HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-SEP-12 4HBR TITLE CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEINS (BACEGG_01429) TITLE 2 FROM BACTEROIDES EGGERTHII DSM 20697 AT 2.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-160; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES EGGERTHII; SOURCE 3 ORGANISM_TAXID: 483216; SOURCE 4 STRAIN: DSM 20697; SOURCE 5 GENE: BACEGG_01429, ZP_03458652.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS BETA LACTAMASE LIKE FOLD, DUF2874, PF11396 FAMILY PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 27-NOV-24 4HBR 1 REMARK REVDAT 3 01-FEB-23 4HBR 1 SEQADV LINK REVDAT 2 15-NOV-17 4HBR 1 REMARK REVDAT 1 27-FEB-13 4HBR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEINS JRNL TITL 2 (BACEGG_01429) FROM BACTEROIDES EGGERTHII DSM 20697 AT 2.40 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3461 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2117 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3280 REMARK 3 BIN R VALUE (WORKING SET) : 0.2105 REMARK 3 BIN FREE R VALUE : 0.2336 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.23 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 181 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.20010 REMARK 3 B22 (A**2) : 5.20010 REMARK 3 B33 (A**2) : -10.40030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.368 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4665 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6396 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2061 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 137 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 670 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4665 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 604 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5120 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - 160} REMARK 3 ORIGIN FOR THE GROUP (A): 71.0530 34.8170 -16.3287 REMARK 3 T TENSOR REMARK 3 T11: -0.0338 T22: -0.0652 REMARK 3 T33: -0.0977 T12: -0.2113 REMARK 3 T13: 0.0594 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.0747 L22: 2.9756 REMARK 3 L33: 2.1374 L12: 0.5483 REMARK 3 L13: -0.0507 L23: -0.6693 REMARK 3 S TENSOR REMARK 3 S11: -0.2726 S12: 0.4286 S13: -0.0720 REMARK 3 S21: -0.2110 S22: 0.1202 S23: -0.0280 REMARK 3 S31: 0.0938 S32: -0.0900 S33: 0.1524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|0 - 160} REMARK 3 ORIGIN FOR THE GROUP (A): 66.0862 2.3004 3.1929 REMARK 3 T TENSOR REMARK 3 T11: -0.0358 T22: -0.2874 REMARK 3 T33: 0.0138 T12: -0.0860 REMARK 3 T13: 0.0053 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 2.6291 L22: 4.9545 REMARK 3 L33: 3.0793 L12: 0.9510 REMARK 3 L13: -1.3977 L23: -0.1208 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.0208 S13: -0.3474 REMARK 3 S21: 0.3768 S22: -0.0270 S23: -0.4867 REMARK 3 S31: 0.1198 S32: 0.1551 S33: 0.1447 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {C|0 - 160} REMARK 3 ORIGIN FOR THE GROUP (A): 52.2439 2.7945 -16.4682 REMARK 3 T TENSOR REMARK 3 T11: -0.0478 T22: -0.1334 REMARK 3 T33: -0.1330 T12: -0.2298 REMARK 3 T13: -0.0411 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.9199 L22: 6.9000 REMARK 3 L33: 2.3775 L12: 0.7139 REMARK 3 L13: -0.6782 L23: 0.8956 REMARK 3 S TENSOR REMARK 3 S11: -0.1530 S12: 0.3854 S13: 0.1950 REMARK 3 S21: -0.7031 S22: 0.0305 S23: 0.4958 REMARK 3 S31: 0.1367 S32: -0.4305 S33: 0.1226 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {D|22 - 160} REMARK 3 ORIGIN FOR THE GROUP (A): 72.0723 26.4844 6.3325 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: -0.1946 REMARK 3 T33: -0.0710 T12: -0.1025 REMARK 3 T13: 0.0728 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.3156 L22: 3.8303 REMARK 3 L33: 1.7554 L12: 0.5312 REMARK 3 L13: -0.1388 L23: -0.1906 REMARK 3 S TENSOR REMARK 3 S11: 0.1511 S12: -0.1830 S13: -0.0543 REMARK 3 S21: 0.4092 S22: -0.0315 S23: -0.2571 REMARK 3 S31: -0.0564 S32: 0.0087 S33: -0.1195 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). REMARK 4 REMARK 4 4HBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : 0.72200 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M MAGNESIUM CHLORIDE, 10.00% REMARK 280 POLYETHYLENE GLYCOL 3000, 0.1M SODIUM CACODYLATE PH 6.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.08333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.04167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.04167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 100.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE B 127 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 48 -123.32 61.98 REMARK 500 GLU A 80 -39.42 71.69 REMARK 500 ASN A 152 55.30 37.39 REMARK 500 LYS B 48 -120.53 59.59 REMARK 500 GLU B 80 -37.74 67.70 REMARK 500 TYR B 151 -52.77 -129.01 REMARK 500 LYS C 48 -123.96 61.92 REMARK 500 GLU C 80 -37.51 69.16 REMARK 500 LYS D 48 -122.76 56.83 REMARK 500 GLU D 80 -37.47 69.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417680 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (22-160) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4HBR A 22 160 UNP B7AGA3 B7AGA3_9BACE 22 160 DBREF 4HBR B 22 160 UNP B7AGA3 B7AGA3_9BACE 22 160 DBREF 4HBR C 22 160 UNP B7AGA3 B7AGA3_9BACE 22 160 DBREF 4HBR D 22 160 UNP B7AGA3 B7AGA3_9BACE 22 160 SEQADV 4HBR GLY A 0 UNP B7AGA3 EXPRESSION TAG SEQADV 4HBR GLY B 0 UNP B7AGA3 EXPRESSION TAG SEQADV 4HBR GLY C 0 UNP B7AGA3 EXPRESSION TAG SEQADV 4HBR GLY D 0 UNP B7AGA3 EXPRESSION TAG SEQRES 1 A 140 GLY GLY TYR ALA PRO ASP SER VAL GLN ILE ALA LEU LYS SEQRES 2 A 140 LYS MSE TYR PRO THR ALA ALA GLY ILE ALA TRP SER GLN SEQRES 3 A 140 ASP LYS ALA TYR TYR VAL ALA ASP PHE VAL MSE ASN GLY SEQRES 4 A 140 PHE ASP THR ARG VAL TRP PHE THR PRO ASP ALA GLU TRP SEQRES 5 A 140 VAL MSE LYS GLN THR ASP TRP GLU THR LEU ASP GLU VAL SEQRES 6 A 140 PRO ALA ALA VAL PHE ASN ALA PHE ALA ALA SER GLU PHE SEQRES 7 A 140 SER ASP GLY VAL VAL GLN ASN VAL THR TRP VAL GLN PHE SEQRES 8 A 140 PRO GLU TRP GLN PRO ILE VAL ALA ILE GLN VAL GLY LYS SEQRES 9 A 140 PRO ASN MSE GLN MSE LYS TYR GLN ILE LEU PHE THR PRO SEQRES 10 A 140 LYS GLY GLU VAL LEU ARG GLN GLN ASN ILE THR ASN ALA SEQRES 11 A 140 TYR ASN THR LEU GLY ALA SER THR PHE LEU SEQRES 1 B 140 GLY GLY TYR ALA PRO ASP SER VAL GLN ILE ALA LEU LYS SEQRES 2 B 140 LYS MSE TYR PRO THR ALA ALA GLY ILE ALA TRP SER GLN SEQRES 3 B 140 ASP LYS ALA TYR TYR VAL ALA ASP PHE VAL MSE ASN GLY SEQRES 4 B 140 PHE ASP THR ARG VAL TRP PHE THR PRO ASP ALA GLU TRP SEQRES 5 B 140 VAL MSE LYS GLN THR ASP TRP GLU THR LEU ASP GLU VAL SEQRES 6 B 140 PRO ALA ALA VAL PHE ASN ALA PHE ALA ALA SER GLU PHE SEQRES 7 B 140 SER ASP GLY VAL VAL GLN ASN VAL THR TRP VAL GLN PHE SEQRES 8 B 140 PRO GLU TRP GLN PRO ILE VAL ALA ILE GLN VAL GLY LYS SEQRES 9 B 140 PRO ASN MSE GLN MSE LYS TYR GLN ILE LEU PHE THR PRO SEQRES 10 B 140 LYS GLY GLU VAL LEU ARG GLN GLN ASN ILE THR ASN ALA SEQRES 11 B 140 TYR ASN THR LEU GLY ALA SER THR PHE LEU SEQRES 1 C 140 GLY GLY TYR ALA PRO ASP SER VAL GLN ILE ALA LEU LYS SEQRES 2 C 140 LYS MSE TYR PRO THR ALA ALA GLY ILE ALA TRP SER GLN SEQRES 3 C 140 ASP LYS ALA TYR TYR VAL ALA ASP PHE VAL MSE ASN GLY SEQRES 4 C 140 PHE ASP THR ARG VAL TRP PHE THR PRO ASP ALA GLU TRP SEQRES 5 C 140 VAL MSE LYS GLN THR ASP TRP GLU THR LEU ASP GLU VAL SEQRES 6 C 140 PRO ALA ALA VAL PHE ASN ALA PHE ALA ALA SER GLU PHE SEQRES 7 C 140 SER ASP GLY VAL VAL GLN ASN VAL THR TRP VAL GLN PHE SEQRES 8 C 140 PRO GLU TRP GLN PRO ILE VAL ALA ILE GLN VAL GLY LYS SEQRES 9 C 140 PRO ASN MSE GLN MSE LYS TYR GLN ILE LEU PHE THR PRO SEQRES 10 C 140 LYS GLY GLU VAL LEU ARG GLN GLN ASN ILE THR ASN ALA SEQRES 11 C 140 TYR ASN THR LEU GLY ALA SER THR PHE LEU SEQRES 1 D 140 GLY GLY TYR ALA PRO ASP SER VAL GLN ILE ALA LEU LYS SEQRES 2 D 140 LYS MSE TYR PRO THR ALA ALA GLY ILE ALA TRP SER GLN SEQRES 3 D 140 ASP LYS ALA TYR TYR VAL ALA ASP PHE VAL MSE ASN GLY SEQRES 4 D 140 PHE ASP THR ARG VAL TRP PHE THR PRO ASP ALA GLU TRP SEQRES 5 D 140 VAL MSE LYS GLN THR ASP TRP GLU THR LEU ASP GLU VAL SEQRES 6 D 140 PRO ALA ALA VAL PHE ASN ALA PHE ALA ALA SER GLU PHE SEQRES 7 D 140 SER ASP GLY VAL VAL GLN ASN VAL THR TRP VAL GLN PHE SEQRES 8 D 140 PRO GLU TRP GLN PRO ILE VAL ALA ILE GLN VAL GLY LYS SEQRES 9 D 140 PRO ASN MSE GLN MSE LYS TYR GLN ILE LEU PHE THR PRO SEQRES 10 D 140 LYS GLY GLU VAL LEU ARG GLN GLN ASN ILE THR ASN ALA SEQRES 11 D 140 TYR ASN THR LEU GLY ALA SER THR PHE LEU MODRES 4HBR MSE A 35 MET SELENOMETHIONINE MODRES 4HBR MSE A 57 MET SELENOMETHIONINE MODRES 4HBR MSE A 74 MET SELENOMETHIONINE MODRES 4HBR MSE A 127 MET SELENOMETHIONINE MODRES 4HBR MSE A 129 MET SELENOMETHIONINE MODRES 4HBR MSE B 35 MET SELENOMETHIONINE MODRES 4HBR MSE B 57 MET SELENOMETHIONINE MODRES 4HBR MSE B 74 MET SELENOMETHIONINE MODRES 4HBR MSE B 127 MET SELENOMETHIONINE MODRES 4HBR MSE B 129 MET SELENOMETHIONINE MODRES 4HBR MSE C 35 MET SELENOMETHIONINE MODRES 4HBR MSE C 57 MET SELENOMETHIONINE MODRES 4HBR MSE C 74 MET SELENOMETHIONINE MODRES 4HBR MSE C 127 MET SELENOMETHIONINE MODRES 4HBR MSE C 129 MET SELENOMETHIONINE MODRES 4HBR MSE D 35 MET SELENOMETHIONINE MODRES 4HBR MSE D 57 MET SELENOMETHIONINE MODRES 4HBR MSE D 74 MET SELENOMETHIONINE MODRES 4HBR MSE D 127 MET SELENOMETHIONINE MODRES 4HBR MSE D 129 MET SELENOMETHIONINE HET MSE A 35 8 HET MSE A 57 8 HET MSE A 74 8 HET MSE A 127 13 HET MSE A 129 8 HET MSE B 35 8 HET MSE B 57 8 HET MSE B 74 8 HET MSE B 127 5 HET MSE B 129 8 HET MSE C 35 8 HET MSE C 57 8 HET MSE C 74 8 HET MSE C 127 13 HET MSE C 129 8 HET MSE D 35 8 HET MSE D 57 8 HET MSE D 74 8 HET MSE D 127 13 HET MSE D 129 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 HOH *284(H2 O) HELIX 1 1 PRO A 25 TYR A 36 1 12 HELIX 2 2 THR A 81 VAL A 85 5 5 HELIX 3 3 PRO A 86 SER A 96 1 11 HELIX 4 4 GLY A 155 LEU A 160 1 6 HELIX 5 5 PRO B 25 TYR B 36 1 12 HELIX 6 6 THR B 81 VAL B 85 5 5 HELIX 7 7 PRO B 86 SER B 96 1 11 HELIX 8 8 GLY B 155 LEU B 160 1 6 HELIX 9 9 PRO C 25 TYR C 36 1 12 HELIX 10 10 THR C 81 VAL C 85 5 5 HELIX 11 11 PRO C 86 SER C 96 1 11 HELIX 12 12 GLY C 155 LEU C 160 1 6 HELIX 13 13 PRO D 25 TYR D 36 1 12 HELIX 14 14 THR D 81 VAL D 85 5 5 HELIX 15 15 PRO D 86 SER D 96 1 11 HELIX 16 16 GLY D 155 LEU D 160 1 6 SHEET 1 A 8 ALA A 43 ASP A 47 0 SHEET 2 A 8 TYR A 50 MSE A 57 -1 O VAL A 52 N SER A 45 SHEET 3 A 8 PHE A 60 PHE A 66 -1 O THR A 62 N PHE A 55 SHEET 4 A 8 TRP A 72 ASP A 78 -1 O ASP A 78 N ASP A 61 SHEET 5 A 8 VAL A 102 GLN A 110 -1 O GLN A 110 N LYS A 75 SHEET 6 A 8 ILE A 117 LYS A 124 -1 O GLN A 121 N GLN A 104 SHEET 7 A 8 MSE A 129 PHE A 135 -1 O MSE A 129 N LYS A 124 SHEET 8 A 8 VAL A 141 ASN A 146 -1 O GLN A 145 N GLN A 132 SHEET 1 B 8 ALA B 43 ASP B 47 0 SHEET 2 B 8 TYR B 50 MSE B 57 -1 O VAL B 52 N SER B 45 SHEET 3 B 8 PHE B 60 PHE B 66 -1 O THR B 62 N PHE B 55 SHEET 4 B 8 TRP B 72 ASP B 78 -1 O MSE B 74 N TRP B 65 SHEET 5 B 8 VAL B 102 GLN B 110 -1 O GLN B 110 N LYS B 75 SHEET 6 B 8 ILE B 117 LYS B 124 -1 O ILE B 117 N VAL B 109 SHEET 7 B 8 MSE B 129 PHE B 135 -1 O MSE B 129 N LYS B 124 SHEET 8 B 8 VAL B 141 ASN B 146 -1 O LEU B 142 N LEU B 134 SHEET 1 C 8 ALA C 43 ASP C 47 0 SHEET 2 C 8 TYR C 50 MSE C 57 -1 O VAL C 52 N SER C 45 SHEET 3 C 8 PHE C 60 PHE C 66 -1 O THR C 62 N PHE C 55 SHEET 4 C 8 TRP C 72 ASP C 78 -1 O ASP C 78 N ASP C 61 SHEET 5 C 8 VAL C 102 GLN C 110 -1 O GLN C 110 N LYS C 75 SHEET 6 C 8 ILE C 117 LYS C 124 -1 O GLN C 121 N GLN C 104 SHEET 7 C 8 MSE C 129 PHE C 135 -1 O MSE C 129 N LYS C 124 SHEET 8 C 8 VAL C 141 ASN C 146 -1 O LEU C 142 N LEU C 134 SHEET 1 D 8 ALA D 43 ASP D 47 0 SHEET 2 D 8 TYR D 50 MSE D 57 -1 O VAL D 52 N SER D 45 SHEET 3 D 8 PHE D 60 PHE D 66 -1 O THR D 62 N PHE D 55 SHEET 4 D 8 TRP D 72 ASP D 78 -1 O MSE D 74 N TRP D 65 SHEET 5 D 8 VAL D 102 GLN D 110 -1 O TRP D 108 N THR D 77 SHEET 6 D 8 ILE D 117 LYS D 124 -1 O GLN D 121 N GLN D 104 SHEET 7 D 8 MSE D 129 PHE D 135 -1 O MSE D 129 N LYS D 124 SHEET 8 D 8 VAL D 141 ASN D 146 -1 O LEU D 142 N LEU D 134 LINK C LYS A 34 N MSE A 35 1555 1555 1.35 LINK C MSE A 35 N TYR A 36 1555 1555 1.36 LINK C VAL A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N ASN A 58 1555 1555 1.33 LINK C VAL A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N LYS A 75 1555 1555 1.33 LINK C ASN A 126 N MSE A 127 1555 1555 1.35 LINK C MSE A 127 N GLN A 128 1555 1555 1.36 LINK C GLN A 128 N MSE A 129 1555 1555 1.35 LINK C MSE A 129 N LYS A 130 1555 1555 1.35 LINK C LYS B 34 N MSE B 35 1555 1555 1.35 LINK C MSE B 35 N TYR B 36 1555 1555 1.36 LINK C VAL B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N ASN B 58 1555 1555 1.36 LINK C VAL B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N LYS B 75 1555 1555 1.33 LINK C ASN B 126 N MSE B 127 1555 1555 1.35 LINK C MSE B 127 N GLN B 128 1555 1555 1.36 LINK C GLN B 128 N MSE B 129 1555 1555 1.35 LINK C MSE B 129 N LYS B 130 1555 1555 1.34 LINK C LYS C 34 N MSE C 35 1555 1555 1.34 LINK C MSE C 35 N TYR C 36 1555 1555 1.34 LINK C VAL C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N ASN C 58 1555 1555 1.33 LINK C VAL C 73 N MSE C 74 1555 1555 1.34 LINK C MSE C 74 N LYS C 75 1555 1555 1.33 LINK C ASN C 126 N MSE C 127 1555 1555 1.35 LINK C MSE C 127 N GLN C 128 1555 1555 1.37 LINK C GLN C 128 N MSE C 129 1555 1555 1.35 LINK C MSE C 129 N LYS C 130 1555 1555 1.35 LINK C LYS D 34 N MSE D 35 1555 1555 1.35 LINK C MSE D 35 N TYR D 36 1555 1555 1.35 LINK C VAL D 56 N MSE D 57 1555 1555 1.34 LINK C MSE D 57 N ASN D 58 1555 1555 1.35 LINK C VAL D 73 N MSE D 74 1555 1555 1.32 LINK C MSE D 74 N LYS D 75 1555 1555 1.35 LINK C ASN D 126 N MSE D 127 1555 1555 1.35 LINK C MSE D 127 N GLN D 128 1555 1555 1.38 LINK C GLN D 128 N MSE D 129 1555 1555 1.35 LINK C MSE D 129 N LYS D 130 1555 1555 1.34 CRYST1 117.638 117.638 150.125 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008501 0.004908 0.000000 0.00000 SCALE2 0.000000 0.009816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006661 0.00000 CONECT 95 102 CONECT 102 95 103 CONECT 103 102 104 106 CONECT 104 103 105 110 CONECT 105 104 CONECT 106 103 107 CONECT 107 106 108 CONECT 108 107 109 CONECT 109 108 CONECT 110 104 CONECT 271 276 CONECT 276 271 277 CONECT 277 276 278 280 CONECT 278 277 279 284 CONECT 279 278 CONECT 280 277 281 CONECT 281 280 282 CONECT 282 281 283 CONECT 283 282 CONECT 284 278 CONECT 417 422 CONECT 422 417 423 CONECT 423 422 424 426 CONECT 424 423 425 430 CONECT 425 424 CONECT 426 423 427 CONECT 427 426 428 CONECT 428 427 429 CONECT 429 428 CONECT 430 424 CONECT 836 842 CONECT 842 836 843 844 CONECT 843 842 845 847 CONECT 844 842 845 848 CONECT 845 843 844 846 855 CONECT 846 845 CONECT 847 843 849 CONECT 848 844 850 CONECT 849 847 851 CONECT 850 848 852 CONECT 851 849 853 CONECT 852 850 854 CONECT 853 851 CONECT 854 852 CONECT 855 845 CONECT 857 864 CONECT 864 857 865 CONECT 865 864 866 868 CONECT 866 865 867 872 CONECT 867 866 CONECT 868 865 869 CONECT 869 868 870 CONECT 870 869 871 CONECT 871 870 CONECT 872 866 CONECT 1217 1224 CONECT 1224 1217 1225 CONECT 1225 1224 1226 1228 CONECT 1226 1225 1227 1232 CONECT 1227 1226 CONECT 1228 1225 1229 CONECT 1229 1228 1230 CONECT 1230 1229 1231 CONECT 1231 1230 CONECT 1232 1226 CONECT 1393 1398 CONECT 1398 1393 1399 CONECT 1399 1398 1400 1402 CONECT 1400 1399 1401 1406 CONECT 1401 1400 CONECT 1402 1399 1403 CONECT 1403 1402 1404 CONECT 1404 1403 1405 CONECT 1405 1404 CONECT 1406 1400 CONECT 1550 1555 CONECT 1555 1550 1556 CONECT 1556 1555 1557 1559 CONECT 1557 1556 1558 1563 CONECT 1558 1557 CONECT 1559 1556 1560 CONECT 1560 1559 1561 CONECT 1561 1560 1562 CONECT 1562 1561 CONECT 1563 1557 CONECT 1973 1979 CONECT 1979 1973 1980 CONECT 1980 1979 1981 1983 CONECT 1981 1980 1982 1984 CONECT 1982 1981 CONECT 1983 1980 CONECT 1984 1981 CONECT 1986 1993 CONECT 1993 1986 1994 CONECT 1994 1993 1995 1997 CONECT 1995 1994 1996 2001 CONECT 1996 1995 CONECT 1997 1994 1998 CONECT 1998 1997 1999 CONECT 1999 1998 2000 CONECT 2000 1999 CONECT 2001 1995 CONECT 2346 2353 CONECT 2353 2346 2354 CONECT 2354 2353 2355 2357 CONECT 2355 2354 2356 2361 CONECT 2356 2355 CONECT 2357 2354 2358 CONECT 2358 2357 2359 CONECT 2359 2358 2360 CONECT 2360 2359 CONECT 2361 2355 CONECT 2522 2527 CONECT 2527 2522 2528 CONECT 2528 2527 2529 2531 CONECT 2529 2528 2530 2535 CONECT 2530 2529 CONECT 2531 2528 2532 CONECT 2532 2531 2533 CONECT 2533 2532 2534 CONECT 2534 2533 CONECT 2535 2529 CONECT 2668 2673 CONECT 2673 2668 2674 CONECT 2674 2673 2675 2677 CONECT 2675 2674 2676 2681 CONECT 2676 2675 CONECT 2677 2674 2678 CONECT 2678 2677 2679 CONECT 2679 2678 2680 CONECT 2680 2679 CONECT 2681 2675 CONECT 3098 3104 CONECT 3104 3098 3105 3106 CONECT 3105 3104 3107 3109 CONECT 3106 3104 3107 3110 CONECT 3107 3105 3106 3108 3117 CONECT 3108 3107 CONECT 3109 3105 3111 CONECT 3110 3106 3112 CONECT 3111 3109 3113 CONECT 3112 3110 3114 CONECT 3113 3111 3115 CONECT 3114 3112 3116 CONECT 3115 3113 CONECT 3116 3114 CONECT 3117 3107 CONECT 3119 3126 CONECT 3126 3119 3127 CONECT 3127 3126 3128 3130 CONECT 3128 3127 3129 3134 CONECT 3129 3128 CONECT 3130 3127 3131 CONECT 3131 3130 3132 CONECT 3132 3131 3133 CONECT 3133 3132 CONECT 3134 3128 CONECT 3495 3502 CONECT 3502 3495 3503 CONECT 3503 3502 3504 3506 CONECT 3504 3503 3505 3510 CONECT 3505 3504 CONECT 3506 3503 3507 CONECT 3507 3506 3508 CONECT 3508 3507 3509 CONECT 3509 3508 CONECT 3510 3504 CONECT 3671 3676 CONECT 3676 3671 3677 CONECT 3677 3676 3678 3680 CONECT 3678 3677 3679 3684 CONECT 3679 3678 CONECT 3680 3677 3681 CONECT 3681 3680 3682 CONECT 3682 3681 3683 CONECT 3683 3682 CONECT 3684 3678 CONECT 3817 3822 CONECT 3822 3817 3823 CONECT 3823 3822 3824 3826 CONECT 3824 3823 3825 3830 CONECT 3825 3824 CONECT 3826 3823 3827 CONECT 3827 3826 3828 CONECT 3828 3827 3829 CONECT 3829 3828 CONECT 3830 3824 CONECT 4236 4242 CONECT 4242 4236 4243 4244 CONECT 4243 4242 4245 4247 CONECT 4244 4242 4245 4248 CONECT 4245 4243 4244 4246 4255 CONECT 4246 4245 CONECT 4247 4243 4249 CONECT 4248 4244 4250 CONECT 4249 4247 4251 CONECT 4250 4248 4252 CONECT 4251 4249 4253 CONECT 4252 4250 4254 CONECT 4253 4251 CONECT 4254 4252 CONECT 4255 4245 CONECT 4257 4264 CONECT 4264 4257 4265 CONECT 4265 4264 4266 4268 CONECT 4266 4265 4267 4272 CONECT 4267 4266 CONECT 4268 4265 4269 CONECT 4269 4268 4270 CONECT 4270 4269 4271 CONECT 4271 4270 CONECT 4272 4266 MASTER 372 0 20 16 32 0 0 6 4741 4 212 44 END