HEADER HYDROLASE 24-SEP-12 4H9D TITLE CRYSTAL STRUCTURE OF MN-DEPENDENT GME HNH NICKING ENDONUCLEASE FROM TITLE 2 GEOBACTER METALLIREDUCENS GS-15, NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM (NESG) TARGET GMR87 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNH ENDONUCLEASE; COMPND 3 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER METALLIREDUCENS; SOURCE 3 ORGANISM_TAXID: 269799; SOURCE 4 STRAIN: GS-15 / ATCC 53774 / DSM 7210 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), NICKING KEYWDS 3 ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,Y.CHEN,J.SEETHARAMAN,F.FANG,R.XIAO,K.CUNNINGHAM,L.MA,L.OWENS, AUTHOR 2 C.X.CHEN,J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 1 10-OCT-12 4H9D 0 SPRSDE 10-OCT-12 4H9D 2QGP JRNL AUTH A.KUZIN,Y.CHEN,J.SEETHARAMAN,F.FANG,R.XIAO,K.CUNNINGHAM, JRNL AUTH 2 L.MA,L.OWENS,C.X.CHEN,J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE, JRNL AUTH 3 J.F.HUNT,L.TONG JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET GMR87 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_988) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 12105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1010 - 4.1243 1.00 3040 157 0.1977 0.2232 REMARK 3 2 4.1243 - 3.2741 0.99 2898 143 0.2404 0.2351 REMARK 3 3 3.2741 - 2.8604 0.99 2831 148 0.2728 0.2879 REMARK 3 4 2.8604 - 2.5989 0.96 2756 132 0.3316 0.3839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 80.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.66980 REMARK 3 B22 (A**2) : 44.13320 REMARK 3 B33 (A**2) : -20.46340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2281 REMARK 3 ANGLE : 1.297 3073 REMARK 3 CHIRALITY : 0.094 314 REMARK 3 PLANARITY : 0.008 400 REMARK 3 DIHEDRAL : 17.332 900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): -3.8005 -21.7128 -28.3897 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.3374 REMARK 3 T33: 0.3590 T12: -0.0003 REMARK 3 T13: -0.0252 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 0.0865 L22: 0.3864 REMARK 3 L33: 0.7037 L12: 0.0028 REMARK 3 L13: -0.0703 L23: 0.5011 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.1243 S13: 0.2270 REMARK 3 S21: 0.1406 S22: 0.0427 S23: -0.0468 REMARK 3 S31: 0.3031 S32: -0.0834 S33: 0.0076 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5), RESERVOIR SOLUTION: MG- REMARK 280 SULFATE 0.2M, PEG 8000 20% (V/V), TRIS-HCL 0.1M, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.69250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.55800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.69250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.55800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.69250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.55800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.69250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.55800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER,23.9 KD,91% REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 98 REMARK 465 PRO A 99 REMARK 465 SER A 100 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 GLU A 103 REMARK 465 GLY A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 TYR B 3 REMARK 465 PHE B 4 REMARK 465 ILE B 5 REMARK 465 GLU B 96 REMARK 465 SER B 97 REMARK 465 GLU B 98 REMARK 465 PRO B 99 REMARK 465 SER B 100 REMARK 465 ASP B 101 REMARK 465 GLY B 102 REMARK 465 GLU B 103 REMARK 465 GLY B 104 REMARK 465 LEU B 105 REMARK 465 GLU B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 MSE C 1 REMARK 465 ASN C 2 REMARK 465 TYR C 3 REMARK 465 PHE C 4 REMARK 465 ILE C 5 REMARK 465 VAL C 6 REMARK 465 GLU C 7 REMARK 465 VAL C 8 REMARK 465 SER C 9 REMARK 465 GLU C 10 REMARK 465 GLN C 11 REMARK 465 GLU C 12 REMARK 465 VAL C 13 REMARK 465 LYS C 14 REMARK 465 GLU C 96 REMARK 465 SER C 97 REMARK 465 GLU C 98 REMARK 465 PRO C 99 REMARK 465 SER C 100 REMARK 465 ASP C 101 REMARK 465 GLY C 102 REMARK 465 GLU C 103 REMARK 465 GLY C 104 REMARK 465 LEU C 105 REMARK 465 GLU C 106 REMARK 465 HIS C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE A 5 CD1 ILE A 5 2545 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 47 -33.15 -38.26 REMARK 500 PRO A 85 -27.49 -35.81 REMARK 500 ASP A 93 0.27 -53.38 REMARK 500 GLU A 96 -100.92 -79.86 REMARK 500 LYS B 17 3.10 -57.51 REMARK 500 ARG B 24 -8.27 -56.04 REMARK 500 LEU B 55 -71.61 -67.28 REMARK 500 ASN B 68 -4.04 -151.78 REMARK 500 GLU B 75 -72.82 -46.34 REMARK 500 LYS C 17 -6.97 -58.27 REMARK 500 GLU C 18 -72.18 -74.15 REMARK 500 ALA C 20 -78.80 -50.91 REMARK 500 PRO C 57 143.25 -34.56 REMARK 500 TYR C 82 -32.65 -145.94 REMARK 500 LEU C 84 159.68 -49.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 41 SG REMARK 620 2 CYS A 38 SG 102.3 REMARK 620 3 CYS A 73 SG 120.0 108.1 REMARK 620 4 CYS A 76 SG 106.5 111.3 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 38 SG REMARK 620 2 CYS B 73 SG 113.2 REMARK 620 3 CYS B 41 SG 99.7 129.3 REMARK 620 4 CYS B 76 SG 115.7 104.9 93.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 41 SG REMARK 620 2 CYS C 38 SG 105.5 REMARK 620 3 CYS C 76 SG 111.9 102.0 REMARK 620 4 CYS C 73 SG 126.1 102.5 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 34 O REMARK 620 2 LYS A 81 O 89.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QGP RELATED DB: PDB REMARK 900 100% IDENTITY; TO BE OBSOLETE REMARK 900 RELATED ID: NESG-GMR87 RELATED DB: TARGETTRACK DBREF 4H9D A 1 104 UNP Q39X46 Q39X46_GEOMG 1 104 DBREF 4H9D B 1 104 UNP Q39X46 Q39X46_GEOMG 1 104 DBREF 4H9D C 1 104 UNP Q39X46 Q39X46_GEOMG 1 104 SEQADV 4H9D LEU A 105 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D GLU A 106 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS A 107 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS A 108 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS A 109 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS A 110 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS A 111 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS A 112 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D LEU B 105 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D GLU B 106 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS B 107 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS B 108 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS B 109 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS B 110 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS B 111 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS B 112 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D LEU C 105 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D GLU C 106 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS C 107 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS C 108 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS C 109 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS C 110 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS C 111 UNP Q39X46 EXPRESSION TAG SEQADV 4H9D HIS C 112 UNP Q39X46 EXPRESSION TAG SEQRES 1 A 112 MSE ASN TYR PHE ILE VAL GLU VAL SER GLU GLN GLU VAL SEQRES 2 A 112 LYS ARG GLU LYS GLU LYS ALA ARG GLU LEU ARG ARG SER SEQRES 3 A 112 GLN TRP TRP LYS ASN ARG ILE ALA ARG GLY ILE CYS HIS SEQRES 4 A 112 TYR CYS GLY GLU ILE PHE PRO PRO GLU GLU LEU THR MSE SEQRES 5 A 112 ASP HIS LEU VAL PRO VAL VAL ARG GLY GLY LYS SER THR SEQRES 6 A 112 ARG GLY ASN VAL VAL PRO ALA CYS LYS GLU CYS ASN ASN SEQRES 7 A 112 ARG LYS LYS TYR LEU LEU PRO VAL GLU TRP GLU GLU TYR SEQRES 8 A 112 LEU ASP SER LEU GLU SER GLU PRO SER ASP GLY GLU GLY SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 112 MSE ASN TYR PHE ILE VAL GLU VAL SER GLU GLN GLU VAL SEQRES 2 B 112 LYS ARG GLU LYS GLU LYS ALA ARG GLU LEU ARG ARG SER SEQRES 3 B 112 GLN TRP TRP LYS ASN ARG ILE ALA ARG GLY ILE CYS HIS SEQRES 4 B 112 TYR CYS GLY GLU ILE PHE PRO PRO GLU GLU LEU THR MSE SEQRES 5 B 112 ASP HIS LEU VAL PRO VAL VAL ARG GLY GLY LYS SER THR SEQRES 6 B 112 ARG GLY ASN VAL VAL PRO ALA CYS LYS GLU CYS ASN ASN SEQRES 7 B 112 ARG LYS LYS TYR LEU LEU PRO VAL GLU TRP GLU GLU TYR SEQRES 8 B 112 LEU ASP SER LEU GLU SER GLU PRO SER ASP GLY GLU GLY SEQRES 9 B 112 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 112 MSE ASN TYR PHE ILE VAL GLU VAL SER GLU GLN GLU VAL SEQRES 2 C 112 LYS ARG GLU LYS GLU LYS ALA ARG GLU LEU ARG ARG SER SEQRES 3 C 112 GLN TRP TRP LYS ASN ARG ILE ALA ARG GLY ILE CYS HIS SEQRES 4 C 112 TYR CYS GLY GLU ILE PHE PRO PRO GLU GLU LEU THR MSE SEQRES 5 C 112 ASP HIS LEU VAL PRO VAL VAL ARG GLY GLY LYS SER THR SEQRES 6 C 112 ARG GLY ASN VAL VAL PRO ALA CYS LYS GLU CYS ASN ASN SEQRES 7 C 112 ARG LYS LYS TYR LEU LEU PRO VAL GLU TRP GLU GLU TYR SEQRES 8 C 112 LEU ASP SER LEU GLU SER GLU PRO SER ASP GLY GLU GLY SEQRES 9 C 112 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4H9D MSE A 1 MET SELENOMETHIONINE MODRES 4H9D MSE A 52 MET SELENOMETHIONINE MODRES 4H9D MSE B 52 MET SELENOMETHIONINE MODRES 4H9D MSE C 52 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 52 8 HET MSE B 52 8 HET MSE C 52 8 HET ZN A 201 1 HET ZN B 201 1 HET MG B 202 1 HET ZN C 201 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 ZN 3(ZN 2+) FORMUL 6 MG MG 2+ FORMUL 8 HOH *13(H2 O) HELIX 1 1 SER A 9 ARG A 25 1 17 HELIX 2 2 SER A 26 ARG A 35 1 10 HELIX 3 3 PRO A 46 GLU A 48 5 3 HELIX 4 4 PRO A 57 GLY A 61 5 5 HELIX 5 5 LYS A 74 LEU A 83 1 10 HELIX 6 6 LEU A 84 ASP A 93 1 10 HELIX 7 7 SER B 9 LYS B 14 1 6 HELIX 8 8 LYS B 14 ARG B 24 1 11 HELIX 9 9 SER B 26 GLY B 36 1 11 HELIX 10 10 PRO B 46 GLU B 48 5 3 HELIX 11 11 PRO B 57 GLY B 61 5 5 HELIX 12 12 LYS B 74 LEU B 83 1 10 HELIX 13 13 LEU B 84 ASP B 93 1 10 HELIX 14 14 GLU C 16 ARG C 24 1 9 HELIX 15 15 SER C 26 GLY C 36 1 11 HELIX 16 16 THR C 65 GLY C 67 5 3 HELIX 17 17 LYS C 74 LYS C 81 1 8 HELIX 18 18 LEU C 84 SER C 94 1 11 SHEET 1 A 2 LEU A 50 HIS A 54 0 SHEET 2 A 2 VAL A 69 CYS A 73 -1 O VAL A 70 N ASP A 53 SHEET 1 B 2 LEU B 50 HIS B 54 0 SHEET 2 B 2 VAL B 69 CYS B 73 -1 O ALA B 72 N THR B 51 SHEET 1 C 2 LEU C 50 HIS C 54 0 SHEET 2 C 2 VAL C 69 CYS C 73 -1 O VAL C 70 N ASP C 53 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C THR A 51 N MSE A 52 1555 1555 1.32 LINK C MSE A 52 N ASP A 53 1555 1555 1.33 LINK C THR B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N ASP B 53 1555 1555 1.32 LINK C THR C 51 N MSE C 52 1555 1555 1.33 LINK C MSE C 52 N ASP C 53 1555 1555 1.33 LINK SG CYS A 41 ZN ZN A 201 1555 1555 2.31 LINK SG CYS A 38 ZN ZN A 201 1555 1555 2.31 LINK SG CYS B 38 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 73 ZN ZN B 201 1555 1555 2.33 LINK SG CYS C 41 ZN ZN C 201 1555 1555 2.40 LINK SG CYS B 41 ZN ZN B 201 1555 1555 2.46 LINK SG CYS B 76 ZN ZN B 201 1555 1555 2.48 LINK SG CYS C 38 ZN ZN C 201 1555 1555 2.49 LINK SG CYS A 73 ZN ZN A 201 1555 1555 2.54 LINK SG CYS C 76 ZN ZN C 201 1555 1555 2.54 LINK SG CYS A 76 ZN ZN A 201 1555 1555 2.54 LINK SG CYS C 73 ZN ZN C 201 1555 1555 2.55 LINK O ALA B 34 MG MG B 202 1555 1555 2.61 LINK O LYS A 81 MG MG B 202 1555 1555 2.89 SITE 1 AC1 4 CYS A 38 CYS A 41 CYS A 73 CYS A 76 SITE 1 AC2 4 CYS B 38 CYS B 41 CYS B 73 CYS B 76 SITE 1 AC3 3 LYS A 81 ALA B 34 ARG B 35 SITE 1 AC4 4 CYS C 38 CYS C 41 CYS C 73 CYS C 76 CRYST1 40.674 83.385 225.116 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004442 0.00000 HETATM 1 N MSE A 1 -10.698 -49.102 -32.657 1.00121.43 N ANISOU 1 N MSE A 1 17726 14909 13502 -890 145 969 N HETATM 2 CA MSE A 1 -10.142 -48.459 -33.878 1.00115.64 C ANISOU 2 CA MSE A 1 16871 14205 12860 -835 119 1017 C HETATM 3 C MSE A 1 -8.628 -48.545 -33.879 1.00110.16 C ANISOU 3 C MSE A 1 16207 13467 12181 -721 55 1032 C HETATM 4 O MSE A 1 -7.963 -47.942 -33.039 1.00108.55 O ANISOU 4 O MSE A 1 16034 13246 11964 -670 19 1030 O HETATM 5 CB MSE A 1 -10.550 -46.985 -33.949 1.00116.75 C ANISOU 5 CB MSE A 1 16902 14401 13055 -859 127 1041 C HETATM 6 CG MSE A 1 -12.040 -46.730 -33.800 1.00121.32 C ANISOU 6 CG MSE A 1 17448 15031 13617 -974 188 1020 C HETATM 7 SE MSE A 1 -13.137 -47.842 -34.942 1.00211.18 SE ANISOU 7 SE MSE A 1 28806 26433 24998 -1050 238 1004 SE HETATM 8 CE MSE A 1 -13.874 -49.027 -33.603 1.00136.42 C ANISOU 8 CE MSE A 1 19497 16925 15410 -1130 278 937 C