HEADER SUGAR BINDING PROTEIN 27-SEP-12 4HAN TITLE CRYSTAL STRUCTURE OF GALECTIN 8 WITH NDP52 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-155. 184-317; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN COMPND 8 2; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 372-385; COMPND 11 SYNONYM: ANTIGEN NUCLEAR DOT 52 KDA PROTEIN, NUCLEAR DOMAIN 10 COMPND 12 PROTEIN NDP52, NUCLEAR DOMAIN 10 PROTEIN 52, NUCLEAR DOT PROTEIN 52; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: CALCOCO2, NDP52; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, INNATE IMMUNITY, CARBOHYDRATE RECOGNITION DOMAIN (CRD), KEYWDS 2 AUTOPHAGY ADAPTER MOLECULE, NAD BINDING, NDP52 PEOPTIDE BINDING, KEYWDS 3 CYTOSOL, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.-W.KIM,S.B.HONG,J.H.KIM,D.H.KWON,H.K.SONG REVDAT 4 28-FEB-24 4HAN 1 REMARK SEQADV REVDAT 3 26-JUL-17 4HAN 1 SOURCE REVDAT 2 15-MAY-13 4HAN 1 JRNL REVDAT 1 20-MAR-13 4HAN 0 JRNL AUTH B.W.KIM,S.B.HONG,J.H.KIM,D.H.KWON,H.K.SONG JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF AUTOPHAGIC RECEPTOR JRNL TITL 2 NDP52 BY THE SUGAR RECEPTOR GALECTIN-8. JRNL REF NAT COMMUN V. 4 1613 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23511477 JRNL DOI 10.1038/NCOMMS2606 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1008 - 6.1407 0.99 2153 153 0.2058 0.1943 REMARK 3 2 6.1407 - 4.8768 1.00 2108 151 0.1871 0.1966 REMARK 3 3 4.8768 - 4.2611 1.00 2059 149 0.1444 0.1619 REMARK 3 4 4.2611 - 3.8719 1.00 2074 145 0.1600 0.1851 REMARK 3 5 3.8719 - 3.5945 1.00 2037 143 0.1776 0.2364 REMARK 3 6 3.5945 - 3.3827 1.00 2082 145 0.1821 0.1967 REMARK 3 7 3.3827 - 3.2134 1.00 2050 141 0.2024 0.2604 REMARK 3 8 3.2134 - 3.0736 0.99 2035 135 0.2133 0.2428 REMARK 3 9 3.0736 - 2.9553 0.98 2015 139 0.2227 0.2155 REMARK 3 10 2.9553 - 2.8533 0.98 1992 139 0.2230 0.2550 REMARK 3 11 2.8533 - 2.7641 0.97 1943 133 0.2268 0.2601 REMARK 3 12 2.7641 - 2.6851 0.96 2004 140 0.2329 0.3037 REMARK 3 13 2.6851 - 2.6145 0.96 1966 132 0.2426 0.2583 REMARK 3 14 2.6145 - 2.5507 0.95 1955 132 0.2514 0.3009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5031 REMARK 3 ANGLE : 1.532 6824 REMARK 3 CHIRALITY : 0.139 746 REMARK 3 PLANARITY : 0.004 874 REMARK 3 DIHEDRAL : 15.475 1845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1528 -6.0774 336.6088 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.3222 REMARK 3 T33: 0.4147 T12: 0.0507 REMARK 3 T13: -0.0224 T23: -0.1202 REMARK 3 L TENSOR REMARK 3 L11: 6.3648 L22: 0.6302 REMARK 3 L33: 3.7103 L12: -0.0978 REMARK 3 L13: -1.6492 L23: -1.5076 REMARK 3 S TENSOR REMARK 3 S11: -0.0761 S12: -0.3093 S13: -0.0866 REMARK 3 S21: 0.0457 S22: 0.1414 S23: -0.0356 REMARK 3 S31: 0.2217 S32: 0.0757 S33: -0.0280 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1822 1.9484 323.4845 REMARK 3 T TENSOR REMARK 3 T11: 0.3494 T22: 0.3786 REMARK 3 T33: 0.4316 T12: 0.1146 REMARK 3 T13: 0.0468 T23: -0.1348 REMARK 3 L TENSOR REMARK 3 L11: 1.3953 L22: 2.7024 REMARK 3 L33: 2.6176 L12: 0.2451 REMARK 3 L13: 0.7347 L23: -0.6995 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.2055 S13: 0.1759 REMARK 3 S21: -0.0836 S22: 0.0067 S23: 0.1311 REMARK 3 S31: -0.3301 S32: -0.0618 S33: -0.0616 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6022 -9.8489 347.2401 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: 0.6094 REMARK 3 T33: 0.3587 T12: -0.0167 REMARK 3 T13: 0.0536 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 4.2060 L22: 3.1215 REMARK 3 L33: 2.8089 L12: -0.3559 REMARK 3 L13: -0.4691 L23: 0.2543 REMARK 3 S TENSOR REMARK 3 S11: 0.0804 S12: 0.3922 S13: -0.3308 REMARK 3 S21: -0.0801 S22: -0.1474 S23: 0.2111 REMARK 3 S31: 0.1492 S32: -0.7435 S33: 0.0651 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6349 1.8234 355.9302 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.4267 REMARK 3 T33: 0.4177 T12: 0.0786 REMARK 3 T13: 0.1210 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.6405 L22: 1.2495 REMARK 3 L33: 2.5197 L12: 0.5867 REMARK 3 L13: 0.7154 L23: 0.2127 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: -0.0290 S13: -0.0304 REMARK 3 S21: -0.1515 S22: -0.0211 S23: -0.1139 REMARK 3 S31: -0.1170 S32: 0.1652 S33: -0.0777 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2312 -30.5188 334.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.5548 T22: 0.3346 REMARK 3 T33: 0.3743 T12: 0.1218 REMARK 3 T13: 0.0781 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.5675 L22: 3.2313 REMARK 3 L33: 3.0882 L12: -1.0117 REMARK 3 L13: -0.6088 L23: 0.6061 REMARK 3 S TENSOR REMARK 3 S11: -0.2180 S12: -0.2244 S13: -0.3732 REMARK 3 S21: 0.2137 S22: 0.1197 S23: 0.1565 REMARK 3 S31: 0.7384 S32: 0.2281 S33: 0.0558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 372 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6750 0.1140 334.6043 REMARK 3 T TENSOR REMARK 3 T11: 0.6501 T22: 0.8410 REMARK 3 T33: 0.3309 T12: 0.2997 REMARK 3 T13: 0.0783 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 1.3878 L22: 4.9001 REMARK 3 L33: 3.8071 L12: -2.4205 REMARK 3 L13: -1.8056 L23: 4.1678 REMARK 3 S TENSOR REMARK 3 S11: -0.1504 S12: 0.1618 S13: 0.3412 REMARK 3 S21: -0.1000 S22: 0.3177 S23: -0.0317 REMARK 3 S31: -0.3908 S32: -0.3180 S33: -0.1668 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 372 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2680 -22.9752 346.7688 REMARK 3 T TENSOR REMARK 3 T11: 0.4792 T22: 1.1741 REMARK 3 T33: 0.1762 T12: 0.1249 REMARK 3 T13: -0.1971 T23: -0.1258 REMARK 3 L TENSOR REMARK 3 L11: 0.1146 L22: 0.8645 REMARK 3 L33: 3.7666 L12: 0.1811 REMARK 3 L13: -0.1784 L23: 0.4301 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.4131 S13: 0.0134 REMARK 3 S21: 0.1159 S22: 0.1812 S23: -0.1514 REMARK 3 S31: -0.2246 S32: 0.1090 S33: 0.1165 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5, 30~34% (V/W) REMARK 280 PEG400, 200MM LISO4, AND 10MM NICOTINAMIDE ADENINE DINUCLEOTIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.83100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 209.66200 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 209.66200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.83100 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 381 REMARK 465 GLY C 382 REMARK 465 ILE C 383 REMARK 465 GLN C 384 REMARK 465 GLU C 385 REMARK 465 SER D 381 REMARK 465 GLY D 382 REMARK 465 ILE D 383 REMARK 465 GLN D 384 REMARK 465 GLU D 385 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 MET B 265 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 112 O HOH B 528 1.82 REMARK 500 O HOH B 594 O HOH B 602 1.83 REMARK 500 O HOH B 591 O HOH B 593 1.85 REMARK 500 O HOH A 643 O HOH A 670 1.88 REMARK 500 O HOH A 566 O HOH A 580 1.93 REMARK 500 O HOH A 586 O HOH A 588 1.94 REMARK 500 OD1 ASN A 306 O HOH A 562 1.97 REMARK 500 O HOH B 542 O HOH B 583 2.00 REMARK 500 O PRO A 260 O HOH A 567 2.01 REMARK 500 O HOH A 589 O HOH B 581 2.02 REMARK 500 O HOH B 558 O HOH B 583 2.02 REMARK 500 O HOH B 635 O HOH B 657 2.02 REMARK 500 O PRO A 194 O HOH A 596 2.02 REMARK 500 NE2 GLN A 9 O HOH A 655 2.02 REMARK 500 OE1 GLN A 26 O HOH A 629 2.03 REMARK 500 O HOH A 662 O HOH B 602 2.03 REMARK 500 O HOH A 506 O HOH A 524 2.03 REMARK 500 O HOH B 629 O HOH B 638 2.05 REMARK 500 ND2 ASN B 6 O HOH B 502 2.07 REMARK 500 OE2 GLU A 277 O HOH A 510 2.07 REMARK 500 O HOH B 585 O HOH B 586 2.08 REMARK 500 O HOH A 638 O HOH B 637 2.10 REMARK 500 O HOH A 591 O HOH A 592 2.11 REMARK 500 O HOH A 575 O HOH A 623 2.12 REMARK 500 OE2 GLU B 252 O HOH B 571 2.15 REMARK 500 OD1 ASN B 306 O HOH B 643 2.18 REMARK 500 O HOH B 647 O HOH B 650 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 72 -134.59 60.24 REMARK 500 ARG B 72 -131.94 57.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 402 DBREF 4HAN A 1 155 UNP O00214 LEG8_HUMAN 1 155 DBREF 4HAN A 184 317 UNP O00214 LEG8_HUMAN 184 317 DBREF 4HAN B 1 155 UNP O00214 LEG8_HUMAN 1 155 DBREF 4HAN B 184 317 UNP O00214 LEG8_HUMAN 184 317 DBREF 4HAN C 372 385 UNP Q13137 CACO2_HUMAN 372 385 DBREF 4HAN D 372 385 UNP Q13137 CACO2_HUMAN 372 385 SEQADV 4HAN GLY A -1 UNP O00214 EXPRESSION TAG SEQADV 4HAN SER A 0 UNP O00214 EXPRESSION TAG SEQADV 4HAN VAL A 56 UNP O00214 MET 56 CONFLICT SEQADV 4HAN HIS A 156 UNP O00214 LINKER SEQADV 4HAN MET A 157 UNP O00214 LINKER SEQADV 4HAN GLY B -1 UNP O00214 EXPRESSION TAG SEQADV 4HAN SER B 0 UNP O00214 EXPRESSION TAG SEQADV 4HAN VAL B 56 UNP O00214 MET 56 CONFLICT SEQADV 4HAN HIS B 156 UNP O00214 LINKER SEQADV 4HAN MET B 157 UNP O00214 LINKER SEQRES 1 A 293 GLY SER MET MET LEU SER LEU ASN ASN LEU GLN ASN ILE SEQRES 2 A 293 ILE TYR ASN PRO VAL ILE PRO PHE VAL GLY THR ILE PRO SEQRES 3 A 293 ASP GLN LEU ASP PRO GLY THR LEU ILE VAL ILE ARG GLY SEQRES 4 A 293 HIS VAL PRO SER ASP ALA ASP ARG PHE GLN VAL ASP LEU SEQRES 5 A 293 GLN ASN GLY SER SER VAL LYS PRO ARG ALA ASP VAL ALA SEQRES 6 A 293 PHE HIS PHE ASN PRO ARG PHE LYS ARG ALA GLY CYS ILE SEQRES 7 A 293 VAL CYS ASN THR LEU ILE ASN GLU LYS TRP GLY ARG GLU SEQRES 8 A 293 GLU ILE THR TYR ASP THR PRO PHE LYS ARG GLU LYS SER SEQRES 9 A 293 PHE GLU ILE VAL ILE MET VAL LEU LYS ASP LYS PHE GLN SEQRES 10 A 293 VAL ALA VAL ASN GLY LYS HIS THR LEU LEU TYR GLY HIS SEQRES 11 A 293 ARG ILE GLY PRO GLU LYS ILE ASP THR LEU GLY ILE TYR SEQRES 12 A 293 GLY LYS VAL ASN ILE HIS SER ILE GLY PHE SER PHE SER SEQRES 13 A 293 SER HIS MET ARG LEU PRO PHE ALA ALA ARG LEU ASN THR SEQRES 14 A 293 PRO MET GLY PRO GLY ARG THR VAL VAL VAL LYS GLY GLU SEQRES 15 A 293 VAL ASN ALA ASN ALA LYS SER PHE ASN VAL ASP LEU LEU SEQRES 16 A 293 ALA GLY LYS SER LYS ASP ILE ALA LEU HIS LEU ASN PRO SEQRES 17 A 293 ARG LEU ASN ILE LYS ALA PHE VAL ARG ASN SER PHE LEU SEQRES 18 A 293 GLN GLU SER TRP GLY GLU GLU GLU ARG ASN ILE THR SER SEQRES 19 A 293 PHE PRO PHE SER PRO GLY MET TYR PHE GLU MET ILE ILE SEQRES 20 A 293 TYR CYS ASP VAL ARG GLU PHE LYS VAL ALA VAL ASN GLY SEQRES 21 A 293 VAL HIS SER LEU GLU TYR LYS HIS ARG PHE LYS GLU LEU SEQRES 22 A 293 SER SER ILE ASP THR LEU GLU ILE ASN GLY ASP ILE HIS SEQRES 23 A 293 LEU LEU GLU VAL ARG SER TRP SEQRES 1 B 293 GLY SER MET MET LEU SER LEU ASN ASN LEU GLN ASN ILE SEQRES 2 B 293 ILE TYR ASN PRO VAL ILE PRO PHE VAL GLY THR ILE PRO SEQRES 3 B 293 ASP GLN LEU ASP PRO GLY THR LEU ILE VAL ILE ARG GLY SEQRES 4 B 293 HIS VAL PRO SER ASP ALA ASP ARG PHE GLN VAL ASP LEU SEQRES 5 B 293 GLN ASN GLY SER SER VAL LYS PRO ARG ALA ASP VAL ALA SEQRES 6 B 293 PHE HIS PHE ASN PRO ARG PHE LYS ARG ALA GLY CYS ILE SEQRES 7 B 293 VAL CYS ASN THR LEU ILE ASN GLU LYS TRP GLY ARG GLU SEQRES 8 B 293 GLU ILE THR TYR ASP THR PRO PHE LYS ARG GLU LYS SER SEQRES 9 B 293 PHE GLU ILE VAL ILE MET VAL LEU LYS ASP LYS PHE GLN SEQRES 10 B 293 VAL ALA VAL ASN GLY LYS HIS THR LEU LEU TYR GLY HIS SEQRES 11 B 293 ARG ILE GLY PRO GLU LYS ILE ASP THR LEU GLY ILE TYR SEQRES 12 B 293 GLY LYS VAL ASN ILE HIS SER ILE GLY PHE SER PHE SER SEQRES 13 B 293 SER HIS MET ARG LEU PRO PHE ALA ALA ARG LEU ASN THR SEQRES 14 B 293 PRO MET GLY PRO GLY ARG THR VAL VAL VAL LYS GLY GLU SEQRES 15 B 293 VAL ASN ALA ASN ALA LYS SER PHE ASN VAL ASP LEU LEU SEQRES 16 B 293 ALA GLY LYS SER LYS ASP ILE ALA LEU HIS LEU ASN PRO SEQRES 17 B 293 ARG LEU ASN ILE LYS ALA PHE VAL ARG ASN SER PHE LEU SEQRES 18 B 293 GLN GLU SER TRP GLY GLU GLU GLU ARG ASN ILE THR SER SEQRES 19 B 293 PHE PRO PHE SER PRO GLY MET TYR PHE GLU MET ILE ILE SEQRES 20 B 293 TYR CYS ASP VAL ARG GLU PHE LYS VAL ALA VAL ASN GLY SEQRES 21 B 293 VAL HIS SER LEU GLU TYR LYS HIS ARG PHE LYS GLU LEU SEQRES 22 B 293 SER SER ILE ASP THR LEU GLU ILE ASN GLY ASP ILE HIS SEQRES 23 B 293 LEU LEU GLU VAL ARG SER TRP SEQRES 1 C 14 PRO GLY LEU ALA TYR GLY ASN PRO TYR SER GLY ILE GLN SEQRES 2 C 14 GLU SEQRES 1 D 14 PRO GLY LEU ALA TYR GLY ASN PRO TYR SER GLY ILE GLN SEQRES 2 D 14 GLU HET NAD A 401 44 HET PEG A 402 7 HET PEG A 403 7 HET NAD B 401 44 HET PEG B 402 7 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 PEG 3(C4 H10 O3) FORMUL 10 HOH *351(H2 O) HELIX 1 1 GLY A 131 ILE A 135 5 5 HELIX 2 2 GLU A 296 ILE A 300 5 5 HELIX 3 3 GLY B 131 ILE B 135 5 5 HELIX 4 4 LEU B 234 LYS B 237 5 4 HELIX 5 5 GLU B 296 ILE B 300 5 5 SHEET 1 A12 LYS A 121 GLY A 127 0 SHEET 2 A12 LYS A 113 VAL A 118 -1 N VAL A 116 O LEU A 124 SHEET 3 A12 SER A 102 VAL A 109 -1 N VAL A 106 O ALA A 117 SHEET 4 A12 LEU A 32 HIS A 38 -1 N ILE A 35 O ILE A 105 SHEET 5 A12 ASN A 145 SER A 155 -1 O GLY A 150 N VAL A 34 SHEET 6 A12 MET A 1 TYR A 13 -1 N LEU A 8 O PHE A 153 SHEET 7 A12 MET B 1 TYR B 13 -1 O LEU B 5 N GLN A 9 SHEET 8 A12 ASN B 145 SER B 155 -1 O PHE B 153 N LEU B 8 SHEET 9 A12 THR B 31 HIS B 38 -1 N VAL B 34 O GLY B 150 SHEET 10 A12 SER B 102 VAL B 109 -1 O ILE B 105 N ILE B 35 SHEET 11 A12 LYS B 113 VAL B 118 -1 O GLN B 115 N MET B 108 SHEET 12 A12 LYS B 121 GLY B 127 -1 O TYR B 126 N PHE B 114 SHEET 1 B12 VAL A 285 LYS A 291 0 SHEET 2 B12 GLU A 277 VAL A 282 -1 N PHE A 278 O TYR A 290 SHEET 3 B12 TYR A 266 CYS A 273 -1 N TYR A 272 O LYS A 279 SHEET 4 B12 THR A 200 VAL A 207 -1 N VAL A 201 O ILE A 271 SHEET 5 B12 ILE A 309 TRP A 317 -1 O ARG A 315 N VAL A 202 SHEET 6 B12 MET A 1 TYR A 13 -1 N MET A 2 O SER A 316 SHEET 7 B12 MET B 1 TYR B 13 -1 O LEU B 5 N GLN A 9 SHEET 8 B12 ILE B 309 SER B 316 -1 O SER B 316 N MET B 2 SHEET 9 B12 THR B 200 VAL B 207 -1 N VAL B 202 O ARG B 315 SHEET 10 B12 TYR B 266 CYS B 273 -1 O ILE B 271 N VAL B 201 SHEET 11 B12 GLU B 277 VAL B 282 -1 O LYS B 279 N TYR B 272 SHEET 12 B12 VAL B 285 LYS B 291 -1 O LEU B 288 N VAL B 280 SHEET 1 C 6 PHE A 19 THR A 22 0 SHEET 2 C 6 THR A 137 GLY A 142 -1 O LEU A 138 N GLY A 21 SHEET 3 C 6 PHE A 46 GLN A 51 -1 N ASP A 49 O GLY A 139 SHEET 4 C 6 VAL A 62 ARG A 69 -1 O PHE A 64 N LEU A 50 SHEET 5 C 6 CYS A 75 ILE A 82 -1 O CYS A 75 N ARG A 69 SHEET 6 C 6 LYS A 85 TRP A 86 -1 O LYS A 85 N ILE A 82 SHEET 1 D 6 PHE A 19 THR A 22 0 SHEET 2 D 6 THR A 137 GLY A 142 -1 O LEU A 138 N GLY A 21 SHEET 3 D 6 PHE A 46 GLN A 51 -1 N ASP A 49 O GLY A 139 SHEET 4 D 6 VAL A 62 ARG A 69 -1 O PHE A 64 N LEU A 50 SHEET 5 D 6 CYS A 75 ILE A 82 -1 O CYS A 75 N ARG A 69 SHEET 6 D 6 GLU A 90 THR A 92 -1 O GLU A 90 N CYS A 78 SHEET 1 E 6 PHE A 187 ARG A 190 0 SHEET 2 E 6 THR A 302 GLY A 307 -1 O LEU A 303 N ALA A 189 SHEET 3 E 6 PHE A 214 ALA A 220 -1 N ASP A 217 O GLU A 304 SHEET 4 E 6 ASP A 225 ARG A 233 -1 O LEU A 230 N VAL A 216 SHEET 5 E 6 ALA A 238 LEU A 245 -1 O ALA A 238 N ARG A 233 SHEET 6 E 6 SER A 248 TRP A 249 -1 O SER A 248 N LEU A 245 SHEET 1 F 6 PHE B 19 THR B 22 0 SHEET 2 F 6 THR B 137 GLY B 142 -1 O LEU B 138 N GLY B 21 SHEET 3 F 6 PHE B 46 GLN B 51 -1 N GLN B 51 O THR B 137 SHEET 4 F 6 VAL B 62 ARG B 69 -1 O PHE B 64 N LEU B 50 SHEET 5 F 6 CYS B 75 ILE B 82 -1 O VAL B 77 N ASN B 67 SHEET 6 F 6 LYS B 85 TRP B 86 -1 O LYS B 85 N ILE B 82 SHEET 1 G 6 PHE B 19 THR B 22 0 SHEET 2 G 6 THR B 137 GLY B 142 -1 O LEU B 138 N GLY B 21 SHEET 3 G 6 PHE B 46 GLN B 51 -1 N GLN B 51 O THR B 137 SHEET 4 G 6 VAL B 62 ARG B 69 -1 O PHE B 64 N LEU B 50 SHEET 5 G 6 CYS B 75 ILE B 82 -1 O VAL B 77 N ASN B 67 SHEET 6 G 6 GLU B 90 THR B 92 -1 O GLU B 90 N CYS B 78 SHEET 1 H 6 PHE B 187 ARG B 190 0 SHEET 2 H 6 THR B 302 GLY B 307 -1 O ILE B 305 N PHE B 187 SHEET 3 H 6 PHE B 214 ALA B 220 -1 N ASP B 217 O GLU B 304 SHEET 4 H 6 ASP B 225 ARG B 233 -1 O LEU B 230 N VAL B 216 SHEET 5 H 6 ALA B 238 LEU B 245 -1 O ALA B 238 N ARG B 233 SHEET 6 H 6 SER B 248 TRP B 249 -1 O SER B 248 N LEU B 245 CISPEP 1 ILE A 17 PRO A 18 0 4.10 CISPEP 2 LYS A 57 PRO A 58 0 -4.99 CISPEP 3 LEU A 185 PRO A 186 0 -0.43 CISPEP 4 ILE B 17 PRO B 18 0 9.87 CISPEP 5 LYS B 57 PRO B 58 0 -1.01 CISPEP 6 LEU B 185 PRO B 186 0 1.38 SITE 1 AC1 14 ARG A 45 GLN A 47 ARG A 59 HIS A 65 SITE 2 AC1 14 ARG A 69 ASN A 79 TRP A 86 GLU A 89 SITE 3 AC1 14 TYR A 93 PEG A 402 HOH A 615 HOH A 668 SITE 4 AC1 14 HOH A 680 HOH A 685 SITE 1 AC2 3 ARG A 59 NAD A 401 HOH A 641 SITE 1 AC3 2 LYS A 279 TYR C 380 SITE 1 AC4 11 ARG B 45 GLN B 47 ARG B 59 HIS B 65 SITE 2 AC4 11 ARG B 69 ASN B 79 TRP B 86 GLU B 89 SITE 3 AC4 11 TYR B 93 PEG B 402 HOH B 556 SITE 1 AC5 3 TYR B 141 NAD B 401 HOH B 573 CRYST1 71.884 71.884 314.493 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013911 0.008032 0.000000 0.00000 SCALE2 0.000000 0.016063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003180 0.00000