 0.1858 REMARK 3 4 2.6929 - 2.4467 0.94 3963 230 0.1563 0.1653 REMARK 3 5 2.4467 - 2.2714 0.97 4075 194 0.1447 0.1610 REMARK 3 6 2.2714 - 2.1375 0.98 4151 193 0.1301 0.1466 REMARK 3 7 2.1375 - 2.0304 0.98 4123 236 0.1305 0.1502 REMARK 3 8 2.0304 - 1.9421 0.98 4074 230 0.1350 0.1547 REMARK 3 9 1.9421 - 1.8673 0.98 4139 217 0.1352 0.1585 REMARK 3 10 1.8673 - 1.8029 0.96 4083 222 0.1282 0.1587 REMARK 3 11 1.8029 - 1.7465 0.95 4027 208 0.1278 0.1363 REMARK 3 12 1.7465 - 1.6966 0.97 4078 220 0.1280 0.1537 REMARK 3 13 1.6966 - 1.6519 0.98 4084 244 0.1185 0.1613 REMARK 3 14 1.6519 - 1.6116 0.97 4108 220 0.1153 0.1437 REMARK 3 15 1.6116 - 1.5750 0.97 4068 204 0.1205 0.1568 REMARK 3 16 1.5750 - 1.5415 0.97 4107 222 0.1182 0.1556 REMARK 3 17 1.5415 - 1.5106 0.96 4041 224 0.1246 0.1592 REMARK 3 18 1.5106 - 1.4821 0.97 4055 202 0.1239 0.1595 REMARK 3 19 1.4821 - 1.4556 0.94 3972 196 0.1285 0.1568 REMARK 3 20 1.4556 - 1.4310 0.95 3967 209 0.1286 0.1552 REMARK 3 21 1.4310 - 1.4079 0.93 3922 217 0.1360 0.1742 REMARK 3 22 1.4079 - 1.3862 0.96 3977 218 0.1536 0.1956 REMARK 3 23 1.3862 - 1.3658 0.93 3921 222 0.1543 0.1867 REMARK 3 24 1.3658 - 1.3466 0.95 3967 212 0.1583 0.1989 REMARK 3 25 1.3466 - 1.3284 0.93 3916 189 0.1730 0.2084 REMARK 3 26 1.3284 - 1.3111 0.93 3895 208 0.1844 0.2085 REMARK 3 27 1.3111 - 1.2948 0.93 3918 230 0.1979 0.2373 REMARK 3 28 1.2948 - 1.2792 0.92 3888 195 0.2190 0.2915 REMARK 3 29 1.2792 - 1.2643 0.92 3822 189 0.2527 0.2617 REMARK 3 30 1.2643 - 1.2501 0.85 3604 189 0.2639 0.3015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 52.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97170 REMARK 3 B22 (A**2) : -1.53090 REMARK 3 B33 (A**2) : 0.55930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.07800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4439 REMARK 3 ANGLE : 1.222 6039 REMARK 3 CHIRALITY : 0.078 697 REMARK 3 PLANARITY : 0.006 795 REMARK 3 DIHEDRAL : 15.161 1717 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126748 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: APO GES-5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNBUFFERED 0.2% SODIUM IODIDE AND 18 REMARK 280 -20% PEG 3350, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 HIS A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 ALA A 18 REMARK 465 ASP A 286 REMARK 465 LYS A 287 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PHE B 3 REMARK 465 ILE B 4 REMARK 465 HIS B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 ILE B 12 REMARK 465 ALA B 13 REMARK 465 HIS B 14 REMARK 465 SER B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 ALA B 18 REMARK 465 THR B 285 REMARK 465 ASP B 286 REMARK 465 LYS B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 90 CB SER A 90 OG -0.086 REMARK 500 ASN A 209 CB ASN A 209 CG -0.269 REMARK 500 CYS B 63 CB CYS B 63 SG -0.288 REMARK 500 CYS B 233 CB CYS B 233 SG 0.298 REMARK 500 CYS B 233 CB CYS B 233 SG -0.152 REMARK 500 CYS B 233 CA CYS B 233 C 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 233 CB - CA - C ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 -139.24 45.63 REMARK 500 CYS A 63 -136.21 39.77 REMARK 500 THR A 215 -130.98 -105.28 REMARK 500 GLN A 247 -107.19 60.64 REMARK 500 CYS B 63 -133.96 38.93 REMARK 500 CYS B 63 -138.48 47.34 REMARK 500 THR B 215 -128.23 -106.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS B 233 -10.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 IM2 A 501 REMARK 615 IM2 B 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IM2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IM2 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GNU RELATED DB: PDB REMARK 900 APOGES-5 REMARK 900 RELATED ID: 4GOG RELATED DB: PDB REMARK 900 IMIPENEM COMPLEX OF GES-1 DBREF 4H8R A 1 287 UNP Q09HD0 Q09HD0_KLEPN 1 287 DBREF 4H8R B 1 287 UNP Q09HD0 Q09HD0_KLEPN 1 287 SEQRES 1 A 287 MET ARG PHE ILE HIS ALA LEU LEU LEU ALA GLY ILE ALA SEQRES 2 A 287 HIS SER ALA TYR ALA SER GLU LYS LEU THR PHE LYS THR SEQRES 3 A 287 ASP LEU GLU LYS LEU GLU ARG GLU LYS ALA ALA GLN ILE SEQRES 4 A 287 GLY VAL ALA ILE VAL ASP PRO GLN GLY GLU ILE VAL ALA SEQRES 5 A 287 GLY HIS ARG MET ALA GLN ARG PHE ALA MET CYS SER THR SEQRES 6 A 287 PHE LYS PHE PRO LEU ALA ALA LEU VAL PHE GLU ARG ILE SEQRES 7 A 287 ASP SER GLY THR GLU ARG GLY ASP ARG LYS LEU SER TYR SEQRES 8 A 287 GLY PRO ASP MET ILE VAL GLU TRP SER PRO ALA THR GLU SEQRES 9 A 287 ARG PHE LEU ALA SER GLY HIS MET THR VAL LEU GLU ALA SEQRES 10 A 287 ALA GLN ALA ALA VAL GLN LEU SER ASP ASN GLY ALA THR SEQRES 11 A 287 ASN LEU LEU LEU ARG GLU ILE GLY GLY PRO ALA ALA MET SEQRES 12 A 287 THR GLN TYR PHE ARG LYS ILE GLY ASP SER VAL SER ARG SEQRES 13 A 287 LEU ASP ARG LYS GLU PRO GLU MET SER ASP ASN THR PRO SEQRES 14 A 287 GLY ASP LEU ARG ASP THR THR THR PRO ILE ALA MET ALA SEQRES 15 A 287 ARG THR VAL ALA LYS VAL LEU TYR GLY GLY ALA LEU THR SEQRES 16 A 287 SER THR SER THR HIS THR ILE GLU ARG TRP LEU ILE GLY SEQRES 17 A 287 ASN GLN THR GLY ASP ALA THR LEU ARG ALA GLY PHE PRO SEQRES 18 A 287 LYS ASP TRP VAL VAL GLY GLU LYS THR GLY THR CYS ALA SEQRES 19 A 287 ASN GLY GLY ARG ASN ASP ILE GLY PHE PHE LYS ALA GLN SEQRES 20 A 287 GLU ARG ASP TYR ALA VAL ALA VAL TYR THR THR ALA PRO SEQRES 21 A 287 LYS LEU SER ALA VAL GLU ARG ASP GLU LEU VAL ALA SER SEQRES 22 A 287 VAL GLY GLN VAL ILE THR GLN LEU ILE LEU SER THR ASP SEQRES 23 A 287 LYS SEQRES 1 B 287 MET ARG PHE ILE HIS ALA LEU LEU LEU ALA GLY ILE ALA SEQRES 2 B 287 HIS SER ALA TYR ALA SER GLU LYS LEU THR PHE LYS THR SEQRES 3 B 287 ASP LEU GLU LYS LEU GLU ARG GLU LYS ALA ALA GLN ILE SEQRES 4 B 287 GLY VAL ALA ILE VAL ASP PRO GLN GLY GLU ILE VAL ALA SEQRES 5 B 287 GLY HIS ARG MET ALA GLN ARG PHE ALA MET CYS SER THR SEQRES 6 B 287 PHE LYS PHE PRO LEU ALA ALA LEU VAL PHE GLU ARG ILE SEQRES 7 B 287 ASP SER GLY THR GLU ARG GLY ASP ARG LYS LEU SER TYR SEQRES 8 B 287 GLY PRO ASP MET ILE VAL GLU TRP SER PRO ALA THR GLU SEQRES 9 B 287 ARG PHE LEU ALA SER GLY HIS MET THR VAL LEU GLU ALA SEQRES 10 B 287 ALA GLN ALA ALA VAL GLN LEU SER ASP ASN GLY ALA THR SEQRES 11 B 287 ASN LEU LEU LEU ARG GLU ILE GLY GLY PRO ALA ALA MET SEQRES 12 B 287 THR GLN TYR PHE ARG LYS ILE GLY ASP SER VAL SER ARG SEQRES 13 B 287 LEU ASP ARG LYS GLU PRO GLU MET SER ASP ASN THR PRO SEQRES 14 B 287 GLY ASP LEU ARG ASP THR THR THR PRO ILE ALA MET ALA SEQRES 15 B 287 ARG THR VAL ALA LYS VAL LEU TYR GLY GLY ALA LEU THR SEQRES 16 B 287 SER THR SER THR HIS THR ILE GLU ARG TRP LEU ILE GLY SEQRES 17 B 287 ASN GLN THR GLY ASP ALA THR LEU ARG ALA GLY PHE PRO SEQRES 18 B 287 LYS ASP TRP VAL VAL GLY GLU LYS THR GLY THR CYS ALA SEQRES 19 B 287 ASN GLY GLY ARG ASN ASP ILE GLY PHE PHE LYS ALA GLN SEQRES 20 B 287 GLU ARG ASP TYR ALA VAL ALA VAL TYR THR THR ALA PRO SEQRES 21 B 287 LYS LEU SER ALA VAL GLU ARG ASP GLU LEU VAL ALA SER SEQRES 22 B 287 VAL GLY GLN VAL ILE THR GLN LEU ILE LEU SER THR ASP SEQRES 23 B 287 LYS HET IM2 A 501 20 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET IOD A 506 1 HET IOD A 507 1 HET IOD A 508 1 HET NA A 509 1 HET IOD A 510 1 HET IM2 B 501 20 HET IOD B 502 1 HET IOD B 503 1 HET IOD B 504 1 HET IOD B 505 1 HET IOD B 506 1 HET IOD B 507 1 HET IOD B 508 1 HET IOD B 509 1 HET NA B 510 1 HET IOD B 511 1 HET NA B 512 1 HET NA B 513 1 HETNAM IM2 (5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)- HETNAM 2 IM2 IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H- HETNAM 3 IM2 PYRROLE-2-CARBOX YLIC ACID HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETSYN IM2 IMIPENEM, OPEN FORM; N-FORMIMIDOYL-THIENAMYCINE, OPEN HETSYN 2 IM2 FORM FORMUL 3 IM2 2(C12 H19 N3 O4 S) FORMUL 4 IOD 17(I 1-) FORMUL 11 NA 4(NA 1+) FORMUL 26 HOH *526(H2 O) HELIX 1 1 SER A 19 ALA A 36 1 18 HELIX 2 2 CYS A 63 THR A 65 5 3 HELIX 3 3 PHE A 66 GLY A 81 1 16 HELIX 4 4 GLY A 92 ILE A 96 5 5 HELIX 5 5 SER A 100 LEU A 107 1 8 HELIX 6 6 VAL A 114 SER A 125 1 12 HELIX 7 7 ASP A 126 GLY A 138 1 13 HELIX 8 8 GLY A 138 ILE A 150 1 13 HELIX 9 9 PRO A 162 ASP A 166 5 5 HELIX 10 10 THR A 177 GLY A 191 1 15 HELIX 11 11 THR A 195 GLY A 208 1 14 HELIX 12 12 THR A 215 PHE A 220 5 6 HELIX 13 13 SER A 263 THR A 285 1 23 HELIX 14 14 GLU B 20 ALA B 36 1 17 HELIX 15 15 CYS B 63 THR B 65 5 3 HELIX 16 16 PHE B 66 SER B 80 1 15 HELIX 17 17 GLY B 92 ILE B 96 5 5 HELIX 18 18 SER B 100 LEU B 107 1 8 HELIX 19 19 VAL B 114 SER B 125 1 12 HELIX 20 20 ASP B 126 GLY B 138 1 13 HELIX 21 21 GLY B 138 ILE B 150 1 13 HELIX 22 22 PRO B 162 ASP B 166 5 5 HELIX 23 23 THR B 177 GLY B 191 1 15 HELIX 24 24 THR B 195 GLY B 208 1 14 HELIX 25 25 THR B 215 PHE B 220 5 6 HELIX 26 26 SER B 263 LEU B 283 1 21 SHEET 1 A 5 ILE A 50 HIS A 54 0 SHEET 2 A 5 GLN A 38 VAL A 44 -1 N ILE A 43 O VAL A 51 SHEET 3 A 5 ARG A 249 THR A 258 -1 O TYR A 256 N GLY A 40 SHEET 4 A 5 GLY A 237 ALA A 246 -1 N GLY A 242 O VAL A 253 SHEET 5 A 5 VAL A 225 CYS A 233 -1 N LYS A 229 O ILE A 241 SHEET 1 B 2 PHE A 60 ALA A 61 0 SHEET 2 B 2 THR A 175 THR A 176 -1 O THR A 176 N PHE A 60 SHEET 1 C 2 LYS A 88 SER A 90 0 SHEET 2 C 2 HIS A 111 THR A 113 -1 O MET A 112 N LEU A 89 SHEET 1 D 5 ILE B 50 HIS B 54 0 SHEET 2 D 5 GLN B 38 VAL B 44 -1 N ILE B 43 O VAL B 51 SHEET 3 D 5 ARG B 249 THR B 258 -1 O TYR B 256 N GLY B 40 SHEET 4 D 5 GLY B 237 ALA B 246 -1 N GLY B 242 O VAL B 253 SHEET 5 D 5 VAL B 225 CYS B 233 -1 N LYS B 229 O ILE B 241 SHEET 1 E 2 PHE B 60 ALA B 61 0 SHEET 2 E 2 THR B 175 THR B 176 -1 O THR B 176 N PHE B 60 SHEET 1 F 2 LYS B 88 SER B 90 0 SHEET 2 F 2 HIS B 111 THR B 113 -1 O MET B 112 N LEU B 89 SSBOND 1 CYS A 63 CYS A 233 1555 1555 2.03 SSBOND 2 CYS B 63 CYS B 233 1555 1555 1.93 LINK OG SER A 64 C7 AIM2 A 501 1555 1555 1.50 LINK OG SER B 64 C7 AIM2 B 501 1555 1555 1.46 LINK OD2 ASP A 94 NA NA A 509 1555 1555 2.00 CISPEP 1 GLU A 161 PRO A 162 0 1.37 CISPEP 2 GLU B 161 PRO B 162 0 1.52 CISPEP 3 GLU B 161 PRO B 162 0 1.67 SITE 1 AC1 14 CYS A 63 SER A 64 SER A 125 ASN A 127 SITE 2 AC1 14 GLU A 161 SER A 165 LYS A 229 THR A 230 SITE 3 AC1 14 GLY A 231 THR A 232 ARG A 238 HOH A 601 SITE 4 AC1 14 HOH A 625 HOH A 786 SITE 1 AC2 1 ARG A 204 SITE 1 AC3 1 MET A 56 SITE 1 AC4 2 ARG A 105 GLN B 210 SITE 1 AC5 1 LYS A 222 SITE 1 AC6 1 NA A 509 SITE 1 AC7 3 PRO A 93 ASP A 94 IOD A 507 SITE 1 AC8 13 CYS B 63 SER B 64 SER B 125 ASN B 127 SITE 2 AC8 13 GLU B 161 SER B 165 LYS B 229 THR B 230 SITE 3 AC8 13 GLY B 231 THR B 232 ARG B 238 HOH B 601 SITE 4 AC8 13 HOH B 640 SITE 1 AC9 1 ARG B 204 SITE 1 BC1 2 GLN A 210 ARG B 105 SITE 1 BC2 3 LYS B 149 GLN B 280 HOH B 753 SITE 1 BC3 3 GLY B 92 ASP B 94 ARG B 135 SITE 1 BC4 1 LYS B 187 SITE 1 BC5 1 THR B 177 SITE 1 BC6 2 ALA B 57 GLN B 58 SITE 1 BC7 2 LYS B 160 GLU B 163 SITE 1 BC8 1 THR B 113 CRYST1 42.940 81.240 71.930 90.00 102.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023288 0.000000 0.004967 0.00000 SCALE2 0.000000 0.012309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014215 0.00000