HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-SEP-12 4HAB TITLE CRYSTAL STRUCTURE OF PLK1 POLO-BOX DOMAIN IN COMPLEX WITH PL-49 CAVEAT 4HAB MAIN CHAIN C-N BOND DISTANCES ARE OUTSIDE OF ACCEPTED RANGE CAVEAT 2 4HAB IN CHAINS D,E,F COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 5 13, STPK13; COMPND 6 EC: 2.7.11.21; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PL-49; COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK, PLK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: SYNTHETIC PEPTIDE PL-49 KEYWDS POLO-BOX DOMAIN, PHOSPHOPROTEIN-BINDING DOMAIN, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.C.LEE,J.H.SONG,H.Y.KIM REVDAT 4 21-DEC-22 4HAB 1 REMARK LINK REVDAT 3 15-NOV-17 4HAB 1 SOURCE REMARK REVDAT 2 22-MAY-13 4HAB 1 JRNL REVDAT 1 03-APR-13 4HAB 0 JRNL AUTH R.N.MURUGAN,J.E.PARK,D.LIM,M.AHN,C.CHEONG,T.KWON,K.Y.NAM, JRNL AUTH 2 S.H.CHOI,B.Y.KIM,D.Y.YOON,M.B.YAFFE,D.Y.YU,K.S.LEE,J.K.BANG JRNL TITL DEVELOPMENT OF CYCLIC PEPTOMER INHIBITORS TARGETING THE JRNL TITL 2 POLO-BOX DOMAIN OF POLO-LIKE KINASE 1. JRNL REF BIOORG.MED.CHEM. V. 21 2623 2013 JRNL REFN ISSN 0968-0896 JRNL PMID 23498919 JRNL DOI 10.1016/J.BMC.2013.02.020 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 32176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2921 REMARK 3 BIN R VALUE (WORKING SET) : 0.3619 REMARK 3 BIN FREE R VALUE : 0.3585 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.14600 REMARK 3 B22 (A**2) : 8.14600 REMARK 3 B33 (A**2) : -16.29100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.391 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.446 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.779 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.801 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 53.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : CAPPING.PAR REMARK 3 PARAMETER FILE 7 : TPO.PAR REMARK 3 PARAMETER FILE 8 : CXS.PAR REMARK 3 PARAMETER FILE 9 : MC6.PAR REMARK 3 PARAMETER FILE 10 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR:CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : CAPPING.TOP REMARK 3 TOPOLOGY FILE 7 : TPO.TOP REMARK 3 TOPOLOGY FILE 8 : CXS.TOP REMARK 3 TOPOLOGY FILE 9 : MC6.TOP REMARK 3 TOPOLOGY FILE 10 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : UGUI REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 88.277 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPS PH 8, 0.2M LISO4, 0.8M REMARK 280 K2HPO4 NAH2PO4, VAPOR DIFFUSION, TEMPERATURE 293K, PH 10.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.29000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.52150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.52150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 180.43500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.52150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.52150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.14500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.52150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.52150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 180.43500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.52150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.52150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.14500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.29000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PL-49 IS PEPTIDE-LIKE, A MEMBER OF ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PL-49 REMARK 400 CHAIN: D, E, F REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 371 REMARK 465 CYS B 372 REMARK 465 SER B 467 REMARK 465 HIS B 468 REMARK 465 PRO B 469 REMARK 465 ASP C 371 REMARK 465 CYS C 372 REMARK 465 PRO C 389 REMARK 465 SER C 390 REMARK 465 GLU C 391 REMARK 465 ARG C 392 REMARK 465 GLY C 393 REMARK 465 LEU C 394 REMARK 465 VAL C 395 REMARK 465 ARG C 396 REMARK 465 GLN C 397 REMARK 465 GLU C 398 REMARK 465 GLU C 399 REMARK 465 ALA C 400 REMARK 465 PRO C 403 REMARK 465 ALA C 404 REMARK 465 CYS C 405 REMARK 465 VAL C 465 REMARK 465 SER C 466 REMARK 465 SER C 467 REMARK 465 HIS C 468 REMARK 465 PRO C 469 REMARK 465 GLY C 502 REMARK 465 ASP C 503 REMARK 465 GLU C 504 REMARK 465 LEU C 505 REMARK 465 ALA C 506 REMARK 465 ARG C 507 REMARK 465 MET C 547 REMARK 465 ALA C 548 REMARK 465 ALA C 549 REMARK 465 GLU C 568 REMARK 465 GLU C 569 REMARK 465 TYR C 570 REMARK 465 GLY C 571 REMARK 465 CYS C 572 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 11Q F 1 CX C1 C6 C5 C4 C3 C2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 11Q D 1 CA - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 11Q E 1 O - C - N ANGL. DEV. = -22.6 DEGREES REMARK 500 MET E 6 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 11Q F 1 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 402 89.36 -158.16 REMARK 500 SER A 418 0.72 -60.35 REMARK 500 TYR A 421 -66.48 -150.95 REMARK 500 ASN A 446 21.84 -68.45 REMARK 500 ASP A 449 -39.63 -149.63 REMARK 500 SER A 467 53.34 -107.58 REMARK 500 PRO A 469 -178.38 -57.93 REMARK 500 GLU A 501 32.05 -81.40 REMARK 500 THR A 517 -165.78 -124.79 REMARK 500 SER A 592 43.24 -99.85 REMARK 500 LYS B 388 74.81 32.04 REMARK 500 ALA B 404 0.96 -65.12 REMARK 500 TRP B 410 157.65 175.80 REMARK 500 SER B 418 -6.69 -57.87 REMARK 500 TYR B 421 -54.80 -148.89 REMARK 500 ASP B 438 31.43 -79.40 REMARK 500 ASP B 457 8.01 -66.69 REMARK 500 SER B 471 -5.07 -58.91 REMARK 500 LEU B 472 17.14 -141.50 REMARK 500 THR B 513 175.84 177.12 REMARK 500 GLU B 569 -66.18 -96.89 REMARK 500 CYS B 572 -162.63 -119.25 REMARK 500 SER B 592 -84.29 -59.80 REMARK 500 SER C 387 -81.20 -73.46 REMARK 500 TYR C 421 -47.55 -132.84 REMARK 500 SER C 439 57.52 90.85 REMARK 500 LEU C 442 112.69 -164.95 REMARK 500 ASP C 449 -44.12 171.58 REMARK 500 GLN C 452 78.10 177.67 REMARK 500 GLU C 455 176.92 -55.36 REMARK 500 ASP C 457 44.65 -108.66 REMARK 500 THR C 459 94.92 -44.75 REMARK 500 GLU C 460 -155.86 -64.95 REMARK 500 SER C 461 163.47 163.85 REMARK 500 LEU C 463 -153.04 -151.55 REMARK 500 THR C 517 -169.26 -115.54 REMARK 500 GLN C 536 -73.95 -55.86 REMARK 500 HIS C 538 30.13 73.88 REMARK 500 PRO C 545 34.68 -79.20 REMARK 500 ASP C 554 -161.82 -68.67 REMARK 500 ARG C 557 83.98 72.73 REMARK 500 PHE C 559 -105.58 -62.05 REMARK 500 ARG C 560 92.60 67.44 REMARK 500 LEU C 564 -38.86 -32.95 REMARK 500 LEU C 566 -138.13 -68.11 REMARK 500 LEU F 2 161.64 -29.16 REMARK 500 HIS F 3 -179.85 173.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 11Q F 1 LEU F 2 145.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 11Q E 1 37.33 REMARK 500 11Q F 1 16.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS C 602 DBREF 4HAB A 371 593 UNP P53350 PLK1_HUMAN 371 593 DBREF 4HAB B 371 593 UNP P53350 PLK1_HUMAN 371 593 DBREF 4HAB C 371 593 UNP P53350 PLK1_HUMAN 371 593 DBREF 4HAB D 1 7 PDB 4HAB 4HAB 1 7 DBREF 4HAB E 1 7 PDB 4HAB 4HAB 1 7 DBREF 4HAB F 1 7 PDB 4HAB 4HAB 1 7 SEQRES 1 A 223 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 2 A 223 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 3 A 223 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 4 A 223 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 5 A 223 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 6 A 223 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 7 A 223 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 8 A 223 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 9 A 223 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 10 A 223 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 11 A 223 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 12 A 223 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 13 A 223 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 14 A 223 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 15 A 223 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 16 A 223 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 17 A 223 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 18 A 223 SER SER SEQRES 1 B 223 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 2 B 223 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 3 B 223 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 4 B 223 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 5 B 223 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 6 B 223 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 7 B 223 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 8 B 223 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 9 B 223 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 10 B 223 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 11 B 223 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 12 B 223 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 13 B 223 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 14 B 223 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 15 B 223 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 16 B 223 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 17 B 223 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 18 B 223 SER SER SEQRES 1 C 223 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 2 C 223 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 3 C 223 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 4 C 223 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 5 C 223 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 6 C 223 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 7 C 223 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 8 C 223 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 9 C 223 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 10 C 223 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 11 C 223 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 12 C 223 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 13 C 223 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 14 C 223 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 15 C 223 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 16 C 223 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 17 C 223 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 18 C 223 SER SER SEQRES 1 D 7 11Q LEU HIS SER TPO MET NH2 SEQRES 1 E 7 11Q LEU HIS SER TPO MET NH2 SEQRES 1 F 7 11Q LEU HIS SER TPO MET NH2 MODRES 4HAB 11Q D 1 PRO 1-(CYCLOHEXYLMETHYL)-L-PROLINE MODRES 4HAB TPO D 5 THR PHOSPHOTHREONINE MODRES 4HAB 11Q E 1 PRO 1-(CYCLOHEXYLMETHYL)-L-PROLINE MODRES 4HAB TPO E 5 THR PHOSPHOTHREONINE MODRES 4HAB 11Q F 1 PRO 1-(CYCLOHEXYLMETHYL)-L-PROLINE MODRES 4HAB TPO F 5 THR PHOSPHOTHREONINE HET 11Q D 1 14 HET TPO D 5 11 HET NH2 D 7 1 HET 11Q E 1 14 HET TPO E 5 11 HET NH2 E 7 1 HET 11Q F 1 7 HET TPO F 5 11 HET NH2 F 7 1 HET CXS A 601 14 HET CXS A 602 14 HET PO4 A 603 5 HET CXS B 601 14 HET CXS C 601 14 HET CXS C 602 14 HETNAM 11Q 1-(CYCLOHEXYLMETHYL)-L-PROLINE HETNAM TPO PHOSPHOTHREONINE HETNAM NH2 AMINO GROUP HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM PO4 PHOSPHATE ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 4 11Q 3(C12 H21 N O2) FORMUL 4 TPO 3(C4 H10 N O6 P) FORMUL 4 NH2 3(H2 N) FORMUL 7 CXS 5(C9 H19 N O3 S) FORMUL 9 PO4 O4 P 3- FORMUL 13 HOH *56(H2 O) HELIX 1 1 ASP A 371 SER A 387 1 17 HELIX 2 2 LYS A 388 ARG A 392 5 5 HELIX 3 3 ARG A 396 GLU A 401 5 6 HELIX 4 4 ASP A 402 ILE A 406 5 5 HELIX 5 5 LEU A 472 LEU A 490 1 19 HELIX 6 6 LEU A 564 GLY A 571 1 8 HELIX 7 7 CYS A 573 SER A 592 1 20 HELIX 8 8 LEU B 374 ALA B 386 1 13 HELIX 9 9 ARG B 396 GLU B 401 5 6 HELIX 10 10 ASP B 402 ILE B 406 5 5 HELIX 11 11 LEU B 472 LEU B 490 1 19 HELIX 12 12 LEU B 564 GLY B 571 1 8 HELIX 13 13 CYS B 573 SER B 593 1 21 HELIX 14 14 LEU C 374 LYS C 388 1 15 HELIX 15 15 LEU C 472 LEU C 490 1 19 HELIX 16 16 LYS C 574 SER C 592 1 19 SHEET 1 A 6 VAL A 411 ASP A 416 0 SHEET 2 A 6 GLY A 422 LEU A 427 -1 O GLN A 426 N LYS A 413 SHEET 3 A 6 VAL A 432 PHE A 436 -1 O GLY A 433 N TYR A 425 SHEET 4 A 6 ARG A 441 LEU A 444 -1 O LEU A 444 N VAL A 432 SHEET 5 A 6 SER A 450 ILE A 454 -1 O ILE A 454 N ARG A 441 SHEET 6 A 6 GLU A 460 THR A 464 -1 O LEU A 463 N LEU A 451 SHEET 1 B 6 LEU A 511 ARG A 516 0 SHEET 2 B 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 B 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 B 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 B 6 ALA A 549 ILE A 553 -1 O THR A 551 N ILE A 542 SHEET 6 B 6 PHE A 559 ARG A 563 -1 O ARG A 560 N TYR A 552 SHEET 1 C 6 VAL B 411 ASP B 416 0 SHEET 2 C 6 GLY B 422 LEU B 427 -1 O GLY B 424 N VAL B 415 SHEET 3 C 6 VAL B 432 PHE B 436 -1 O GLY B 433 N TYR B 425 SHEET 4 C 6 ARG B 441 LEU B 444 -1 O LEU B 444 N VAL B 432 SHEET 5 C 6 SER B 450 ILE B 454 -1 O ILE B 454 N ARG B 441 SHEET 6 C 6 GLU B 460 THR B 464 -1 O LEU B 463 N LEU B 451 SHEET 1 D 6 LEU B 511 ARG B 516 0 SHEET 2 D 6 ALA B 520 LEU B 525 -1 O HIS B 524 N ARG B 512 SHEET 3 D 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 D 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 D 6 ALA B 549 ILE B 553 -1 O ALA B 549 N CYS B 544 SHEET 6 D 6 PHE B 559 ARG B 563 -1 O ARG B 560 N TYR B 552 SHEET 1 E 5 VAL C 411 ASP C 416 0 SHEET 2 E 5 GLY C 422 LEU C 427 -1 O GLY C 424 N VAL C 415 SHEET 3 E 5 VAL C 432 PHE C 436 -1 O LEU C 435 N LEU C 423 SHEET 4 E 5 ARG C 441 LEU C 444 -1 O LEU C 444 N VAL C 432 SHEET 5 E 5 TYR C 453 ILE C 454 -1 O ILE C 454 N ARG C 441 SHEET 1 F 5 LEU C 511 ARG C 516 0 SHEET 2 F 5 ALA C 520 LEU C 525 -1 O ILE C 522 N PHE C 515 SHEET 3 F 5 VAL C 530 PHE C 534 -1 O GLN C 531 N LEU C 523 SHEET 4 F 5 LYS C 540 LEU C 543 -1 O LEU C 543 N VAL C 530 SHEET 5 F 5 THR C 551 ILE C 553 -1 O ILE C 553 N LYS C 540 LINK C 11Q D 1 N LEU D 2 1555 1555 1.33 LINK C SER D 4 N TPO D 5 1555 1555 1.34 LINK C TPO D 5 N MET D 6 1555 1555 1.32 LINK C MET D 6 N NH2 D 7 1555 1555 1.32 LINK C 11Q E 1 N LEU E 2 1555 1555 1.33 LINK C SER E 4 N TPO E 5 1555 1555 1.34 LINK C TPO E 5 N MET E 6 1555 1555 1.33 LINK C MET E 6 N NH2 E 7 1555 1555 1.33 LINK C 11Q F 1 N LEU F 2 1555 1555 1.34 LINK C SER F 4 N TPO F 5 1555 1555 1.34 LINK C TPO F 5 N MET F 6 1555 1555 1.33 LINK C MET F 6 N NH2 F 7 1555 1555 1.32 SITE 1 AC1 6 PHE A 436 ASN A 437 TRP A 514 PHE A 515 SITE 2 AC1 6 ARG A 516 CXS A 602 SITE 1 AC2 6 PHE A 515 ARG A 516 CXS A 601 GLU B 504 SITE 2 AC2 6 LEU B 505 ALA B 506 SITE 1 AC3 6 ASN A 385 ARG A 584 HOH A 704 HOH A 725 SITE 2 AC3 6 HOH A 726 HIS C 538 SITE 1 AC4 5 ASN B 437 THR B 513 TRP B 514 PHE B 515 SITE 2 AC4 5 ARG B 516 SITE 1 AC5 5 LEU B 394 VAL B 395 PHE C 534 SER C 578 SITE 2 AC5 5 ARG C 581 SITE 1 AC6 3 THR C 513 TRP C 514 ARG C 516 CRYST1 95.043 95.043 240.580 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004157 0.00000