data_4HDU # _entry.id 4HDU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HDU pdb_00004hdu 10.2210/pdb4hdu/pdb NDB NA2046 ? ? RCSB RCSB075341 ? ? WWPDB D_1000075341 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4HDV _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HDU _pdbx_database_status.recvd_initial_deposition_date 2012-10-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tubbs, J.L.' 1 'Tainer, J.A.' 2 # _citation.id primary _citation.title 'Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-{pi} interactions.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 18755 _citation.page_last 18760 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23112169 _citation.pdbx_database_id_DOI 10.1073/pnas.1209451109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilkinson, O.J.' 1 ? primary 'Latypov, V.' 2 ? primary 'Tubbs, J.L.' 3 ? primary 'Millington, C.L.' 4 ? primary 'Morita, R.' 5 ? primary 'Blackburn, H.' 6 ? primary 'Marriott, A.' 7 ? primary 'McGown, G.' 8 ? primary 'Thorncroft, M.' 9 ? primary 'Watson, A.J.' 10 ? primary 'Connolly, B.A.' 11 ? primary 'Grasby, J.A.' 12 ? primary 'Masui, R.' 13 ? primary 'Hunter, C.A.' 14 ? primary 'Tainer, J.A.' 15 ? primary 'Margison, G.P.' 16 ? primary 'Williams, D.M.' 17 ? # _cell.entry_id 4HDU _cell.length_a 59.978 _cell.length_b 59.978 _cell.length_c 235.488 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HDU _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alkyltransferase-like protein 1' 13662.412 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*CP*AP*TP*GP*(2PR)P*CP*TP*AP*GP*TP*A)-3'" 3975.611 1 ? ? ? ? 3 polymer syn "5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'" 3951.586 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ATL1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DT)(DG)(2PR)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGGCTAGTA B ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)' CTACTAGCCATGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 MET n 1 4 ASP n 1 5 GLU n 1 6 PHE n 1 7 TYR n 1 8 THR n 1 9 LYS n 1 10 VAL n 1 11 TYR n 1 12 ASP n 1 13 ALA n 1 14 VAL n 1 15 CYS n 1 16 GLU n 1 17 ILE n 1 18 PRO n 1 19 TYR n 1 20 GLY n 1 21 LYS n 1 22 VAL n 1 23 SER n 1 24 THR n 1 25 TYR n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 VAL n 1 33 GLY n 1 34 MET n 1 35 PRO n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 ARG n 1 40 GLN n 1 41 VAL n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 MET n 1 46 LYS n 1 47 HIS n 1 48 LEU n 1 49 HIS n 1 50 PRO n 1 51 GLU n 1 52 THR n 1 53 HIS n 1 54 VAL n 1 55 PRO n 1 56 TRP n 1 57 HIS n 1 58 ARG n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 ARG n 1 64 GLY n 1 65 THR n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 ARG n 1 70 ASP n 1 71 ILE n 1 72 SER n 1 73 ALA n 1 74 GLY n 1 75 GLU n 1 76 GLN n 1 77 ARG n 1 78 GLN n 1 79 LYS n 1 80 ASP n 1 81 ARG n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 GLU n 1 89 ILE n 1 90 TYR n 1 91 GLN n 1 92 THR n 1 93 SER n 1 94 LEU n 1 95 GLY n 1 96 GLU n 1 97 TYR n 1 98 LYS n 1 99 LEU n 1 100 ASN n 1 101 LEU n 1 102 PRO n 1 103 GLU n 1 104 TYR n 1 105 MET n 1 106 TRP n 1 107 LYS n 1 108 PRO n 1 109 GLY n 1 110 SER n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 2PR n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DA n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DA n 3 7 DG n 3 8 DC n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DG n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'atl1, SPAC1250.04c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4896 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ATL1_SCHPO Q9UTN9 1 ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKP ; 1 ? 2 PDB 4HDU 4HDU 2 'GCCATG(2PR)CTAGTA' 1 ? 3 PDB 4HDU 4HDU 3 CTACTAGCCATGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HDU A 1 ? 108 ? Q9UTN9 1 ? 108 ? 1 108 2 2 4HDU B 1 ? 13 ? 4HDU 1 ? 13 ? 1 13 3 3 4HDU C 1 ? 13 ? 4HDU 14 ? 26 ? 14 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HDU GLY A 109 ? UNP Q9UTN9 ? ? 'expression tag' 109 1 1 4HDU SER A 110 ? UNP Q9UTN9 ? ? 'expression tag' 110 2 1 4HDU HIS A 111 ? UNP Q9UTN9 ? ? 'expression tag' 111 3 1 4HDU HIS A 112 ? UNP Q9UTN9 ? ? 'expression tag' 112 4 1 4HDU HIS A 113 ? UNP Q9UTN9 ? ? 'expression tag' 113 5 1 4HDU HIS A 114 ? UNP Q9UTN9 ? ? 'expression tag' 114 6 1 4HDU HIS A 115 ? UNP Q9UTN9 ? ? 'expression tag' 115 7 1 4HDU HIS A 116 ? UNP Q9UTN9 ? ? 'expression tag' 116 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PR 'DNA linking' n "2-AMINO-9-[2-DEOXYRIBOFURANOSYL]-9H-PURINE-5'-MONOPHOSPHATE" "2-AMINOPURINE-2'-DEOXYRIBO-5'-MONOPHOSPHATE" 'C10 H14 N5 O6 P' 331.222 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4HDU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 56.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pdbx_details '20% mPEG2000, 0.5 M sodium formate, 200 mM imidazole-malate, 30% xylose, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2011-05-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Side scattering bent cube-root I-beam single crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 # _reflns.entry_id 4HDU _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.848 _reflns.number_obs 6482 _reflns.number_all 6482 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 83.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 19.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.848 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.369 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 12.2 _reflns_shell.pdbx_redundancy 20.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4HDU _refine.ls_number_reflns_obs 6352 _refine.ls_number_reflns_all 6352 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.21 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.890 _refine.ls_d_res_high 2.848 _refine.ls_percent_reflns_obs 97.90 _refine.ls_R_factor_obs 0.2191 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2134 _refine.ls_R_factor_R_free 0.2669 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.08 _refine.ls_number_reflns_R_free 640 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 8.4043 _refine.aniso_B[2][2] 8.4043 _refine.aniso_B[3][3] -16.8087 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.331 _refine.solvent_model_param_bsol 54.577 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3GVA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.40 _refine.pdbx_overall_phase_error 25.65 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 526 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1416 _refine_hist.d_res_high 2.848 _refine_hist.d_res_low 34.890 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1541 ? 'X-RAY DIFFRACTION' f_angle_d 0.780 ? ? 2153 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 22.584 ? ? 616 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.039 ? ? 227 ? 'X-RAY DIFFRACTION' f_plane_restr 0.002 ? ? 188 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.848 3.0679 1041 0.2809 93.0 0.3331 . . 116 . . . . 'X-RAY DIFFRACTION' . 3.0679 3.3764 1106 0.2178 98.0 0.3185 . . 124 . . . . 'X-RAY DIFFRACTION' . 3.3764 3.8645 1124 0.2280 99.0 0.2680 . . 127 . . . . 'X-RAY DIFFRACTION' . 3.8645 4.8667 1164 0.1936 100.0 0.2661 . . 130 . . . . 'X-RAY DIFFRACTION' . 4.8667 34.8930 1277 0.2012 99.0 0.2335 . . 143 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4HDU _struct.title 'Crystal structure of S. pombe ATL1 in complex with damaged DNA containing 2-aminopurine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HDU _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;alkyltransferase, DNA repair, nucleotide excision repair, NER, base repair, DNA damage, guanine, alkylation, DNA BINDING PROTEIN-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? ILE A 17 ? ARG A 2 ILE A 17 1 ? 16 HELX_P HELX_P2 2 TYR A 25 ? VAL A 32 ? TYR A 25 VAL A 32 1 ? 8 HELX_P HELX_P3 3 TYR A 37 ? LEU A 48 ? TYR A 37 LEU A 48 1 ? 12 HELX_P HELX_P4 4 PRO A 55 ? HIS A 57 ? PRO A 55 HIS A 57 5 ? 3 HELX_P HELX_P5 5 ILE A 71 ? GLU A 85 ? ILE A 71 GLU A 85 1 ? 15 HELX_P HELX_P6 6 ASN A 100 ? MET A 105 ? ASN A 100 MET A 105 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 2PR 7 P ? ? B DG 6 B 2PR 7 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? B 2PR 7 "O3'" ? ? ? 1_555 B DC 8 P ? ? B 2PR 7 B DC 8 1_555 ? ? ? ? ? ? ? 1.608 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 4 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 4 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 10 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 12 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 12 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 13 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 13 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 23 ? THR A 24 ? SER A 23 THR A 24 A 2 VAL A 59 ? ILE A 60 ? VAL A 59 ILE A 60 B 1 TYR A 90 ? GLN A 91 ? TYR A 90 GLN A 91 B 2 TYR A 97 ? LYS A 98 ? TYR A 97 LYS A 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 23 ? N SER A 23 O ILE A 60 ? O ILE A 60 B 1 2 N TYR A 90 ? N TYR A 90 O LYS A 98 ? O LYS A 98 # _database_PDB_matrix.entry_id 4HDU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4HDU _atom_sites.fract_transf_matrix[1][1] 0.016673 _atom_sites.fract_transf_matrix[1][2] 0.009626 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019252 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004247 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 GLY 109 109 ? ? ? A . n A 1 110 SER 110 110 ? ? ? A . n A 1 111 HIS 111 111 ? ? ? A . n A 1 112 HIS 112 112 ? ? ? A . n A 1 113 HIS 113 113 ? ? ? A . n A 1 114 HIS 114 114 ? ? ? A . n A 1 115 HIS 115 115 ? ? ? A . n A 1 116 HIS 116 116 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 2PR 7 7 7 2PR 2PR B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DA 13 13 13 DA DA B . n C 3 1 DC 1 14 14 DC DC C . n C 3 2 DT 2 15 15 DT DT C . n C 3 3 DA 3 16 16 DA DA C . n C 3 4 DC 4 17 17 DC DC C . n C 3 5 DT 5 18 18 DT DT C . n C 3 6 DA 6 19 19 DA DA C . n C 3 7 DG 7 20 20 DG DG C . n C 3 8 DC 8 21 21 DC DC C . n C 3 9 DC 9 22 22 DC DC C . n C 3 10 DA 10 23 23 DA DA C . n C 3 11 DT 11 24 24 DT DT C . n C 3 12 DG 12 25 25 DG DG C . n C 3 13 DG 13 26 26 DG DG C . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 2PR _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 2PR _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3550 ? 1 MORE -10 ? 1 'SSA (A^2)' 9490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-26 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" B DG 6 ? ? P B 2PR 7 ? ? OP2 B 2PR 7 ? ? 69.63 105.20 -35.57 2.20 Y 2 1 "O3'" B DG 6 ? ? P B 2PR 7 ? ? OP1 B 2PR 7 ? ? 141.92 110.50 31.42 1.10 Y 3 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.66 108.30 3.36 0.30 N 4 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.23 108.30 1.93 0.30 N 5 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.18 108.30 1.88 0.30 N 6 1 "O4'" C DG 25 ? ? "C1'" C DG 25 ? ? N9 C DG 25 ? ? 111.62 108.30 3.32 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 37 ? ? -94.07 30.35 2 1 LEU A 94 ? ? 70.61 50.47 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 109 ? A GLY 109 2 1 Y 1 A SER 110 ? A SER 110 3 1 Y 1 A HIS 111 ? A HIS 111 4 1 Y 1 A HIS 112 ? A HIS 112 5 1 Y 1 A HIS 113 ? A HIS 113 6 1 Y 1 A HIS 114 ? A HIS 114 7 1 Y 1 A HIS 115 ? A HIS 115 8 1 Y 1 A HIS 116 ? A HIS 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2PR OP3 O N N 1 2PR P P N N 2 2PR OP1 O N N 3 2PR OP2 O N N 4 2PR "O5'" O N N 5 2PR "C5'" C N N 6 2PR "C4'" C N R 7 2PR "O4'" O N N 8 2PR "C3'" C N S 9 2PR "O3'" O N N 10 2PR "C2'" C N N 11 2PR "C1'" C N R 12 2PR N9 N Y N 13 2PR C8 C Y N 14 2PR N7 N Y N 15 2PR C5 C Y N 16 2PR C6 C Y N 17 2PR N1 N Y N 18 2PR C2 C Y N 19 2PR N2 N N N 20 2PR N3 N Y N 21 2PR C4 C Y N 22 2PR HOP3 H N N 23 2PR HOP2 H N N 24 2PR "H5'" H N N 25 2PR "H5''" H N N 26 2PR "H4'" H N N 27 2PR "H3'" H N N 28 2PR "HO3'" H N N 29 2PR "H2'" H N N 30 2PR "H2''" H N N 31 2PR "H1'" H N N 32 2PR H8 H N N 33 2PR H6 H N N 34 2PR HN21 H N N 35 2PR HN22 H N N 36 ALA N N N N 37 ALA CA C N S 38 ALA C C N N 39 ALA O O N N 40 ALA CB C N N 41 ALA OXT O N N 42 ALA H H N N 43 ALA H2 H N N 44 ALA HA H N N 45 ALA HB1 H N N 46 ALA HB2 H N N 47 ALA HB3 H N N 48 ALA HXT H N N 49 ARG N N N N 50 ARG CA C N S 51 ARG C C N N 52 ARG O O N N 53 ARG CB C N N 54 ARG CG C N N 55 ARG CD C N N 56 ARG NE N N N 57 ARG CZ C N N 58 ARG NH1 N N N 59 ARG NH2 N N N 60 ARG OXT O N N 61 ARG H H N N 62 ARG H2 H N N 63 ARG HA H N N 64 ARG HB2 H N N 65 ARG HB3 H N N 66 ARG HG2 H N N 67 ARG HG3 H N N 68 ARG HD2 H N N 69 ARG HD3 H N N 70 ARG HE H N N 71 ARG HH11 H N N 72 ARG HH12 H N N 73 ARG HH21 H N N 74 ARG HH22 H N N 75 ARG HXT H N N 76 ASN N N N N 77 ASN CA C N S 78 ASN C C N N 79 ASN O O N N 80 ASN CB C N N 81 ASN CG C N N 82 ASN OD1 O N N 83 ASN ND2 N N N 84 ASN OXT O N N 85 ASN H H N N 86 ASN H2 H N N 87 ASN HA H N N 88 ASN HB2 H N N 89 ASN HB3 H N N 90 ASN HD21 H N N 91 ASN HD22 H N N 92 ASN HXT H N N 93 ASP N N N N 94 ASP CA C N S 95 ASP C C N N 96 ASP O O N N 97 ASP CB C N N 98 ASP CG C N N 99 ASP OD1 O N N 100 ASP OD2 O N N 101 ASP OXT O N N 102 ASP H H N N 103 ASP H2 H N N 104 ASP HA H N N 105 ASP HB2 H N N 106 ASP HB3 H N N 107 ASP HD2 H N N 108 ASP HXT H N N 109 CYS N N N N 110 CYS CA C N R 111 CYS C C N N 112 CYS O O N N 113 CYS CB C N N 114 CYS SG S N N 115 CYS OXT O N N 116 CYS H H N N 117 CYS H2 H N N 118 CYS HA H N N 119 CYS HB2 H N N 120 CYS HB3 H N N 121 CYS HG H N N 122 CYS HXT H N N 123 DA OP3 O N N 124 DA P P N N 125 DA OP1 O N N 126 DA OP2 O N N 127 DA "O5'" O N N 128 DA "C5'" C N N 129 DA "C4'" C N R 130 DA "O4'" O N N 131 DA "C3'" C N S 132 DA "O3'" O N N 133 DA "C2'" C N N 134 DA "C1'" C N R 135 DA N9 N Y N 136 DA C8 C Y N 137 DA N7 N Y N 138 DA C5 C Y N 139 DA C6 C Y N 140 DA N6 N N N 141 DA N1 N Y N 142 DA C2 C Y N 143 DA N3 N Y N 144 DA C4 C Y N 145 DA HOP3 H N N 146 DA HOP2 H N N 147 DA "H5'" H N N 148 DA "H5''" H N N 149 DA "H4'" H N N 150 DA "H3'" H N N 151 DA "HO3'" H N N 152 DA "H2'" H N N 153 DA "H2''" H N N 154 DA "H1'" H N N 155 DA H8 H N N 156 DA H61 H N N 157 DA H62 H N N 158 DA H2 H N N 159 DC OP3 O N N 160 DC P P N N 161 DC OP1 O N N 162 DC OP2 O N N 163 DC "O5'" O N N 164 DC "C5'" C N N 165 DC "C4'" C N R 166 DC "O4'" O N N 167 DC "C3'" C N S 168 DC "O3'" O N N 169 DC "C2'" C N N 170 DC "C1'" C N R 171 DC N1 N N N 172 DC C2 C N N 173 DC O2 O N N 174 DC N3 N N N 175 DC C4 C N N 176 DC N4 N N N 177 DC C5 C N N 178 DC C6 C N N 179 DC HOP3 H N N 180 DC HOP2 H N N 181 DC "H5'" H N N 182 DC "H5''" H N N 183 DC "H4'" H N N 184 DC "H3'" H N N 185 DC "HO3'" H N N 186 DC "H2'" H N N 187 DC "H2''" H N N 188 DC "H1'" H N N 189 DC H41 H N N 190 DC H42 H N N 191 DC H5 H N N 192 DC H6 H N N 193 DG OP3 O N N 194 DG P P N N 195 DG OP1 O N N 196 DG OP2 O N N 197 DG "O5'" O N N 198 DG "C5'" C N N 199 DG "C4'" C N R 200 DG "O4'" O N N 201 DG "C3'" C N S 202 DG "O3'" O N N 203 DG "C2'" C N N 204 DG "C1'" C N R 205 DG N9 N Y N 206 DG C8 C Y N 207 DG N7 N Y N 208 DG C5 C Y N 209 DG C6 C N N 210 DG O6 O N N 211 DG N1 N N N 212 DG C2 C N N 213 DG N2 N N N 214 DG N3 N N N 215 DG C4 C Y N 216 DG HOP3 H N N 217 DG HOP2 H N N 218 DG "H5'" H N N 219 DG "H5''" H N N 220 DG "H4'" H N N 221 DG "H3'" H N N 222 DG "HO3'" H N N 223 DG "H2'" H N N 224 DG "H2''" H N N 225 DG "H1'" H N N 226 DG H8 H N N 227 DG H1 H N N 228 DG H21 H N N 229 DG H22 H N N 230 DT OP3 O N N 231 DT P P N N 232 DT OP1 O N N 233 DT OP2 O N N 234 DT "O5'" O N N 235 DT "C5'" C N N 236 DT "C4'" C N R 237 DT "O4'" O N N 238 DT "C3'" C N S 239 DT "O3'" O N N 240 DT "C2'" C N N 241 DT "C1'" C N R 242 DT N1 N N N 243 DT C2 C N N 244 DT O2 O N N 245 DT N3 N N N 246 DT C4 C N N 247 DT O4 O N N 248 DT C5 C N N 249 DT C7 C N N 250 DT C6 C N N 251 DT HOP3 H N N 252 DT HOP2 H N N 253 DT "H5'" H N N 254 DT "H5''" H N N 255 DT "H4'" H N N 256 DT "H3'" H N N 257 DT "HO3'" H N N 258 DT "H2'" H N N 259 DT "H2''" H N N 260 DT "H1'" H N N 261 DT H3 H N N 262 DT H71 H N N 263 DT H72 H N N 264 DT H73 H N N 265 DT H6 H N N 266 GLN N N N N 267 GLN CA C N S 268 GLN C C N N 269 GLN O O N N 270 GLN CB C N N 271 GLN CG C N N 272 GLN CD C N N 273 GLN OE1 O N N 274 GLN NE2 N N N 275 GLN OXT O N N 276 GLN H H N N 277 GLN H2 H N N 278 GLN HA H N N 279 GLN HB2 H N N 280 GLN HB3 H N N 281 GLN HG2 H N N 282 GLN HG3 H N N 283 GLN HE21 H N N 284 GLN HE22 H N N 285 GLN HXT H N N 286 GLU N N N N 287 GLU CA C N S 288 GLU C C N N 289 GLU O O N N 290 GLU CB C N N 291 GLU CG C N N 292 GLU CD C N N 293 GLU OE1 O N N 294 GLU OE2 O N N 295 GLU OXT O N N 296 GLU H H N N 297 GLU H2 H N N 298 GLU HA H N N 299 GLU HB2 H N N 300 GLU HB3 H N N 301 GLU HG2 H N N 302 GLU HG3 H N N 303 GLU HE2 H N N 304 GLU HXT H N N 305 GLY N N N N 306 GLY CA C N N 307 GLY C C N N 308 GLY O O N N 309 GLY OXT O N N 310 GLY H H N N 311 GLY H2 H N N 312 GLY HA2 H N N 313 GLY HA3 H N N 314 GLY HXT H N N 315 HIS N N N N 316 HIS CA C N S 317 HIS C C N N 318 HIS O O N N 319 HIS CB C N N 320 HIS CG C Y N 321 HIS ND1 N Y N 322 HIS CD2 C Y N 323 HIS CE1 C Y N 324 HIS NE2 N Y N 325 HIS OXT O N N 326 HIS H H N N 327 HIS H2 H N N 328 HIS HA H N N 329 HIS HB2 H N N 330 HIS HB3 H N N 331 HIS HD1 H N N 332 HIS HD2 H N N 333 HIS HE1 H N N 334 HIS HE2 H N N 335 HIS HXT H N N 336 ILE N N N N 337 ILE CA C N S 338 ILE C C N N 339 ILE O O N N 340 ILE CB C N S 341 ILE CG1 C N N 342 ILE CG2 C N N 343 ILE CD1 C N N 344 ILE OXT O N N 345 ILE H H N N 346 ILE H2 H N N 347 ILE HA H N N 348 ILE HB H N N 349 ILE HG12 H N N 350 ILE HG13 H N N 351 ILE HG21 H N N 352 ILE HG22 H N N 353 ILE HG23 H N N 354 ILE HD11 H N N 355 ILE HD12 H N N 356 ILE HD13 H N N 357 ILE HXT H N N 358 LEU N N N N 359 LEU CA C N S 360 LEU C C N N 361 LEU O O N N 362 LEU CB C N N 363 LEU CG C N N 364 LEU CD1 C N N 365 LEU CD2 C N N 366 LEU OXT O N N 367 LEU H H N N 368 LEU H2 H N N 369 LEU HA H N N 370 LEU HB2 H N N 371 LEU HB3 H N N 372 LEU HG H N N 373 LEU HD11 H N N 374 LEU HD12 H N N 375 LEU HD13 H N N 376 LEU HD21 H N N 377 LEU HD22 H N N 378 LEU HD23 H N N 379 LEU HXT H N N 380 LYS N N N N 381 LYS CA C N S 382 LYS C C N N 383 LYS O O N N 384 LYS CB C N N 385 LYS CG C N N 386 LYS CD C N N 387 LYS CE C N N 388 LYS NZ N N N 389 LYS OXT O N N 390 LYS H H N N 391 LYS H2 H N N 392 LYS HA H N N 393 LYS HB2 H N N 394 LYS HB3 H N N 395 LYS HG2 H N N 396 LYS HG3 H N N 397 LYS HD2 H N N 398 LYS HD3 H N N 399 LYS HE2 H N N 400 LYS HE3 H N N 401 LYS HZ1 H N N 402 LYS HZ2 H N N 403 LYS HZ3 H N N 404 LYS HXT H N N 405 MET N N N N 406 MET CA C N S 407 MET C C N N 408 MET O O N N 409 MET CB C N N 410 MET CG C N N 411 MET SD S N N 412 MET CE C N N 413 MET OXT O N N 414 MET H H N N 415 MET H2 H N N 416 MET HA H N N 417 MET HB2 H N N 418 MET HB3 H N N 419 MET HG2 H N N 420 MET HG3 H N N 421 MET HE1 H N N 422 MET HE2 H N N 423 MET HE3 H N N 424 MET HXT H N N 425 PHE N N N N 426 PHE CA C N S 427 PHE C C N N 428 PHE O O N N 429 PHE CB C N N 430 PHE CG C Y N 431 PHE CD1 C Y N 432 PHE CD2 C Y N 433 PHE CE1 C Y N 434 PHE CE2 C Y N 435 PHE CZ C Y N 436 PHE OXT O N N 437 PHE H H N N 438 PHE H2 H N N 439 PHE HA H N N 440 PHE HB2 H N N 441 PHE HB3 H N N 442 PHE HD1 H N N 443 PHE HD2 H N N 444 PHE HE1 H N N 445 PHE HE2 H N N 446 PHE HZ H N N 447 PHE HXT H N N 448 PRO N N N N 449 PRO CA C N S 450 PRO C C N N 451 PRO O O N N 452 PRO CB C N N 453 PRO CG C N N 454 PRO CD C N N 455 PRO OXT O N N 456 PRO H H N N 457 PRO HA H N N 458 PRO HB2 H N N 459 PRO HB3 H N N 460 PRO HG2 H N N 461 PRO HG3 H N N 462 PRO HD2 H N N 463 PRO HD3 H N N 464 PRO HXT H N N 465 SER N N N N 466 SER CA C N S 467 SER C C N N 468 SER O O N N 469 SER CB C N N 470 SER OG O N N 471 SER OXT O N N 472 SER H H N N 473 SER H2 H N N 474 SER HA H N N 475 SER HB2 H N N 476 SER HB3 H N N 477 SER HG H N N 478 SER HXT H N N 479 THR N N N N 480 THR CA C N S 481 THR C C N N 482 THR O O N N 483 THR CB C N R 484 THR OG1 O N N 485 THR CG2 C N N 486 THR OXT O N N 487 THR H H N N 488 THR H2 H N N 489 THR HA H N N 490 THR HB H N N 491 THR HG1 H N N 492 THR HG21 H N N 493 THR HG22 H N N 494 THR HG23 H N N 495 THR HXT H N N 496 TRP N N N N 497 TRP CA C N S 498 TRP C C N N 499 TRP O O N N 500 TRP CB C N N 501 TRP CG C Y N 502 TRP CD1 C Y N 503 TRP CD2 C Y N 504 TRP NE1 N Y N 505 TRP CE2 C Y N 506 TRP CE3 C Y N 507 TRP CZ2 C Y N 508 TRP CZ3 C Y N 509 TRP CH2 C Y N 510 TRP OXT O N N 511 TRP H H N N 512 TRP H2 H N N 513 TRP HA H N N 514 TRP HB2 H N N 515 TRP HB3 H N N 516 TRP HD1 H N N 517 TRP HE1 H N N 518 TRP HE3 H N N 519 TRP HZ2 H N N 520 TRP HZ3 H N N 521 TRP HH2 H N N 522 TRP HXT H N N 523 TYR N N N N 524 TYR CA C N S 525 TYR C C N N 526 TYR O O N N 527 TYR CB C N N 528 TYR CG C Y N 529 TYR CD1 C Y N 530 TYR CD2 C Y N 531 TYR CE1 C Y N 532 TYR CE2 C Y N 533 TYR CZ C Y N 534 TYR OH O N N 535 TYR OXT O N N 536 TYR H H N N 537 TYR H2 H N N 538 TYR HA H N N 539 TYR HB2 H N N 540 TYR HB3 H N N 541 TYR HD1 H N N 542 TYR HD2 H N N 543 TYR HE1 H N N 544 TYR HE2 H N N 545 TYR HH H N N 546 TYR HXT H N N 547 VAL N N N N 548 VAL CA C N S 549 VAL C C N N 550 VAL O O N N 551 VAL CB C N N 552 VAL CG1 C N N 553 VAL CG2 C N N 554 VAL OXT O N N 555 VAL H H N N 556 VAL H2 H N N 557 VAL HA H N N 558 VAL HB H N N 559 VAL HG11 H N N 560 VAL HG12 H N N 561 VAL HG13 H N N 562 VAL HG21 H N N 563 VAL HG22 H N N 564 VAL HG23 H N N 565 VAL HXT H N N 566 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2PR OP3 P sing N N 1 2PR OP3 HOP3 sing N N 2 2PR P OP1 doub N N 3 2PR P OP2 sing N N 4 2PR P "O5'" sing N N 5 2PR OP2 HOP2 sing N N 6 2PR "O5'" "C5'" sing N N 7 2PR "C5'" "C4'" sing N N 8 2PR "C5'" "H5'" sing N N 9 2PR "C5'" "H5''" sing N N 10 2PR "C4'" "O4'" sing N N 11 2PR "C4'" "C3'" sing N N 12 2PR "C4'" "H4'" sing N N 13 2PR "O4'" "C1'" sing N N 14 2PR "C3'" "O3'" sing N N 15 2PR "C3'" "C2'" sing N N 16 2PR "C3'" "H3'" sing N N 17 2PR "O3'" "HO3'" sing N N 18 2PR "C2'" "C1'" sing N N 19 2PR "C2'" "H2'" sing N N 20 2PR "C2'" "H2''" sing N N 21 2PR "C1'" N9 sing N N 22 2PR "C1'" "H1'" sing N N 23 2PR N9 C8 sing Y N 24 2PR N9 C4 sing Y N 25 2PR C8 N7 doub Y N 26 2PR C8 H8 sing N N 27 2PR N7 C5 sing Y N 28 2PR C5 C6 sing Y N 29 2PR C5 C4 doub Y N 30 2PR C6 N1 doub Y N 31 2PR C6 H6 sing N N 32 2PR N1 C2 sing Y N 33 2PR C2 N2 sing N N 34 2PR C2 N3 doub Y N 35 2PR N2 HN21 sing N N 36 2PR N2 HN22 sing N N 37 2PR N3 C4 sing Y N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 HIS N CA sing N N 316 HIS N H sing N N 317 HIS N H2 sing N N 318 HIS CA C sing N N 319 HIS CA CB sing N N 320 HIS CA HA sing N N 321 HIS C O doub N N 322 HIS C OXT sing N N 323 HIS CB CG sing N N 324 HIS CB HB2 sing N N 325 HIS CB HB3 sing N N 326 HIS CG ND1 sing Y N 327 HIS CG CD2 doub Y N 328 HIS ND1 CE1 doub Y N 329 HIS ND1 HD1 sing N N 330 HIS CD2 NE2 sing Y N 331 HIS CD2 HD2 sing N N 332 HIS CE1 NE2 sing Y N 333 HIS CE1 HE1 sing N N 334 HIS NE2 HE2 sing N N 335 HIS OXT HXT sing N N 336 ILE N CA sing N N 337 ILE N H sing N N 338 ILE N H2 sing N N 339 ILE CA C sing N N 340 ILE CA CB sing N N 341 ILE CA HA sing N N 342 ILE C O doub N N 343 ILE C OXT sing N N 344 ILE CB CG1 sing N N 345 ILE CB CG2 sing N N 346 ILE CB HB sing N N 347 ILE CG1 CD1 sing N N 348 ILE CG1 HG12 sing N N 349 ILE CG1 HG13 sing N N 350 ILE CG2 HG21 sing N N 351 ILE CG2 HG22 sing N N 352 ILE CG2 HG23 sing N N 353 ILE CD1 HD11 sing N N 354 ILE CD1 HD12 sing N N 355 ILE CD1 HD13 sing N N 356 ILE OXT HXT sing N N 357 LEU N CA sing N N 358 LEU N H sing N N 359 LEU N H2 sing N N 360 LEU CA C sing N N 361 LEU CA CB sing N N 362 LEU CA HA sing N N 363 LEU C O doub N N 364 LEU C OXT sing N N 365 LEU CB CG sing N N 366 LEU CB HB2 sing N N 367 LEU CB HB3 sing N N 368 LEU CG CD1 sing N N 369 LEU CG CD2 sing N N 370 LEU CG HG sing N N 371 LEU CD1 HD11 sing N N 372 LEU CD1 HD12 sing N N 373 LEU CD1 HD13 sing N N 374 LEU CD2 HD21 sing N N 375 LEU CD2 HD22 sing N N 376 LEU CD2 HD23 sing N N 377 LEU OXT HXT sing N N 378 LYS N CA sing N N 379 LYS N H sing N N 380 LYS N H2 sing N N 381 LYS CA C sing N N 382 LYS CA CB sing N N 383 LYS CA HA sing N N 384 LYS C O doub N N 385 LYS C OXT sing N N 386 LYS CB CG sing N N 387 LYS CB HB2 sing N N 388 LYS CB HB3 sing N N 389 LYS CG CD sing N N 390 LYS CG HG2 sing N N 391 LYS CG HG3 sing N N 392 LYS CD CE sing N N 393 LYS CD HD2 sing N N 394 LYS CD HD3 sing N N 395 LYS CE NZ sing N N 396 LYS CE HE2 sing N N 397 LYS CE HE3 sing N N 398 LYS NZ HZ1 sing N N 399 LYS NZ HZ2 sing N N 400 LYS NZ HZ3 sing N N 401 LYS OXT HXT sing N N 402 MET N CA sing N N 403 MET N H sing N N 404 MET N H2 sing N N 405 MET CA C sing N N 406 MET CA CB sing N N 407 MET CA HA sing N N 408 MET C O doub N N 409 MET C OXT sing N N 410 MET CB CG sing N N 411 MET CB HB2 sing N N 412 MET CB HB3 sing N N 413 MET CG SD sing N N 414 MET CG HG2 sing N N 415 MET CG HG3 sing N N 416 MET SD CE sing N N 417 MET CE HE1 sing N N 418 MET CE HE2 sing N N 419 MET CE HE3 sing N N 420 MET OXT HXT sing N N 421 PHE N CA sing N N 422 PHE N H sing N N 423 PHE N H2 sing N N 424 PHE CA C sing N N 425 PHE CA CB sing N N 426 PHE CA HA sing N N 427 PHE C O doub N N 428 PHE C OXT sing N N 429 PHE CB CG sing N N 430 PHE CB HB2 sing N N 431 PHE CB HB3 sing N N 432 PHE CG CD1 doub Y N 433 PHE CG CD2 sing Y N 434 PHE CD1 CE1 sing Y N 435 PHE CD1 HD1 sing N N 436 PHE CD2 CE2 doub Y N 437 PHE CD2 HD2 sing N N 438 PHE CE1 CZ doub Y N 439 PHE CE1 HE1 sing N N 440 PHE CE2 CZ sing Y N 441 PHE CE2 HE2 sing N N 442 PHE CZ HZ sing N N 443 PHE OXT HXT sing N N 444 PRO N CA sing N N 445 PRO N CD sing N N 446 PRO N H sing N N 447 PRO CA C sing N N 448 PRO CA CB sing N N 449 PRO CA HA sing N N 450 PRO C O doub N N 451 PRO C OXT sing N N 452 PRO CB CG sing N N 453 PRO CB HB2 sing N N 454 PRO CB HB3 sing N N 455 PRO CG CD sing N N 456 PRO CG HG2 sing N N 457 PRO CG HG3 sing N N 458 PRO CD HD2 sing N N 459 PRO CD HD3 sing N N 460 PRO OXT HXT sing N N 461 SER N CA sing N N 462 SER N H sing N N 463 SER N H2 sing N N 464 SER CA C sing N N 465 SER CA CB sing N N 466 SER CA HA sing N N 467 SER C O doub N N 468 SER C OXT sing N N 469 SER CB OG sing N N 470 SER CB HB2 sing N N 471 SER CB HB3 sing N N 472 SER OG HG sing N N 473 SER OXT HXT sing N N 474 THR N CA sing N N 475 THR N H sing N N 476 THR N H2 sing N N 477 THR CA C sing N N 478 THR CA CB sing N N 479 THR CA HA sing N N 480 THR C O doub N N 481 THR C OXT sing N N 482 THR CB OG1 sing N N 483 THR CB CG2 sing N N 484 THR CB HB sing N N 485 THR OG1 HG1 sing N N 486 THR CG2 HG21 sing N N 487 THR CG2 HG22 sing N N 488 THR CG2 HG23 sing N N 489 THR OXT HXT sing N N 490 TRP N CA sing N N 491 TRP N H sing N N 492 TRP N H2 sing N N 493 TRP CA C sing N N 494 TRP CA CB sing N N 495 TRP CA HA sing N N 496 TRP C O doub N N 497 TRP C OXT sing N N 498 TRP CB CG sing N N 499 TRP CB HB2 sing N N 500 TRP CB HB3 sing N N 501 TRP CG CD1 doub Y N 502 TRP CG CD2 sing Y N 503 TRP CD1 NE1 sing Y N 504 TRP CD1 HD1 sing N N 505 TRP CD2 CE2 doub Y N 506 TRP CD2 CE3 sing Y N 507 TRP NE1 CE2 sing Y N 508 TRP NE1 HE1 sing N N 509 TRP CE2 CZ2 sing Y N 510 TRP CE3 CZ3 doub Y N 511 TRP CE3 HE3 sing N N 512 TRP CZ2 CH2 doub Y N 513 TRP CZ2 HZ2 sing N N 514 TRP CZ3 CH2 sing Y N 515 TRP CZ3 HZ3 sing N N 516 TRP CH2 HH2 sing N N 517 TRP OXT HXT sing N N 518 TYR N CA sing N N 519 TYR N H sing N N 520 TYR N H2 sing N N 521 TYR CA C sing N N 522 TYR CA CB sing N N 523 TYR CA HA sing N N 524 TYR C O doub N N 525 TYR C OXT sing N N 526 TYR CB CG sing N N 527 TYR CB HB2 sing N N 528 TYR CB HB3 sing N N 529 TYR CG CD1 doub Y N 530 TYR CG CD2 sing Y N 531 TYR CD1 CE1 sing Y N 532 TYR CD1 HD1 sing N N 533 TYR CD2 CE2 doub Y N 534 TYR CD2 HD2 sing N N 535 TYR CE1 CZ doub Y N 536 TYR CE1 HE1 sing N N 537 TYR CE2 CZ sing Y N 538 TYR CE2 HE2 sing N N 539 TYR CZ OH sing N N 540 TYR OH HH sing N N 541 TYR OXT HXT sing N N 542 VAL N CA sing N N 543 VAL N H sing N N 544 VAL N H2 sing N N 545 VAL CA C sing N N 546 VAL CA CB sing N N 547 VAL CA HA sing N N 548 VAL C O doub N N 549 VAL C OXT sing N N 550 VAL CB CG1 sing N N 551 VAL CB CG2 sing N N 552 VAL CB HB sing N N 553 VAL CG1 HG11 sing N N 554 VAL CG1 HG12 sing N N 555 VAL CG1 HG13 sing N N 556 VAL CG2 HG21 sing N N 557 VAL CG2 HG22 sing N N 558 VAL CG2 HG23 sing N N 559 VAL OXT HXT sing N N 560 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4HDU 'double helix' 4HDU 'b-form double helix' 4HDU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 13 1_555 -0.137 -0.058 0.243 -3.409 -6.318 -1.765 1 B_DC2:DG26_C B 2 ? C 26 ? 19 1 1 B DC 3 1_555 C DG 12 1_555 0.272 -0.169 0.850 -15.283 -1.107 -0.449 2 B_DC3:DG25_C B 3 ? C 25 ? 19 1 1 B DA 4 1_555 C DT 11 1_555 -0.473 -0.213 0.153 -1.836 -8.772 -0.475 3 B_DA4:DT24_C B 4 ? C 24 ? 20 1 1 B DT 5 1_555 C DA 10 1_555 0.207 -0.187 -0.022 2.493 -5.669 0.792 4 B_DT5:DA23_C B 5 ? C 23 ? 20 1 1 B DG 6 1_555 C DC 9 1_555 -0.754 -0.316 -0.444 -0.105 0.206 -1.106 5 B_DG6:DC22_C B 6 ? C 22 ? 19 1 1 B DC 8 1_555 C DG 7 1_555 -0.069 -0.096 -0.011 -13.979 -5.591 -0.923 6 B_DC8:DG20_C B 8 ? C 20 ? 19 1 1 B DT 9 1_555 C DA 6 1_555 -0.236 -0.127 0.262 -2.022 -3.891 1.452 7 B_DT9:DA19_C B 9 ? C 19 ? 20 1 1 B DA 10 1_555 C DT 5 1_555 1.262 -0.240 0.275 11.544 -10.705 -2.599 8 B_DA10:DT18_C B 10 ? C 18 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.542 -0.201 0.210 4.249 -13.171 -0.845 9 B_DG11:DC17_C B 11 ? C 17 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 -0.557 -0.170 0.307 -3.029 -4.608 5.153 10 B_DT12:DA16_C B 12 ? C 16 ? 20 1 1 B DA 13 1_555 C DT 2 1_555 0.036 -0.137 0.174 1.374 -5.915 0.000 11 B_DA13:DT15_C B 13 ? C 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 13 1_555 B DC 3 1_555 C DG 12 1_555 0.682 -0.484 3.664 -3.206 1.403 39.162 -0.905 -1.437 3.580 2.089 4.772 39.312 1 BB_DC2DC3:DG25DG26_CC B 2 ? C 26 ? B 3 ? C 25 ? 1 B DC 3 1_555 C DG 12 1_555 B DA 4 1_555 C DT 11 1_555 -0.692 -0.397 2.829 3.281 6.701 26.355 -2.231 2.145 2.549 14.334 -7.019 27.373 2 BB_DC3DA4:DT24DG25_CC B 3 ? C 25 ? B 4 ? C 24 ? 1 B DA 4 1_555 C DT 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.081 -0.870 3.190 0.007 1.673 36.147 -1.629 0.131 3.148 2.694 -0.012 36.185 3 BB_DA4DT5:DA23DT24_CC B 4 ? C 24 ? B 5 ? C 23 ? 1 B DT 5 1_555 C DA 10 1_555 B DG 6 1_555 C DC 9 1_555 0.567 0.376 3.495 4.111 7.173 28.913 -0.887 -0.169 3.530 14.009 -8.028 30.048 4 BB_DT5DG6:DC22DA23_CC B 5 ? C 23 ? B 6 ? C 22 ? 1 B DG 6 1_555 C DC 9 1_555 B DC 8 1_555 C DG 7 1_555 -0.233 -1.827 7.050 -8.247 32.798 50.983 -5.102 -0.596 5.125 34.173 8.593 60.548 5 BB_DG6DC8:DG20DC22_CC B 6 ? C 22 ? B 8 ? C 20 ? 1 B DC 8 1_555 C DG 7 1_555 B DT 9 1_555 C DA 6 1_555 -0.200 -0.662 3.097 -0.868 2.184 28.049 -1.842 0.220 3.042 4.496 1.787 28.146 6 BB_DC8DT9:DA19DG20_CC B 8 ? C 20 ? B 9 ? C 19 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 -0.072 1.112 3.133 -0.561 -4.393 47.095 1.723 0.047 3.024 -5.484 0.700 47.291 7 BB_DT9DA10:DT18DA19_CC B 9 ? C 19 ? B 10 ? C 18 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 0.437 -0.676 3.511 0.840 1.640 25.442 -2.033 -0.733 3.473 3.718 -1.904 25.507 8 BB_DA10DG11:DC17DT18_CC B 10 ? C 18 ? B 11 ? C 17 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 0.567 -0.712 3.390 2.216 -2.585 30.420 -0.811 -0.613 3.468 -4.908 -4.207 30.606 9 BB_DG11DT12:DA16DC17_CC B 11 ? C 17 ? B 12 ? C 16 ? 1 B DT 12 1_555 C DA 3 1_555 B DA 13 1_555 C DT 2 1_555 0.210 -0.992 3.103 3.420 7.385 37.461 -2.367 0.077 2.870 11.335 -5.249 38.304 10 BB_DT12DA13:DT15DA16_CC B 12 ? C 16 ? B 13 ? C 15 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GVA _pdbx_initial_refinement_model.details 'PDB ENTRY 3GVA' #