HEADER ISOMERASE 29-SEP-12 4HCD TITLE CRYSTAL STRUCTURE OF D-GLUCARATE DEHYDRATASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPLEXED WITH MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOMERASE/LACTONIZING ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: ATU3453; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE FOLD, D-GLUCARATE DEHYDRATASE, D-GLUCARATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,A.SAKAI,C.MILLIKIN,J.A.GERLT,S.C.ALMO REVDAT 1 30-OCT-13 4HCD 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,A.SAKAI,C.MILLIKIN,J.A.GERLT, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF D-GLUCARATE DEHYDRATASE FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS COMPLEXED WITH MAGNESIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9159 - 4.5292 1.00 2815 137 0.1506 0.1918 REMARK 3 2 4.5292 - 3.5985 1.00 2677 143 0.1163 0.1274 REMARK 3 3 3.5985 - 3.1446 1.00 2665 134 0.1375 0.1540 REMARK 3 4 3.1446 - 2.8575 1.00 2624 150 0.1676 0.1922 REMARK 3 5 2.8575 - 2.6530 1.00 2607 150 0.1757 0.2201 REMARK 3 6 2.6530 - 2.4967 1.00 2608 146 0.1753 0.2115 REMARK 3 7 2.4967 - 2.3718 1.00 2604 131 0.1640 0.1775 REMARK 3 8 2.3718 - 2.2686 1.00 2600 144 0.1506 0.1559 REMARK 3 9 2.2686 - 2.1813 1.00 2613 135 0.1433 0.2035 REMARK 3 10 2.1813 - 2.1061 1.00 2594 131 0.1474 0.1974 REMARK 3 11 2.1061 - 2.0403 1.00 2604 137 0.1449 0.1900 REMARK 3 12 2.0403 - 1.9820 1.00 2582 130 0.1582 0.2112 REMARK 3 13 1.9820 - 1.9298 1.00 2589 140 0.1704 0.2180 REMARK 3 14 1.9298 - 1.8827 1.00 2585 129 0.1602 0.2141 REMARK 3 15 1.8827 - 1.8400 1.00 2602 131 0.1563 0.1880 REMARK 3 16 1.8400 - 1.8008 1.00 2570 129 0.1638 0.2066 REMARK 3 17 1.8008 - 1.7648 1.00 2582 143 0.1972 0.2589 REMARK 3 18 1.7648 - 1.7315 1.00 2561 145 0.1952 0.2422 REMARK 3 19 1.7315 - 1.7000 0.98 2518 140 0.1899 0.2155 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3189 REMARK 3 ANGLE : 1.100 4336 REMARK 3 CHIRALITY : 0.072 456 REMARK 3 PLANARITY : 0.005 571 REMARK 3 DIHEDRAL : 12.224 1172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 24.913 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0M SODIUM CHLORIDE, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.59950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.59950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.59950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.59950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 133.19900 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 95290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 133.19900 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 133.19900 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 133.19900 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 133.19900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 531 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 65 -59.88 -122.64 REMARK 500 PHE A 208 123.41 -33.36 REMARK 500 LYS A 263 -136.20 54.23 REMARK 500 THR A 312 162.11 78.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 232 OE2 REMARK 620 2 GLU A 258 OE1 84.5 REMARK 620 3 ASP A 206 OD1 89.4 173.6 REMARK 620 4 HOH A 966 O 98.0 93.6 84.9 REMARK 620 5 HOH A 964 O 90.2 98.9 83.4 165.6 REMARK 620 6 HOH A 963 O 169.3 89.2 97.1 90.9 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 250 O REMARK 620 2 SER A 247 O 98.8 REMARK 620 3 HOH A 972 O 89.7 86.5 REMARK 620 4 HOH A 514 O 94.7 95.3 174.9 REMARK 620 5 HOH A 786 O 169.6 90.4 86.1 89.1 REMARK 620 6 HOH A 721 O 94.0 167.2 92.8 84.4 76.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 346 O REMARK 620 2 HOH A 994 O 96.1 REMARK 620 3 HIS A 343 O 85.9 124.2 REMARK 620 4 HOH A 752 O 170.3 84.3 85.9 REMARK 620 5 HOH A 973 O 93.5 118.0 117.6 94.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 773 O REMARK 620 2 HOH A 724 O 175.4 REMARK 620 3 HOH A 551 O 88.5 86.9 REMARK 620 4 GLY A 274 O 90.1 94.5 175.8 REMARK 620 5 SER A 247 OG 76.7 103.6 99.5 84.0 REMARK 620 6 HOH A 722 O 89.9 90.1 83.9 92.1 166.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 206 OD2 REMARK 620 2 ALA A 207 O 113.7 REMARK 620 3 GLU A 233 O 139.9 103.7 REMARK 620 4 GLU A 232 O 75.3 118.1 74.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RVK RELATED DB: PDB REMARK 900 RELATED ID: 4HCH RELATED DB: PDB REMARK 900 RELATED ID: 4HCL RELATED DB: PDB REMARK 900 RELATED ID: 4HCM RELATED DB: PDB DBREF 4HCD A 2 382 UNP Q7CSI0 Q7CSI0_AGRT5 2 382 SEQADV 4HCD MSE A -19 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD GLY A -18 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD SER A -17 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD SER A -16 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A -15 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A -14 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A -13 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A -12 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A -11 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A -10 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD SER A -9 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD SER A -8 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD GLY A -7 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD LEU A -6 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD VAL A -5 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD PRO A -4 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD ARG A -3 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD GLY A -2 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD SER A -1 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD HIS A 0 UNP Q7CSI0 EXPRESSION TAG SEQADV 4HCD MSE A 1 UNP Q7CSI0 EXPRESSION TAG SEQRES 1 A 402 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 402 LEU VAL PRO ARG GLY SER HIS MSE ILE ILE THR ASP VAL SEQRES 3 A 402 GLU VAL ARG VAL PHE ARG THR THR THR ARG ARG HIS SER SEQRES 4 A 402 ASP SER ALA GLY HIS ALA HIS PRO GLY PRO ALA HIS GLN SEQRES 5 A 402 VAL GLU GLN ALA MSE LEU THR VAL ARG THR GLU ASP GLY SEQRES 6 A 402 GLN GLU GLY HIS SER PHE THR ALA PRO GLU ILE VAL ARG SEQRES 7 A 402 PRO HIS VAL ILE GLU LYS PHE VAL LYS LYS VAL LEU ILE SEQRES 8 A 402 GLY GLU ASP HIS ARG ASP ARG GLU ARG LEU TRP GLN ASP SEQRES 9 A 402 LEU ALA HIS TRP GLN ARG GLY SER ALA ALA GLN LEU THR SEQRES 10 A 402 ASP ARG THR LEU ALA VAL VAL ASP CYS ALA LEU TRP ASP SEQRES 11 A 402 LEU ALA GLY ARG SER LEU GLY GLN PRO VAL TYR LYS LEU SEQRES 12 A 402 ILE GLY GLY TYR ARG ASP LYS VAL LEU ALA TYR GLY SER SEQRES 13 A 402 ILE MSE CYS GLY ASP GLU LEU GLU GLY GLY LEU ALA THR SEQRES 14 A 402 PRO GLU ASP TYR GLY ARG PHE ALA GLU THR LEU VAL LYS SEQRES 15 A 402 ARG GLY TYR LYS GLY ILE LYS LEU HIS THR TRP MSE PRO SEQRES 16 A 402 PRO VAL SER TRP ALA PRO ASP VAL LYS MSE ASP LEU LYS SEQRES 17 A 402 ALA CYS ALA ALA VAL ARG GLU ALA VAL GLY PRO ASP ILE SEQRES 18 A 402 ARG LEU MSE ILE ASP ALA PHE HIS TRP TYR SER ARG THR SEQRES 19 A 402 ASP ALA LEU ALA LEU GLY ARG GLY LEU GLU LYS LEU GLY SEQRES 20 A 402 PHE ASP TRP ILE GLU GLU PRO MSE ASP GLU GLN SER LEU SEQRES 21 A 402 SER SER TYR LYS TRP LEU SER ASP ASN LEU ASP ILE PRO SEQRES 22 A 402 VAL VAL GLY PRO GLU SER ALA ALA GLY LYS HIS TRP HIS SEQRES 23 A 402 ARG ALA GLU TRP ILE LYS ALA GLY ALA CYS ASP ILE LEU SEQRES 24 A 402 ARG THR GLY VAL ASN ASP VAL GLY GLY ILE THR PRO ALA SEQRES 25 A 402 LEU LYS THR MSE HIS LEU ALA GLU ALA PHE GLY MSE GLU SEQRES 26 A 402 CYS GLU VAL HIS GLY ASN THR ALA MSE ASN LEU HIS VAL SEQRES 27 A 402 VAL ALA ALA THR LYS ASN CYS ARG TRP TYR GLU ARG GLY SEQRES 28 A 402 LEU LEU HIS PRO PHE LEU GLU TYR ASP ASP GLY HIS ASP SEQRES 29 A 402 TYR LEU LYS SER LEU SER ASP PRO MSE ASP ARG ASP GLY SEQRES 30 A 402 PHE VAL HIS VAL PRO ASP ARG PRO GLY LEU GLY GLU ASP SEQRES 31 A 402 ILE ASP PHE THR PHE ILE ASP ASN ASN ARG VAL ARG MODRES 4HCD MSE A 1 MET SELENOMETHIONINE MODRES 4HCD MSE A 37 MET SELENOMETHIONINE MODRES 4HCD MSE A 138 MET SELENOMETHIONINE MODRES 4HCD MSE A 174 MET SELENOMETHIONINE MODRES 4HCD MSE A 185 MET SELENOMETHIONINE MODRES 4HCD MSE A 204 MET SELENOMETHIONINE MODRES 4HCD MSE A 235 MET SELENOMETHIONINE MODRES 4HCD MSE A 296 MET SELENOMETHIONINE MODRES 4HCD MSE A 304 MET SELENOMETHIONINE MODRES 4HCD MSE A 314 MET SELENOMETHIONINE MODRES 4HCD MSE A 353 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 37 8 HET MSE A 138 8 HET MSE A 174 8 HET MSE A 185 8 HET MSE A 204 16 HET MSE A 235 8 HET MSE A 296 8 HET MSE A 304 8 HET MSE A 314 8 HET MSE A 353 8 HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET MG A 405 1 HET MG A 406 1 HET MG A 407 1 HET NA A 408 1 HET NA A 409 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 CL 4(CL 1-) FORMUL 6 MG 3(MG 2+) FORMUL 9 NA 2(NA 1+) FORMUL 11 HOH *537(H2 O) HELIX 1 1 ALA A 53 VAL A 57 5 5 HELIX 2 2 ARG A 58 PHE A 65 1 8 HELIX 3 3 PHE A 65 ILE A 71 1 7 HELIX 4 4 ASP A 77 ARG A 90 1 14 HELIX 5 5 THR A 97 GLY A 117 1 21 HELIX 6 6 PRO A 119 GLY A 125 1 7 HELIX 7 7 THR A 149 GLY A 164 1 16 HELIX 8 8 ASP A 182 GLY A 198 1 17 HELIX 9 9 SER A 212 LYS A 225 1 14 HELIX 10 10 SER A 239 LEU A 250 1 12 HELIX 11 11 GLY A 262 ALA A 273 1 12 HELIX 12 12 GLY A 282 GLY A 287 1 6 HELIX 13 13 GLY A 288 PHE A 302 1 15 HELIX 14 14 THR A 312 THR A 322 1 11 HELIX 15 15 GLU A 338 GLY A 342 5 5 HELIX 16 16 ASP A 372 ASN A 379 1 8 SHEET 1 A 3 ILE A 3 SER A 19 0 SHEET 2 A 3 ALA A 25 THR A 42 -1 O GLN A 35 N PHE A 11 SHEET 3 A 3 GLU A 47 THR A 52 -1 O SER A 50 N LEU A 38 SHEET 1 B 8 CYS A 306 VAL A 308 0 SHEET 2 B 8 ILE A 278 THR A 281 1 N LEU A 279 O GLU A 307 SHEET 3 B 8 VAL A 254 GLY A 256 1 N GLY A 256 O ILE A 278 SHEET 4 B 8 TRP A 230 GLU A 232 1 N ILE A 231 O VAL A 255 SHEET 5 B 8 ARG A 202 ASP A 206 1 N ILE A 205 O GLU A 232 SHEET 6 B 8 GLY A 167 HIS A 171 1 N LEU A 170 O ASP A 206 SHEET 7 B 8 LYS A 130 ILE A 137 1 N ILE A 137 O LYS A 169 SHEET 8 B 8 TYR A 328 LEU A 333 1 O LEU A 333 N SER A 136 SHEET 1 C 8 CYS A 306 VAL A 308 0 SHEET 2 C 8 ILE A 278 THR A 281 1 N LEU A 279 O GLU A 307 SHEET 3 C 8 VAL A 254 GLY A 256 1 N GLY A 256 O ILE A 278 SHEET 4 C 8 TRP A 230 GLU A 232 1 N ILE A 231 O VAL A 255 SHEET 5 C 8 ARG A 202 ASP A 206 1 N ILE A 205 O GLU A 232 SHEET 6 C 8 GLY A 167 HIS A 171 1 N LEU A 170 O ASP A 206 SHEET 7 C 8 LYS A 130 ILE A 137 1 N ILE A 137 O LYS A 169 SHEET 8 C 8 PHE A 358 HIS A 360 -1 O VAL A 359 N VAL A 131 LINK C HIS A 0 N AMSE A 1 1555 1555 1.33 LINK C HIS A 0 N BMSE A 1 1555 1555 1.33 LINK C AMSE A 1 N ILE A 2 1555 1555 1.33 LINK C BMSE A 1 N ILE A 2 1555 1555 1.33 LINK C ALA A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N LEU A 38 1555 1555 1.33 LINK C ILE A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N CYS A 139 1555 1555 1.33 LINK C TRP A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N PRO A 175 1555 1555 1.35 LINK C LYS A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N ASP A 186 1555 1555 1.33 LINK C LEU A 203 N AMSE A 204 1555 1555 1.34 LINK C LEU A 203 N BMSE A 204 1555 1555 1.33 LINK C AMSE A 204 N ILE A 205 1555 1555 1.34 LINK C BMSE A 204 N ILE A 205 1555 1555 1.33 LINK C PRO A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N ASP A 236 1555 1555 1.33 LINK C THR A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N HIS A 297 1555 1555 1.33 LINK C GLY A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N GLU A 305 1555 1555 1.33 LINK C ALA A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N ASN A 315 1555 1555 1.33 LINK C PRO A 352 N MSE A 353 1555 1555 1.32 LINK C MSE A 353 N ASP A 354 1555 1555 1.33 LINK OE2 GLU A 232 MG MG A 405 1555 1555 1.99 LINK OE1 GLU A 258 MG MG A 405 1555 1555 2.00 LINK OD1 ASP A 206 MG MG A 405 1555 1555 2.01 LINK MG MG A 405 O HOH A 966 1555 1555 2.02 LINK O LEU A 250 MG MG A 406 1555 1555 2.07 LINK O LEU A 346 MG MG A 407 1555 1555 2.09 LINK MG MG A 405 O HOH A 964 1555 1555 2.15 LINK MG MG A 407 O HOH A 994 1555 1555 2.16 LINK O BSER A 247 MG MG A 406 1555 1555 2.16 LINK NA NA A 408 O HOH A 773 1555 1555 2.16 LINK O ASER A 247 MG MG A 406 1555 1555 2.16 LINK MG MG A 405 O HOH A 963 1555 1555 2.17 LINK MG MG A 406 O HOH A 972 1555 1555 2.21 LINK OD2 ASP A 206 NA NA A 409 1555 1555 2.23 LINK O ALA A 207 NA NA A 409 1555 1555 2.24 LINK O HIS A 343 MG MG A 407 1555 1555 2.27 LINK MG MG A 406 O HOH A 514 1555 1555 2.28 LINK MG MG A 406 O HOH A 786 1555 1555 2.29 LINK MG MG A 406 O HOH A 721 1555 1555 2.30 LINK O GLU A 233 NA NA A 409 1555 1555 2.30 LINK NA NA A 408 O HOH A 724 1555 1555 2.33 LINK NA NA A 408 O HOH A 551 1555 1555 2.34 LINK O GLY A 274 NA NA A 408 1555 1555 2.40 LINK MG MG A 407 O HOH A 752 1555 1555 2.47 LINK OG BSER A 247 NA NA A 408 1555 1555 2.48 LINK NA NA A 408 O HOH A 722 1555 1555 2.56 LINK MG MG A 407 O HOH A 973 1555 1555 2.73 LINK O GLU A 232 NA NA A 409 1555 1555 2.85 CISPEP 1 PRO A 175 PRO A 176 0 8.31 CISPEP 2 ALA A 180 PRO A 181 0 -3.45 CISPEP 3 GLY A 256 PRO A 257 0 -1.88 CISPEP 4 GLY A 331 LEU A 332 0 9.88 SITE 1 AC1 4 ARG A 163 ARG A 330 LEU A 349 MSE A 353 SITE 1 AC2 3 LYS A 347 PHE A 373 THR A 374 SITE 1 AC3 3 PRO A 59 HIS A 60 HOH A 882 SITE 1 AC4 2 HOH A 516 HOH A 591 SITE 1 AC5 6 ASP A 206 GLU A 232 GLU A 258 HOH A 963 SITE 2 AC5 6 HOH A 964 HOH A 966 SITE 1 AC6 6 SER A 247 LEU A 250 HOH A 514 HOH A 721 SITE 2 AC6 6 HOH A 786 HOH A 972 SITE 1 AC7 5 HIS A 343 LEU A 346 HOH A 752 HOH A 973 SITE 2 AC7 5 HOH A 994 SITE 1 AC8 7 SER A 247 ASP A 248 GLY A 274 HOH A 551 SITE 2 AC8 7 HOH A 722 HOH A 724 HOH A 773 SITE 1 AC9 5 ASP A 206 ALA A 207 HIS A 209 GLU A 232 SITE 2 AC9 5 GLU A 233 CRYST1 118.733 118.733 133.199 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007508 0.00000