HEADER IMMUNE SYSTEM 02-OCT-12 4HD9 TITLE CRYSTAL STRUCTURE OF NATIVE HUMAN MADCAM-1 D1D2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCOSAL ADDRESSIN CELL ADHESION MOLECULE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MADCAM-1, HMADCAM-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MADCAM1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: LEC3.2.8.1; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: OVARY KEYWDS IMMUNOGLOBULIN SUPERFAMILY, ROLLING AND FIRM ADHESION, INTEGRIN KEYWDS 2 ALPHA4BETA7, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.SPRINGER,Y.YU,J.ZHU REVDAT 3 30-OCT-24 4HD9 1 HETSYN REVDAT 2 29-JUL-20 4HD9 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 23-JAN-13 4HD9 0 JRNL AUTH T.SPRINGER,Y.YU,J.ZHU,J.-H.WANG,P.-S.HUANG JRNL TITL A DIFFERENT FOLD WITH AN INTEGRIN-BINDING LOOP SPECIALIZED JRNL TITL 2 FOR FLEXIBILITY IN MUCOSAL ADDRESSIN CELL ADHESION JRNL TITL 3 MOLECULE-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 22754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5615 - 4.2749 0.96 1441 165 0.1783 0.2037 REMARK 3 2 4.2749 - 3.3969 0.98 1425 143 0.1544 0.1944 REMARK 3 3 3.3969 - 2.9686 0.98 1413 144 0.1632 0.2207 REMARK 3 4 2.9686 - 2.6976 0.99 1410 151 0.1594 0.2269 REMARK 3 5 2.6976 - 2.5046 0.99 1416 160 0.1709 0.2253 REMARK 3 6 2.5046 - 2.3571 0.99 1389 162 0.1727 0.2344 REMARK 3 7 2.3571 - 2.2391 1.00 1428 142 0.1625 0.2029 REMARK 3 8 2.2391 - 2.1417 0.99 1379 172 0.1567 0.1872 REMARK 3 9 2.1417 - 2.0593 1.00 1382 153 0.1588 0.2018 REMARK 3 10 2.0593 - 1.9883 0.99 1382 148 0.1771 0.2273 REMARK 3 11 1.9883 - 1.9262 0.99 1393 163 0.1782 0.2048 REMARK 3 12 1.9262 - 1.8712 0.96 1353 118 0.1974 0.2150 REMARK 3 13 1.8712 - 1.8219 0.93 1300 164 0.2237 0.2641 REMARK 3 14 1.8219 - 1.7775 0.80 1134 111 0.2378 0.2384 REMARK 3 15 1.7775 - 1.7371 0.57 787 85 0.2568 0.3667 REMARK 3 16 1.7371 - 1.7000 0.36 490 51 0.2357 0.2885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1692 REMARK 3 ANGLE : 1.341 2335 REMARK 3 CHIRALITY : 0.072 277 REMARK 3 PLANARITY : 0.007 315 REMARK 3 DIHEDRAL : 14.350 648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:20) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7540 64.9727 31.5211 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.2362 REMARK 3 T33: 0.1534 T12: -0.0523 REMARK 3 T13: -0.0173 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 7.5499 L22: 2.3823 REMARK 3 L33: 6.1738 L12: -1.9417 REMARK 3 L13: 4.2119 L23: -1.8114 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: 0.4824 S13: 0.2820 REMARK 3 S21: 0.0725 S22: -0.1205 S23: -0.3967 REMARK 3 S31: -0.3896 S32: 1.0310 S33: 0.1681 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 21:59) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3419 54.3180 37.8851 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1775 REMARK 3 T33: 0.1137 T12: -0.0042 REMARK 3 T13: -0.0144 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 5.4713 L22: 7.3440 REMARK 3 L33: 5.7867 L12: -0.8653 REMARK 3 L13: 0.6907 L23: 0.4575 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.1102 S13: -0.1591 REMARK 3 S21: 0.3286 S22: -0.0435 S23: 0.0281 REMARK 3 S31: 0.1113 S32: 0.4314 S33: 0.0638 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 60:86) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9051 58.4656 37.1132 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.1149 REMARK 3 T33: 0.1361 T12: -0.0458 REMARK 3 T13: -0.0193 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 5.7936 L22: 2.7987 REMARK 3 L33: 6.4959 L12: -0.3693 REMARK 3 L13: 5.0566 L23: -0.2008 REMARK 3 S TENSOR REMARK 3 S11: 0.2335 S12: 0.0358 S13: -0.3225 REMARK 3 S21: -0.1408 S22: 0.0267 S23: 0.0514 REMARK 3 S31: 0.2559 S32: 0.2016 S33: -0.2551 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 87:107) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5943 69.2982 19.0947 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.1089 REMARK 3 T33: 0.1591 T12: -0.0029 REMARK 3 T13: -0.0163 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 5.1885 L22: 0.3203 REMARK 3 L33: 4.3620 L12: -0.8446 REMARK 3 L13: 2.4305 L23: -0.8099 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.1243 S13: 0.0893 REMARK 3 S21: 0.0714 S22: -0.0872 S23: 0.0390 REMARK 3 S31: -0.0859 S32: -0.3672 S33: 0.0194 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 108:143) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5246 75.9852 23.6972 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1242 REMARK 3 T33: 0.0916 T12: -0.0018 REMARK 3 T13: 0.0272 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.6877 L22: 3.9277 REMARK 3 L33: 1.9271 L12: -1.9539 REMARK 3 L13: 0.7282 L23: -0.6264 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.1241 S13: -0.0409 REMARK 3 S21: 0.2080 S22: -0.0131 S23: 0.1375 REMARK 3 S31: -0.1819 S32: -0.1926 S33: 0.0614 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 144:172) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7166 67.5962 25.1133 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1743 REMARK 3 T33: 0.1730 T12: -0.0522 REMARK 3 T13: 0.0448 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 7.5341 L22: 3.0616 REMARK 3 L33: 4.6085 L12: -4.5095 REMARK 3 L13: 2.6752 L23: -2.9110 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: -0.4424 S13: -0.7398 REMARK 3 S21: 0.0201 S22: 0.3421 S23: 0.5991 REMARK 3 S31: 0.3585 S32: -0.4072 S33: -0.1328 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 173:203) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4961 77.4720 16.4713 REMARK 3 T TENSOR REMARK 3 T11: 0.1631 T22: 0.1104 REMARK 3 T33: 0.1169 T12: 0.0407 REMARK 3 T13: 0.0055 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 5.1489 L22: 2.6424 REMARK 3 L33: 4.5480 L12: -2.1577 REMARK 3 L13: 2.2202 L23: -1.7409 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.2093 S13: 0.2013 REMARK 3 S21: -0.0626 S22: 0.0121 S23: 0.0886 REMARK 3 S31: -0.4905 S32: -0.3316 S33: 0.0522 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23698 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 22.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4K, 0.5M LI2SO4, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.83400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.83400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.23800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.99400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.23800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.99400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.83400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.23800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.99400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.83400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.23800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.99400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 599 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 645 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 152 REMARK 465 PRO A 153 REMARK 465 GLN A 154 REMARK 465 GLY A 155 REMARK 465 ASP A 156 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 157 N CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 630 O HOH A 631 1.63 REMARK 500 OE2 GLU A 7 O HOH A 604 1.83 REMARK 500 O HOH A 606 O HOH A 619 1.92 REMARK 500 O HOH A 549 O HOH A 631 1.98 REMARK 500 O HOH A 603 O HOH A 620 1.99 REMARK 500 NH1 ARG A 54 O HOH A 640 2.01 REMARK 500 O HOH A 634 O HOH A 635 2.01 REMARK 500 O GLY A 40 O HOH A 644 2.08 REMARK 500 O HOH A 526 O HOH A 589 2.10 REMARK 500 O HOH A 580 O HOH A 608 2.14 REMARK 500 O HOH A 627 O HOH A 630 2.16 REMARK 500 O HOH A 625 O HOH A 626 2.17 REMARK 500 O HOH A 516 O HOH A 579 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 419 O HOH A 632 3655 1.39 REMARK 500 O HOH A 512 O HOH A 628 3655 1.43 REMARK 500 O HOH A 517 O HOH A 624 3655 1.50 REMARK 500 O HOH A 402 O HOH A 633 3655 1.55 REMARK 500 O HOH A 434 O HOH A 627 3655 1.62 REMARK 500 O HOH A 515 O HOH A 631 3655 1.65 REMARK 500 O HOH A 552 O HOH A 629 3655 1.68 REMARK 500 O HOH A 549 O HOH A 630 3655 1.72 REMARK 500 O HOH A 513 O HOH A 625 3655 1.74 REMARK 500 O HOH A 605 O HOH A 626 3655 1.75 REMARK 500 O HOH A 626 O HOH A 632 3655 1.82 REMARK 500 O HOH A 600 O HOH A 622 8466 1.86 REMARK 500 O HOH A 598 O HOH A 598 3655 1.94 REMARK 500 OD2 ASP A 51 O HOH A 642 4566 2.17 REMARK 500 O HOH A 552 O HOH A 630 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 57.60 -119.97 REMARK 500 SER A 44 -110.93 -135.19 REMARK 500 SER A 44 22.46 -179.19 REMARK 500 LEU A 45 -64.19 -145.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HBQ RELATED DB: PDB REMARK 900 RELATED ID: 4HCR RELATED DB: PDB DBREF 4HD9 A 1 203 UNP Q13477 MADCA_HUMAN 23 225 SEQADV 4HD9 ASN A 94 UNP Q13477 ASP 116 ENGINEERED MUTATION SEQADV 4HD9 HIS A 204 UNP Q13477 EXPRESSION TAG SEQADV 4HD9 HIS A 205 UNP Q13477 EXPRESSION TAG SEQADV 4HD9 HIS A 206 UNP Q13477 EXPRESSION TAG SEQADV 4HD9 HIS A 207 UNP Q13477 EXPRESSION TAG SEQADV 4HD9 HIS A 208 UNP Q13477 EXPRESSION TAG SEQADV 4HD9 HIS A 209 UNP Q13477 EXPRESSION TAG SEQRES 1 A 209 VAL LYS PRO LEU GLN VAL GLU PRO PRO GLU PRO VAL VAL SEQRES 2 A 209 ALA VAL ALA LEU GLY ALA SER ARG GLN LEU THR CYS ARG SEQRES 3 A 209 LEU ALA CYS ALA ASP ARG GLY ALA SER VAL GLN TRP ARG SEQRES 4 A 209 GLY LEU ASP THR SER LEU GLY ALA VAL GLN SER ASP THR SEQRES 5 A 209 GLY ARG SER VAL LEU THR VAL ARG ASN ALA SER LEU SER SEQRES 6 A 209 ALA ALA GLY THR ARG VAL CYS VAL GLY SER CYS GLY GLY SEQRES 7 A 209 ARG THR PHE GLN HIS THR VAL GLN LEU LEU VAL TYR ALA SEQRES 8 A 209 PHE PRO ASN GLN LEU THR VAL SER PRO ALA ALA LEU VAL SEQRES 9 A 209 PRO GLY ASP PRO GLU VAL ALA CYS THR ALA HIS LYS VAL SEQRES 10 A 209 THR PRO VAL ASP PRO ASN ALA LEU SER PHE SER LEU LEU SEQRES 11 A 209 VAL GLY GLY GLN GLU LEU GLU GLY ALA GLN ALA LEU GLY SEQRES 12 A 209 PRO GLU VAL GLN GLU GLU GLU GLU GLU PRO GLN GLY ASP SEQRES 13 A 209 GLU ASP VAL LEU PHE ARG VAL THR GLU ARG TRP ARG LEU SEQRES 14 A 209 PRO PRO LEU GLY THR PRO VAL PRO PRO ALA LEU TYR CYS SEQRES 15 A 209 GLN ALA THR MET ARG LEU PRO GLY LEU GLU LEU SER HIS SEQRES 16 A 209 ARG GLN ALA ILE PRO VAL LEU HIS HIS HIS HIS HIS HIS SEQRES 17 A 209 HIS MODRES 4HD9 ASN A 61 ASN GLYCOSYLATION SITE HET NAG A2061 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *247(H2 O) HELIX 1 1 SER A 63 ALA A 67 5 5 SHEET 1 A 3 LEU A 4 GLU A 7 0 SHEET 2 A 3 ARG A 21 LEU A 27 -1 O ARG A 26 N GLN A 5 SHEET 3 A 3 ARG A 54 VAL A 59 -1 O LEU A 57 N LEU A 23 SHEET 1 B 5 VAL A 12 ALA A 16 0 SHEET 2 B 5 ARG A 79 TYR A 90 1 O LEU A 88 N VAL A 15 SHEET 3 B 5 GLY A 68 CYS A 76 -1 N ARG A 70 O VAL A 85 SHEET 4 B 5 SER A 35 ARG A 39 -1 N GLN A 37 O VAL A 73 SHEET 5 B 5 VAL A 48 ASP A 51 -1 O VAL A 48 N TRP A 38 SHEET 1 C 4 GLN A 95 SER A 99 0 SHEET 2 C 4 GLU A 109 VAL A 117 -1 O THR A 113 N THR A 97 SHEET 3 C 4 PHE A 161 ARG A 168 -1 O VAL A 163 N ALA A 114 SHEET 4 C 4 GLN A 140 ALA A 141 -1 N GLN A 140 O ARG A 168 SHEET 1 D 4 GLN A 95 SER A 99 0 SHEET 2 D 4 GLU A 109 VAL A 117 -1 O THR A 113 N THR A 97 SHEET 3 D 4 PHE A 161 ARG A 168 -1 O VAL A 163 N ALA A 114 SHEET 4 D 4 GLU A 145 GLU A 148 -1 N GLN A 147 O ARG A 162 SHEET 1 E 4 GLN A 134 GLU A 135 0 SHEET 2 E 4 LEU A 125 VAL A 131 -1 N VAL A 131 O GLN A 134 SHEET 3 E 4 ALA A 179 LEU A 188 -1 O THR A 185 N SER A 126 SHEET 4 E 4 LEU A 191 PRO A 200 -1 O ILE A 199 N LEU A 180 SSBOND 1 CYS A 25 CYS A 72 1555 1555 2.03 SSBOND 2 CYS A 29 CYS A 76 1555 1555 2.04 SSBOND 3 CYS A 112 CYS A 182 1555 1555 2.06 LINK ND2AASN A 61 C1 ANAG A2061 1555 1555 1.45 CISPEP 1 GLU A 7 PRO A 8 0 -4.99 CISPEP 2 GLU A 7 PRO A 8 0 2.55 CISPEP 3 SER A 99 PRO A 100 0 -4.06 CISPEP 4 THR A 118 PRO A 119 0 -2.11 CISPEP 5 THR A 174 PRO A 175 0 3.46 CRYST1 64.476 99.988 69.668 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014354 0.00000