HEADER TRANSFERASE/SUBSTRATE 02-OCT-12 4HDS TITLE CRYSTAL STRUCTURE OF ARSAB IN COMPLEX WITH PHENOL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARSA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.21; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ARSB; COMPND 8 CHAIN: B; COMPND 9 EC: 2.4.2.21; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROMUSA OVATA; SOURCE 3 ORGANISM_TAXID: 2378; SOURCE 4 GENE: ARSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JE13607; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PARSAB22; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SPOROMUSA OVATA; SOURCE 12 ORGANISM_TAXID: 2378; SOURCE 13 GENE: ARSB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: JE13607; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PARSAB22 KEYWDS TRANSFERASE, TRANSFERASE-SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.NEWMISTER,C.H.CHAN,J.C.ESCALANTE-SEMERENA,I.RAYMENT REVDAT 3 28-FEB-24 4HDS 1 REMARK SEQADV REVDAT 2 30-JAN-13 4HDS 1 JRNL REVDAT 1 24-OCT-12 4HDS 0 JRNL AUTH S.A.NEWMISTER,C.H.CHAN,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION OF THE NICOTINATE JRNL TITL 2 MONONUCLEOTIDE:PHENOL/P-CRESOL PHOSPHORIBOSYLTRANSFERASE JRNL TITL 3 (ARSAB) ENZYME FROM SPOROMUSA OVATA. JRNL REF BIOCHEMISTRY V. 51 8571 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23039029 JRNL DOI 10.1021/BI301142H REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.725 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.259 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;36.713 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;17.883 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;21.018 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4HDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI-FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 75.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : 0.52800 REMARK 200 FOR SHELL : 8.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% MEPEG5K, 100 MM MOPS PH 7.1 , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.27350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.76100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.76100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.27350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 205 REMARK 465 GLY A 206 REMARK 465 ILE A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ARG A 340 REMARK 465 GLY A 341 REMARK 465 GLY A 342 REMARK 465 LYS A 343 REMARK 465 ALA A 344 REMARK 465 ASN A 345 REMARK 465 ALA A 346 REMARK 465 MET B 1 REMARK 465 MET B 71 REMARK 465 ALA B 72 REMARK 465 THR B 73 REMARK 465 ASP B 74 REMARK 465 GLN B 75 REMARK 465 GLN B 76 REMARK 465 VAL B 334 REMARK 465 ALA B 335 REMARK 465 GLN B 336 REMARK 465 ASP B 337 REMARK 465 GLY B 338 REMARK 465 PRO B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 LEU B 342 REMARK 465 ARG B 343 REMARK 465 GLN B 344 REMARK 465 SER B 345 REMARK 465 LYS B 346 REMARK 465 ASP B 347 REMARK 465 VAL B 348 REMARK 465 ARG B 349 REMARK 465 ASP B 350 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 200 CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 191 O HOH B 1038 1.93 REMARK 500 OE2 GLU B 136 O HOH B 1029 2.03 REMARK 500 NE2 GLN A 21 O HOH A 904 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 69 NE2 HIS A 69 CD2 -0.070 REMARK 500 HIS A 86 NE2 HIS A 86 CD2 -0.079 REMARK 500 HIS A 167 NE2 HIS A 167 CD2 -0.075 REMARK 500 GLU A 176 CD GLU A 176 OE1 -0.071 REMARK 500 GLU A 176 CD GLU A 176 OE2 -0.076 REMARK 500 VAL A 200 N VAL A 200 CA -0.259 REMARK 500 VAL A 200 N VAL A 200 CA -0.261 REMARK 500 HIS A 291 NE2 HIS A 291 CD2 -0.081 REMARK 500 HIS A 298 NE2 HIS A 298 CD2 -0.072 REMARK 500 GLU A 319 CD GLU A 319 OE1 -0.078 REMARK 500 SER A 324 CB SER A 324 OG -0.081 REMARK 500 HIS B 35 NE2 HIS B 35 CD2 -0.079 REMARK 500 SER B 36 CB SER B 36 OG -0.090 REMARK 500 GLU B 38 CD GLU B 38 OE1 -0.089 REMARK 500 GLU B 38 CD GLU B 38 OE2 -0.075 REMARK 500 HIS B 39 NE2 HIS B 39 CD2 -0.093 REMARK 500 HIS B 100 NE2 HIS B 100 CD2 -0.087 REMARK 500 ARG B 104 N ARG B 104 CA -0.132 REMARK 500 ARG B 104 N ARG B 104 CA -0.160 REMARK 500 CYS B 123 N CYS B 123 CA -0.221 REMARK 500 CYS B 123 N CYS B 123 CA -0.221 REMARK 500 GLU B 171 CD GLU B 171 OE2 -0.084 REMARK 500 CYS B 186 N CYS B 186 CA -0.149 REMARK 500 CYS B 186 N CYS B 186 CA -0.182 REMARK 500 HIS B 188 NE2 HIS B 188 CD2 -0.072 REMARK 500 HIS B 275 NE2 HIS B 275 CD2 -0.093 REMARK 500 GLU B 279 CD GLU B 279 OE1 -0.069 REMARK 500 HIS B 282 NE2 HIS B 282 CD2 -0.092 REMARK 500 GLY B 304 C GLY B 304 O -0.098 REMARK 500 HIS B 319 NE2 HIS B 319 CD2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 VAL A 200 CA - C - O ANGL. DEV. = -18.2 DEGREES REMARK 500 VAL A 200 CA - C - O ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG B 104 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG B 104 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG B 104 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 CYS B 123 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 CYS B 186 CA - C - O ANGL. DEV. = -19.4 DEGREES REMARK 500 CYS B 186 CA - C - O ANGL. DEV. = -17.8 DEGREES REMARK 500 CYS B 186 CA - C - N ANGL. DEV. = 21.4 DEGREES REMARK 500 CYS B 186 CA - C - N ANGL. DEV. = 19.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 -135.82 61.38 REMARK 500 ILE A 93 -66.71 -90.75 REMARK 500 ARG A 211 -93.07 -106.76 REMARK 500 ASP A 265 -119.61 -128.69 REMARK 500 SER A 290 -84.71 -118.65 REMARK 500 GLU B 3 -46.83 -14.60 REMARK 500 HIS B 35 -104.58 53.61 REMARK 500 ARG B 104 112.78 -37.24 REMARK 500 ARG B 104 111.51 -35.31 REMARK 500 GLN B 190 165.50 68.29 REMARK 500 ASP B 249 -122.83 -99.10 REMARK 500 SER B 274 -84.00 -126.96 REMARK 500 ALA B 281 -7.06 84.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 103 ARG B 104 147.53 REMARK 500 ALA B 103 ARG B 104 145.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 200 24.22 REMARK 500 VAL A 200 23.86 REMARK 500 ARG B 104 10.36 REMARK 500 CYS B 123 12.06 REMARK 500 CYS B 123 12.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPH A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HDK RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH PHLOROGLUCINOL. REMARK 900 RELATED ID: 4HDM RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH P-CRESOL. REMARK 900 RELATED ID: 4HDN RELATED DB: PDB REMARK 900 SAME PROTEIN IN THE SUBSTRATE-FREE STATE. REMARK 900 RELATED ID: 4HDR RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH 5,6-DIMETHYLBENZIMIDAZOLE. DBREF 4HDS A 1 346 UNP F6MZ55 F6MZ55_9FIRM 5 350 DBREF 4HDS B 2 350 UNP F6MZ56 F6MZ56_9FIRM 2 350 SEQADV 4HDS GLY A -1 UNP F6MZ55 EXPRESSION TAG SEQADV 4HDS GLY A 0 UNP F6MZ55 EXPRESSION TAG SEQADV 4HDS MET B 1 UNP F6MZ56 EXPRESSION TAG SEQRES 1 A 348 GLY GLY MET SER LEU LEU GLN ALA THR VAL ALA LYS ILE SEQRES 2 A 348 MET ARG PRO ASP THR VAL ILE LYS ASP GLN VAL LYS THR SEQRES 3 A 348 LYS LEU ALA GLY VAL LEU GLN SER ALA GLY SER LEU GLY SEQRES 4 A 348 ARG LEU GLU ASP MET VAL GLU GLN TYR ALA GLY ILE THR SEQRES 5 A 348 GLY GLU LEU ASN PRO ALA LEU PRO LYS PRO CYS MET VAL SEQRES 6 A 348 VAL ALA SER ALA ASP HIS GLY VAL ALA ARG ARG VAL VAL SEQRES 7 A 348 SER ALA TYR PRO ILE GLU THR THR ILE HIS MET THR ALA SEQRES 8 A 348 ASN TYR LEU ILE SER GLN GLY ALA SER ALA ASN ALA PHE SEQRES 9 A 348 ALA ASN PHE CYS GLY ALA ASP MET VAL VAL VAL ASP MET SEQRES 10 A 348 GLY VAL ALA GLY ASP LEU SER TYR VAL PRO GLY LEU TRP SEQRES 11 A 348 HIS ARG LYS ILE ALA TYR GLY THR GLN ASP PHE THR GLU SEQRES 12 A 348 GLY PRO ALA MET THR ARG GLU GLN ALA ILE GLN ALA VAL SEQRES 13 A 348 GLU THR GLY ILE ASP ILE VAL ASN ASP ARG VAL LYS HIS SEQRES 14 A 348 GLY ASN ARG CYS PHE CYS LEU GLY GLU MET GLY ILE GLY SEQRES 15 A 348 ASN THR THR SER SER ALA THR ILE VAL GLY ALA PHE THR SEQRES 16 A 348 GLY LEU ALA PRO GLU LYS VAL THR GLY ARG GLY THR GLY SEQRES 17 A 348 ILE SER ASP SER ARG LEU LYS THR LYS MET GLU ILE VAL SEQRES 18 A 348 GLY ARG ALA LEU ALA VAL ASN LYS PRO ASN PRO GLN ASP SEQRES 19 A 348 GLY LEU ASP VAL LEU ALA LYS VAL GLY GLY PHE GLU LEU SEQRES 20 A 348 GLY ALA LEU ALA GLY VAL ILE LEU GLY SER ALA ALA ASN SEQRES 21 A 348 ARG CYS ALA VAL VAL ILE ASP GLY LEU ASN THR THR ALA SEQRES 22 A 348 ALA ALA LEU ILE ALA ASN VAL ILE HIS PRO LEU SER LYS SEQRES 23 A 348 GLU TYR MET PHE ALA SER HIS LEU SER GLY GLU PRO ALA SEQRES 24 A 348 HIS SER ILE ALA LEU ARG GLN LEU GLN LEU GLU ALA CYS SEQRES 25 A 348 LEU GLU LEU GLY VAL ARG LEU GLY GLU GLY ILE GLY ALA SEQRES 26 A 348 SER MET VAL VAL ASP MET LEU TYR VAL ALA ILE LYS LEU SEQRES 27 A 348 LEU ASN ASN ARG GLY GLY LYS ALA ASN ALA SEQRES 1 B 350 MET LEU GLU GLU LEU ILE ALA ALA ILE LYS PRO LEU ASP SEQRES 2 B 350 SER ILE ALA MET GLU GLN CYS GLN ARG ARG VAL ASP ASN SEQRES 3 B 350 LEU THR LYS PRO LEU ASN SER LEU HIS SER PHE GLU HIS SEQRES 4 B 350 ILE ALA CYS LYS LEU ALA GLY ILE SER GLY ASN PRO ARG SEQRES 5 B 350 PRO ARG ALA LEU GLU LYS SER ILE ILE ILE MET ALA ALA SEQRES 6 B 350 ASP ASN GLY VAL ALA MET ALA THR ASP GLN GLN GLN MET SEQRES 7 B 350 THR THR ALA ALA ARG LEU THR GLY PHE CYS GLN GLY GLN SEQRES 8 B 350 ALA PRO ILE GLN VAL PHE ALA ALA HIS VAL GLN ALA ARG SEQRES 9 B 350 LEU ILE MET VAL ASP ILE GLY VAL ALA ALA ASP LEU PRO SEQRES 10 B 350 HIS SER PRO ALA VAL CYS ARG LYS LYS LEU ALA TYR GLY SEQRES 11 B 350 SER ARG ASN SER THR GLU GLY PRO ALA MET THR ARG GLN SEQRES 12 B 350 GLN ALA ILE GLN ALA ILE GLU VAL GLY VAL ARG ILE ALA SEQRES 13 B 350 GLN ALA GLU ILE ALA ARG GLY CYS GLN VAL ILE GLY LEU SEQRES 14 B 350 GLY GLU MET GLY LEU GLY GLY LEU ALA ALA ALA MET ALA SEQRES 15 B 350 ILE VAL ALA CYS CYS HIS GLY GLN PRO LEU PRO GLY LEU SEQRES 16 B 350 ALA GLY ARG GLU ALA GLU LEU VAL ASN THR ALA ILE ALA SEQRES 17 B 350 VAL ASN ARG PRO ASN ALA ALA ASP PRO LEU ASP ILE LEU SEQRES 18 B 350 THR LYS VAL GLY GLY LEU ALA ILE ALA GLY LEU VAL GLY SEQRES 19 B 350 VAL ILE LEU GLY ALA ALA ALA GLY ARG ALA ALA VAL VAL SEQRES 20 B 350 LEU ASP GLY LEU ALA THR SER THR ALA ALA LEU ILE ALA SEQRES 21 B 350 ILE ASN LEU VAL PRO ASP VAL LYS PRO TYR LEU ILE GLY SEQRES 22 B 350 SER HIS PHE ALA ALA GLU PRO ALA HIS GLU THR ALA LEU SEQRES 23 B 350 ALA LEU LEU ASP VAL PRO ALA TYR LEU GLN LEU LYS MET SEQRES 24 B 350 ASN LEU GLY GLU GLY THR GLY ALA ALA LEU GLY MET SER SEQRES 25 B 350 VAL ILE ASN ALA THR LEU HIS MET LEU ASN ASP MET LYS SEQRES 26 B 350 THR PHE GLY GLU ALA GLU VAL ALA VAL ALA GLN ASP GLY SEQRES 27 B 350 PRO GLY ALA LEU ARG GLN SER LYS ASP VAL ARG ASP HET IPH A 801 7 HET EDO B 901 4 HET EDO B 902 4 HETNAM IPH PHENOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 IPH C6 H6 O FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *204(H2 O) HELIX 1 1 SER A 2 ILE A 11 1 10 HELIX 2 2 ASP A 15 GLN A 31 1 17 HELIX 3 3 GLY A 37 GLY A 51 1 15 HELIX 4 4 HIS A 69 VAL A 75 5 7 HELIX 5 5 GLU A 82 ILE A 93 1 12 HELIX 6 6 ALA A 97 CYS A 106 1 10 HELIX 7 7 THR A 146 VAL A 165 1 20 HELIX 8 8 LYS A 166 GLY A 168 5 3 HELIX 9 9 GLY A 180 GLY A 194 1 15 HELIX 10 10 ALA A 196 GLY A 202 1 7 HELIX 11 11 THR A 214 LYS A 227 1 14 HELIX 12 12 ASP A 232 GLY A 241 1 10 HELIX 13 13 GLY A 242 ASN A 258 1 17 HELIX 14 14 GLY A 266 HIS A 280 1 15 HELIX 15 15 PRO A 281 GLU A 285 5 5 HELIX 16 16 GLU A 295 LEU A 305 1 11 HELIX 17 17 GLY A 320 ASN A 338 1 19 HELIX 18 18 GLU B 3 ALA B 8 1 6 HELIX 19 19 ASP B 13 LEU B 27 1 15 HELIX 20 20 HIS B 35 GLY B 49 1 15 HELIX 21 21 THR B 79 GLN B 89 1 11 HELIX 22 22 ALA B 92 VAL B 101 1 10 HELIX 23 23 ASN B 133 GLY B 137 5 5 HELIX 24 24 THR B 141 ARG B 162 1 22 HELIX 25 25 GLY B 175 GLY B 189 1 15 HELIX 26 26 ALA B 196 ARG B 211 1 16 HELIX 27 27 ASP B 216 GLY B 225 1 10 HELIX 28 28 GLY B 226 GLY B 242 1 17 HELIX 29 29 GLY B 250 VAL B 264 1 15 HELIX 30 30 PRO B 265 PRO B 269 5 5 HELIX 31 31 ALA B 281 ASP B 290 1 10 HELIX 32 32 GLY B 304 MET B 324 1 21 HELIX 33 33 THR B 326 VAL B 332 1 7 SHEET 1 A 6 TRP A 128 HIS A 129 0 SHEET 2 A 6 ASP A 109 GLY A 116 1 N VAL A 112 O TRP A 128 SHEET 3 A 6 PRO A 60 ALA A 67 1 N MET A 62 O ASP A 109 SHEET 4 A 6 CYS A 171 MET A 177 1 O CYS A 173 N VAL A 63 SHEET 5 A 6 ALA A 261 VAL A 263 1 O VAL A 263 N PHE A 172 SHEET 6 A 6 MET A 287 PHE A 288 1 O PHE A 288 N VAL A 262 SHEET 1 B 6 VAL B 122 ARG B 124 0 SHEET 2 B 6 ARG B 104 GLY B 111 1 N ASP B 109 O CYS B 123 SHEET 3 B 6 LYS B 58 ALA B 65 1 N ILE B 60 O ILE B 106 SHEET 4 B 6 VAL B 166 MET B 172 1 O GLY B 168 N SER B 59 SHEET 5 B 6 ALA B 245 VAL B 247 1 O ALA B 245 N ILE B 167 SHEET 6 B 6 LEU B 271 ILE B 272 1 O ILE B 272 N VAL B 246 CISPEP 1 PRO B 193 GLY B 194 0 -23.59 SITE 1 AC1 6 MET A 87 MET A 177 LEU A 317 GLU A 319 SITE 2 AC1 6 HOH A 901 PRO B 30 SITE 1 AC2 5 GLN B 190 PRO B 191 LEU B 192 LEU B 195 SITE 2 AC2 5 ASN B 204 SITE 1 AC3 6 PHE A 105 ASP A 328 HIS B 100 GLN B 102 SITE 2 AC3 6 SER B 312 ASN B 315 CRYST1 52.547 77.213 151.522 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019031 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006600 0.00000