HEADER FLUORESCENT PROTEIN 03-OCT-12 4HE4 TITLE CRYSTAL STRUCTURE OF THE YELLOW FLUORESCENT PROTEIN PHIYFP (PHIALIDIUM TITLE 2 SP.) COMPND MOL_ID: 1; COMPND 2 MOLECULE: YELLOW FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHIALIDIUM SP. SL-2003; SOURCE 3 ORGANISM_TAXID: 258839; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS PHIYFP, YELLOW FLUORESCENT PROTEIN, MUTANT VARIANT OF PHIYFP, THR- KEYWDS 2 TYR-GLY CHROMOPHORE, BETA-BARREL, BIOMARKER, THR-TYR-GLY BICYCLIC KEYWDS 3 CHROMOPHORE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.PLETNEVA,S.PLETNEV,V.Z.PLETNEV REVDAT 4 06-DEC-23 4HE4 1 REMARK REVDAT 3 20-SEP-23 4HE4 1 SEQADV LINK REVDAT 2 19-JUN-13 4HE4 1 JRNL REVDAT 1 29-MAY-13 4HE4 0 JRNL AUTH N.V.PLETNEVA,V.Z.PLETNEV,E.SOUSLOVA,D.M.CHUDAKOV,S.LUKYANOV, JRNL AUTH 2 V.I.MARTYNOV,S.ARHIPOVA,I.ARTEMYEV,A.WLODAWER,Z.DAUTER, JRNL AUTH 3 S.PLETNEV JRNL TITL YELLOW FLUORESCENT PROTEIN PHIYFPV (PHIALIDIUM): STRUCTURE JRNL TITL 2 AND STRUCTURE-BASED MUTAGENESIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1005 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23695245 JRNL DOI 10.1107/S0907444913004034 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3763 ; 0.026 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5093 ; 1.872 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 7.321 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;39.072 ;24.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;16.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.616 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2914 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2291 ; 1.121 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3691 ; 1.983 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 3.090 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1401 ; 4.623 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1QY3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M NAH2PO4 X 2H2O, 16% PEG 3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.43500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.69601 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.84333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.43500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.69601 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.84333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.43500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.69601 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.84333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.43500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.69601 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.84333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.43500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.69601 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.84333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.43500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.69601 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.84333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.39202 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 161.68667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 59.39202 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 161.68667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 59.39202 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 161.68667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 59.39202 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 161.68667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 59.39202 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 161.68667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 59.39202 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 161.68667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 235 REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 GLY A 238 REMARK 465 SER A 239 REMARK 465 GLY A 240 REMARK 465 ASP A 241 REMARK 465 THR A 242 REMARK 465 SER A 243 REMARK 465 LEU A 244 REMARK 465 ILE A 245 REMARK 465 SER A 246 REMARK 465 PHE B 235 REMARK 465 ASP B 236 REMARK 465 ALA B 237 REMARK 465 GLY B 238 REMARK 465 SER B 239 REMARK 465 GLY B 240 REMARK 465 ASP B 241 REMARK 465 THR B 242 REMARK 465 SER B 243 REMARK 465 LEU B 244 REMARK 465 ILE B 245 REMARK 465 SER B 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 -158.66 -147.17 REMARK 500 ASP B 23 71.43 36.04 REMARK 500 GLU B 99 111.78 -36.06 REMARK 500 ASP B 101 -154.42 -150.76 REMARK 500 LYS B 137 82.29 47.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OGR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YELLOW FLUORESCENT PROTEIN FROM ZOANTHUS SP. REMARK 900 AT 1.8A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT THE REPORTED PROTEIN IS A MUTANT OF OF THE WILD REMARK 999 TYPE PHIYFP. NCBI DATABASE: ACCESSION CODE AY485333.1. THE COMPLETE REMARK 999 SEQEUNCE IS REMARK 999 SSGALLFHGKIPYVVEMEGNVDGHTFSIRGKGYGDASVGKVDAQFICTTGDVPVPWSTLV TTLTYGA REMARK 999 QCFAKYGPELKDFYKSCMPEGYVQERTITFEGDGVFKTRAEVTFENGSVYNRV KLNGQGFKKDGHVL REMARK 999 REMARK 999 GKNLEFNFTPHCLYIWGDQANHGLKSAFKIMHEITGSKEDFIVADH TQMNTPIGGGPVHVPEYHHIT DBREF 4HE4 A 2 233 UNP Q6RYS7 Q6RYS7_9CNID 2 233 DBREF 4HE4 B 2 233 UNP Q6RYS7 Q6RYS7_9CNID 2 233 SEQADV 4HE4 GLY A 1 UNP Q6RYS7 EXPRESSION TAG SEQADV 4HE4 CRO A 65 UNP Q6RYS7 THR 65 CHROMOPHORE SEQADV 4HE4 CRO A 65 UNP Q6RYS7 TYR 66 CHROMOPHORE SEQADV 4HE4 CRO A 65 UNP Q6RYS7 GLY 67 CHROMOPHORE SEQADV 4HE4 ASP A 88 UNP Q6RYS7 GLU 88 SEE REMARK 999 SEQADV 4HE4 ASN A 103 UNP Q6RYS7 VAL 103 SEE REMARK 999 SEQADV 4HE4 CYS A 166 UNP Q6RYS7 MET 166 SEE REMARK 999 SEQADV 4HE4 GLY A 174 UNP Q6RYS7 GLU 174 SEE REMARK 999 SEQADV 4HE4 MET A 201 UNP Q6RYS7 ILE 201 SEE REMARK 999 SEQADV 4HE4 SER A 202 UNP Q6RYS7 THR 202 SEE REMARK 999 SEQADV 4HE4 LYS A 206 UNP Q6RYS7 THR 206 SEE REMARK 999 SEQADV 4HE4 LYS A 221 UNP Q6RYS7 VAL 221 SEE REMARK 999 SEQADV 4HE4 ASP A 234 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 PHE A 235 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ASP A 236 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ALA A 237 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 GLY A 238 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 SER A 239 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 GLY A 240 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ASP A 241 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 THR A 242 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 SER A 243 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 LEU A 244 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ILE A 245 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 SER A 246 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 GLY B 1 UNP Q6RYS7 EXPRESSION TAG SEQADV 4HE4 CRO B 65 UNP Q6RYS7 THR 65 CHROMOPHORE SEQADV 4HE4 CRO B 65 UNP Q6RYS7 TYR 66 CHROMOPHORE SEQADV 4HE4 CRO B 65 UNP Q6RYS7 GLY 67 CHROMOPHORE SEQADV 4HE4 ASP B 88 UNP Q6RYS7 GLU 88 SEE REMARK 999 SEQADV 4HE4 ASN B 103 UNP Q6RYS7 VAL 103 SEE REMARK 999 SEQADV 4HE4 CYS B 166 UNP Q6RYS7 MET 166 SEE REMARK 999 SEQADV 4HE4 GLY B 174 UNP Q6RYS7 GLU 174 SEE REMARK 999 SEQADV 4HE4 MET B 201 UNP Q6RYS7 ILE 201 SEE REMARK 999 SEQADV 4HE4 SER B 202 UNP Q6RYS7 THR 202 SEE REMARK 999 SEQADV 4HE4 LYS B 206 UNP Q6RYS7 THR 206 SEE REMARK 999 SEQADV 4HE4 LYS B 221 UNP Q6RYS7 VAL 221 SEE REMARK 999 SEQADV 4HE4 ASP B 234 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 PHE B 235 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ASP B 236 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ALA B 237 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 GLY B 238 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 SER B 239 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 GLY B 240 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ASP B 241 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 THR B 242 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 SER B 243 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 LEU B 244 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 ILE B 245 UNP Q6RYS7 SEE REMARK 999 SEQADV 4HE4 SER B 246 UNP Q6RYS7 SEE REMARK 999 SEQRES 1 A 244 GLY SER SER GLY ALA LEU LEU PHE HIS GLY LYS ILE PRO SEQRES 2 A 244 TYR VAL VAL GLU MET GLU GLY ASN VAL ASP GLY HIS THR SEQRES 3 A 244 PHE SER ILE ARG GLY LYS GLY TYR GLY ASP ALA SER VAL SEQRES 4 A 244 GLY LYS VAL ASP ALA GLN PHE ILE CYS THR THR GLY ASP SEQRES 5 A 244 VAL PRO VAL PRO TRP SER THR LEU VAL THR THR LEU CRO SEQRES 6 A 244 ALA GLN CYS PHE ALA LYS TYR GLY PRO GLU LEU LYS ASP SEQRES 7 A 244 PHE TYR LYS SER CYS MET PRO ASP GLY TYR VAL GLN GLU SEQRES 8 A 244 ARG THR ILE THR PHE GLU GLY ASP GLY ASN PHE LYS THR SEQRES 9 A 244 ARG ALA GLU VAL THR PHE GLU ASN GLY SER VAL TYR ASN SEQRES 10 A 244 ARG VAL LYS LEU ASN GLY GLN GLY PHE LYS LYS ASP GLY SEQRES 11 A 244 HIS VAL LEU GLY LYS ASN LEU GLU PHE ASN PHE THR PRO SEQRES 12 A 244 HIS CYS LEU TYR ILE TRP GLY ASP GLN ALA ASN HIS GLY SEQRES 13 A 244 LEU LYS SER ALA PHE LYS ILE CYS HIS GLU ILE THR GLY SEQRES 14 A 244 SER LYS GLY ASP PHE ILE VAL ALA ASP HIS THR GLN MET SEQRES 15 A 244 ASN THR PRO ILE GLY GLY GLY PRO VAL HIS VAL PRO GLU SEQRES 16 A 244 TYR HIS HIS MET SER TYR HIS VAL LYS LEU SER LYS ASP SEQRES 17 A 244 VAL THR ASP HIS ARG ASP ASN MET SER LEU LYS GLU THR SEQRES 18 A 244 VAL ARG ALA VAL ASP CYS ARG LYS THR TYR ASP PHE ASP SEQRES 19 A 244 ALA GLY SER GLY ASP THR SER LEU ILE SER SEQRES 1 B 244 GLY SER SER GLY ALA LEU LEU PHE HIS GLY LYS ILE PRO SEQRES 2 B 244 TYR VAL VAL GLU MET GLU GLY ASN VAL ASP GLY HIS THR SEQRES 3 B 244 PHE SER ILE ARG GLY LYS GLY TYR GLY ASP ALA SER VAL SEQRES 4 B 244 GLY LYS VAL ASP ALA GLN PHE ILE CYS THR THR GLY ASP SEQRES 5 B 244 VAL PRO VAL PRO TRP SER THR LEU VAL THR THR LEU CRO SEQRES 6 B 244 ALA GLN CYS PHE ALA LYS TYR GLY PRO GLU LEU LYS ASP SEQRES 7 B 244 PHE TYR LYS SER CYS MET PRO ASP GLY TYR VAL GLN GLU SEQRES 8 B 244 ARG THR ILE THR PHE GLU GLY ASP GLY ASN PHE LYS THR SEQRES 9 B 244 ARG ALA GLU VAL THR PHE GLU ASN GLY SER VAL TYR ASN SEQRES 10 B 244 ARG VAL LYS LEU ASN GLY GLN GLY PHE LYS LYS ASP GLY SEQRES 11 B 244 HIS VAL LEU GLY LYS ASN LEU GLU PHE ASN PHE THR PRO SEQRES 12 B 244 HIS CYS LEU TYR ILE TRP GLY ASP GLN ALA ASN HIS GLY SEQRES 13 B 244 LEU LYS SER ALA PHE LYS ILE CYS HIS GLU ILE THR GLY SEQRES 14 B 244 SER LYS GLY ASP PHE ILE VAL ALA ASP HIS THR GLN MET SEQRES 15 B 244 ASN THR PRO ILE GLY GLY GLY PRO VAL HIS VAL PRO GLU SEQRES 16 B 244 TYR HIS HIS MET SER TYR HIS VAL LYS LEU SER LYS ASP SEQRES 17 B 244 VAL THR ASP HIS ARG ASP ASN MET SER LEU LYS GLU THR SEQRES 18 B 244 VAL ARG ALA VAL ASP CYS ARG LYS THR TYR ASP PHE ASP SEQRES 19 B 244 ALA GLY SER GLY ASP THR SER LEU ILE SER MODRES 4HE4 CRO A 65 GLY MODRES 4HE4 CRO A 65 TYR MODRES 4HE4 CRO A 65 GLY MODRES 4HE4 CRO B 65 GLY MODRES 4HE4 CRO B 65 TYR MODRES 4HE4 CRO B 65 GLY HET CRO A 65 22 HET CRO B 65 22 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 HOH *181(H2 O) HELIX 1 1 SER A 3 HIS A 9 5 7 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 ALA A 68 ALA A 72 5 5 HELIX 4 4 ASP A 80 CYS A 85 1 6 HELIX 5 5 GLN A 154 HIS A 157 5 4 HELIX 6 6 ASP A 228 TYR A 233 1 6 HELIX 7 7 SER B 2 HIS B 9 5 8 HELIX 8 8 PRO B 56 VAL B 61 5 6 HELIX 9 9 ALA B 68 ALA B 72 5 5 HELIX 10 10 ASP B 80 CYS B 85 1 6 HELIX 11 11 GLN B 154 HIS B 157 5 4 HELIX 12 12 ASP B 228 TYR B 233 1 6 SHEET 1 A12 ILE A 12 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 ASN A 217 VAL A 227 -1 O MET A 218 N PHE A 46 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 208 O SER A 219 SHEET 6 A12 HIS A 146 ASP A 153 -1 N HIS A 146 O TYR A 203 SHEET 7 A12 GLY A 158 GLU A 168 -1 O LYS A 160 N TRP A 151 SHEET 8 A12 PHE A 176 PRO A 187 -1 O ALA A 179 N ILE A 165 SHEET 9 A12 TYR A 90 PHE A 98 -1 N GLU A 93 O MET A 184 SHEET 10 A12 ASN A 103 GLU A 113 -1 O VAL A 110 N TYR A 90 SHEET 11 A12 SER A 116 GLN A 126 -1 O ASN A 124 N LYS A 105 SHEET 12 A12 ILE A 12 VAL A 22 1 N ASN A 21 O GLY A 125 SHEET 1 B12 ILE B 12 VAL B 22 0 SHEET 2 B12 HIS B 25 ASP B 36 -1 O PHE B 27 N GLY B 20 SHEET 3 B12 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 B12 ASN B 217 VAL B 227 -1 O GLU B 222 N VAL B 42 SHEET 5 B12 HIS B 199 SER B 208 -1 N HIS B 200 O VAL B 227 SHEET 6 B12 HIS B 146 ASP B 153 -1 N LEU B 148 O MET B 201 SHEET 7 B12 GLY B 158 GLU B 168 -1 O LYS B 160 N TRP B 151 SHEET 8 B12 PHE B 176 PRO B 187 -1 O ALA B 179 N ILE B 165 SHEET 9 B12 TYR B 90 PHE B 98 -1 N VAL B 91 O THR B 186 SHEET 10 B12 ASN B 103 GLU B 113 -1 O PHE B 104 N ILE B 96 SHEET 11 B12 SER B 116 GLN B 126 -1 O LYS B 122 N ARG B 107 SHEET 12 B12 ILE B 12 VAL B 22 1 N GLU B 17 O ASN B 119 LINK C LEU A 64 N1 CRO A 65 1555 1555 1.34 LINK C3 CRO A 65 N ALA A 68 1555 1555 1.35 LINK C LEU B 64 N1 CRO B 65 1555 1555 1.34 LINK C3 CRO B 65 N ALA B 68 1555 1555 1.34 CISPEP 1 MET A 86 PRO A 87 0 11.12 CISPEP 2 MET B 86 PRO B 87 0 9.88 CRYST1 102.870 102.870 242.530 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009721 0.005612 0.000000 0.00000 SCALE2 0.000000 0.011225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004123 0.00000