HEADER VIRAL PROTEIN 04-OCT-12 4HEP TITLE COMPLEX OF LACTOCOCCAL PHAGE TP901-1 WITH A LLAMA VHH (VHH17) BINDER TITLE 2 (NANOBODY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BPP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BASEPLATE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VHH17 DOMAIN; COMPND 8 CHAIN: G; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS PHAGE TP901-1; SOURCE 3 ORGANISM_TAXID: 35345; SOURCE 4 GENE: BPP, ORF49; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETG20A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 12 ORGANISM_COMMON: LLAMA; SOURCE 13 ORGANISM_TAXID: 9844; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA-BETA, PHAGE RECEPTOR BINDING PROTEIN, LLAMA GLAMA VHH DOMAIN, KEYWDS 2 VIRAL PROTEIN, CELL ADHESION-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.DESMYTER,S.SPINELLI,C.FARENC,S.BLANGY,C.BEBEACUA,D.VAN SINDEREN, AUTHOR 2 J.MAHONY,C.CAMBILLAU REVDAT 4 08-NOV-23 4HEP 1 REMARK REVDAT 3 15-NOV-17 4HEP 1 REMARK REVDAT 2 31-JUL-13 4HEP 1 JRNL REVDAT 1 20-MAR-13 4HEP 0 JRNL AUTH A.DESMYTER,C.FARENC,J.MAHONY,S.SPINELLI,C.BEBEACUA,S.BLANGY, JRNL AUTH 2 D.VEESLER,D.VAN SINDEREN,C.CAMBILLAU JRNL TITL VIRAL INFECTION MODULATION AND NEUTRALIZATION BY CAMELID JRNL TITL 2 NANOBODIES JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1371 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23530214 JRNL DOI 10.1073/PNAS.1301336110 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1659 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2983 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2266 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2873 REMARK 3 BIN R VALUE (WORKING SET) : 0.2268 REMARK 3 BIN FREE R VALUE : 0.2213 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.69 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 110 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18570 REMARK 3 B22 (A**2) : 0.18570 REMARK 3 B33 (A**2) : -0.37140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.235 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.105 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.092 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.098 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.088 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2219 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3007 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 732 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 45 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 332 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2219 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 287 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2695 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - A|17} REMARK 3 ORIGIN FOR THE GROUP (A): -0.2384 -34.1141 -53.2267 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0050 REMARK 3 T33: -0.0476 T12: -0.0124 REMARK 3 T13: -0.0195 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: -0.1562 L22: 0.3889 REMARK 3 L33: 0.0870 L12: 0.0711 REMARK 3 L13: 0.0056 L23: -0.0925 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0055 S13: -0.0029 REMARK 3 S21: -0.0042 S22: 0.0050 S23: 0.0012 REMARK 3 S31: -0.0018 S32: -0.0043 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|18 - A|53} REMARK 3 ORIGIN FOR THE GROUP (A): 2.3045 -40.3695 -30.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0228 REMARK 3 T33: -0.0666 T12: 0.0065 REMARK 3 T13: -0.0007 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.4315 L22: 0.7754 REMARK 3 L33: 0.2834 L12: 0.0044 REMARK 3 L13: 0.3499 L23: 0.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0008 S13: 0.0036 REMARK 3 S21: 0.0006 S22: -0.0067 S23: -0.0203 REMARK 3 S31: 0.0010 S32: 0.0029 S33: 0.0037 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|54 - A|78} REMARK 3 ORIGIN FOR THE GROUP (A): 2.9861 -32.6366 3.3469 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: -0.0260 REMARK 3 T33: -0.0118 T12: -0.0170 REMARK 3 T13: -0.0632 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.0222 L22: -0.0120 REMARK 3 L33: 0.3188 L12: -0.0040 REMARK 3 L13: 0.1175 L23: -0.0777 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0317 S13: 0.0459 REMARK 3 S21: -0.0087 S22: -0.0152 S23: -0.0154 REMARK 3 S31: -0.0100 S32: 0.0117 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|79 - A|116} REMARK 3 ORIGIN FOR THE GROUP (A): -2.7911 -28.7427 13.3016 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: -0.0331 REMARK 3 T33: 0.0089 T12: 0.0099 REMARK 3 T13: -0.0697 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.2774 L22: 0.8449 REMARK 3 L33: 0.3463 L12: -0.1065 REMARK 3 L13: -0.0764 L23: -0.1409 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0241 S13: 0.0620 REMARK 3 S21: -0.0082 S22: -0.0012 S23: -0.0126 REMARK 3 S31: -0.0200 S32: -0.0210 S33: 0.0126 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|117 - A|143} REMARK 3 ORIGIN FOR THE GROUP (A): -4.0642 -34.9986 19.7390 REMARK 3 T TENSOR REMARK 3 T11: -0.0053 T22: -0.0092 REMARK 3 T33: 0.0114 T12: 0.0100 REMARK 3 T13: -0.0464 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.4526 L22: 0.2816 REMARK 3 L33: 0.3713 L12: 0.1901 REMARK 3 L13: -0.4663 L23: -0.2133 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0016 S13: -0.0037 REMARK 3 S21: 0.0037 S22: -0.0250 S23: 0.0134 REMARK 3 S31: -0.0130 S32: -0.0156 S33: 0.0195 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|144 - A|163} REMARK 3 ORIGIN FOR THE GROUP (A): -1.6123 -33.4357 19.0247 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: -0.0078 REMARK 3 T33: 0.0022 T12: -0.0007 REMARK 3 T13: -0.0657 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.2203 L22: 0.7873 REMARK 3 L33: 0.0679 L12: -0.2493 REMARK 3 L13: 0.1015 L23: 0.0770 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.0053 S13: 0.0338 REMARK 3 S21: 0.0061 S22: -0.0007 S23: 0.0005 REMARK 3 S31: -0.0099 S32: 0.0001 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {G|2 - G|20} REMARK 3 ORIGIN FOR THE GROUP (A): -7.7695 -12.1281 -36.0594 REMARK 3 T TENSOR REMARK 3 T11: -0.0312 T22: 0.0064 REMARK 3 T33: 0.0291 T12: 0.0164 REMARK 3 T13: 0.0076 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: -0.0126 L22: 0.3285 REMARK 3 L33: 0.0000 L12: -0.0839 REMARK 3 L13: 0.0397 L23: -0.0351 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0040 S13: 0.0151 REMARK 3 S21: 0.0005 S22: 0.0131 S23: -0.0107 REMARK 3 S31: -0.0055 S32: -0.0093 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {G|21 - G|40} REMARK 3 ORIGIN FOR THE GROUP (A): 4.4389 -18.9992 -32.8149 REMARK 3 T TENSOR REMARK 3 T11: -0.0586 T22: 0.0126 REMARK 3 T33: 0.0521 T12: -0.0137 REMARK 3 T13: -0.0326 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.1828 L22: 0.4505 REMARK 3 L33: 0.2533 L12: 0.1792 REMARK 3 L13: 0.1961 L23: -0.2846 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.0063 S13: 0.0143 REMARK 3 S21: 0.0119 S22: 0.0114 S23: 0.0010 REMARK 3 S31: 0.0005 S32: 0.0012 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {G|41 - G|60} REMARK 3 ORIGIN FOR THE GROUP (A): 0.6423 -24.2640 -38.6946 REMARK 3 T TENSOR REMARK 3 T11: -0.0334 T22: 0.0136 REMARK 3 T33: 0.0305 T12: -0.0218 REMARK 3 T13: 0.0311 T23: 0.0850 REMARK 3 L TENSOR REMARK 3 L11: 0.2351 L22: 0.8578 REMARK 3 L33: 0.3688 L12: -0.3709 REMARK 3 L13: 0.2986 L23: -0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0036 S13: 0.0076 REMARK 3 S21: 0.0053 S22: -0.0003 S23: -0.0019 REMARK 3 S31: 0.0058 S32: 0.0011 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {G|61 - G|80} REMARK 3 ORIGIN FOR THE GROUP (A): 0.7947 -15.6364 -41.8790 REMARK 3 T TENSOR REMARK 3 T11: -0.0320 T22: 0.0231 REMARK 3 T33: 0.0178 T12: -0.0009 REMARK 3 T13: 0.0104 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.3497 L22: -0.1219 REMARK 3 L33: 0.1606 L12: -0.1238 REMARK 3 L13: -0.1855 L23: -0.0273 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0067 S13: 0.0059 REMARK 3 S21: -0.0032 S22: -0.0031 S23: -0.0102 REMARK 3 S31: -0.0054 S32: -0.0058 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: {G|81 - G|100} REMARK 3 ORIGIN FOR THE GROUP (A): -7.4990 -19.4564 -38.4096 REMARK 3 T TENSOR REMARK 3 T11: -0.0712 T22: 0.0315 REMARK 3 T33: 0.0283 T12: 0.0097 REMARK 3 T13: -0.0171 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 0.3183 L22: 0.7517 REMARK 3 L33: 0.1203 L12: -0.2539 REMARK 3 L13: 0.0986 L23: 0.1954 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0120 S13: 0.0070 REMARK 3 S21: -0.0094 S22: 0.0111 S23: -0.0099 REMARK 3 S31: 0.0007 S32: -0.0131 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: {G|101 - G|115} REMARK 3 ORIGIN FOR THE GROUP (A): 7.1935 -30.8362 -37.6732 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: 0.0270 REMARK 3 T33: -0.0205 T12: -0.0001 REMARK 3 T13: 0.0183 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.3888 L22: -0.0435 REMARK 3 L33: 0.0231 L12: -0.0171 REMARK 3 L13: 0.0411 L23: -0.0536 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0006 S13: 0.0112 REMARK 3 S21: -0.0014 S22: 0.0056 S23: -0.0096 REMARK 3 S31: 0.0008 S32: 0.0004 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: {G|116 - G|131} REMARK 3 ORIGIN FOR THE GROUP (A): -5.5721 -20.3207 -30.9355 REMARK 3 T TENSOR REMARK 3 T11: -0.0438 T22: 0.0260 REMARK 3 T33: 0.0164 T12: 0.0155 REMARK 3 T13: -0.0349 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1090 L22: 0.5146 REMARK 3 L33: 0.2136 L12: 0.1451 REMARK 3 L13: -0.2817 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0020 S13: 0.0124 REMARK 3 S21: 0.0117 S22: 0.0223 S23: -0.0050 REMARK 3 S31: 0.0112 S32: -0.0043 S33: -0.0147 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F0C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M MES, REMARK 280 6MG/ML PROTEIN COMPLEX, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 37.19000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.47166 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 125.29000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 37.19000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 21.47166 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 125.29000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 37.19000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 21.47166 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 125.29000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 37.19000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 21.47166 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 125.29000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 37.19000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 21.47166 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 125.29000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 37.19000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 21.47166 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 125.29000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.94331 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 250.58000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 42.94331 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 250.58000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 42.94331 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 250.58000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 42.94331 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 250.58000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 42.94331 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 250.58000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 42.94331 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 250.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -37.19000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -64.41497 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 37.19000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -64.41497 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP G 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP G 62 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO G 41 C - N - CD ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE G 29 -32.18 102.53 REMARK 500 VAL G 48 -60.71 -108.02 REMARK 500 SER G 54 -75.39 -93.61 REMARK 500 ALA G 75 -53.29 163.68 REMARK 500 ALA G 92 171.77 179.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA G 40 PRO G 41 149.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EJC RELATED DB: PDB REMARK 900 RELATED ID: 3HG0 RELATED DB: PDB REMARK 900 RELATED ID: 3F0C RELATED DB: PDB REMARK 900 RELATED ID: 4HEM RELATED DB: PDB REMARK 900 RELATED ID: 4IOS RELATED DB: PDB DBREF 4HEP A 1 163 UNP Q9G096 Q9G096_9CAUD 1 163 DBREF 4HEP G 1 131 PDB 4HEP 4HEP 1 131 SEQRES 1 A 163 MET ALA SER ILE LYS LYS VAL TYR ARG GLY MET LYS ASN SEQRES 2 A 163 GLY ALA GLU THR ILE ASN ASP ASP LEU GLU ALA ILE ASN SEQRES 3 A 163 SER GLU LEU THR SER GLY GLY ASN VAL VAL HIS LYS THR SEQRES 4 A 163 GLY ASP GLU THR ILE ALA GLY LYS LYS THR PHE THR GLY SEQRES 5 A 163 ASN VAL GLU VAL ASN GLY SER LEU THR LEU PRO THR LYS SEQRES 6 A 163 SER TRP SER GLY GLU LEU GLY GLY GLY ILE ILE LEU SER SEQRES 7 A 163 LEU ARG LYS LYS GLY THR THR VAL GLU TYR SER ILE GLY SEQRES 8 A 163 GLY GLU ILE SER SER SER ILE LEU ALA ASN SER ASN LEU SEQRES 9 A 163 VAL ASN ARG SER VAL PRO ASN GLU PHE CYS PRO ARG ASN SEQRES 10 A 163 ARG CYS SER LEU VAL GLY HIS MET VAL GLY GLY TRP ASN SEQRES 11 A 163 ALA PHE HIS ILE ASP ILE PRO SER SER GLY VAL CYS GLN SEQRES 12 A 163 TRP PHE GLY PRO THR ALA SER SER GLY THR PRO ARG GLY SEQRES 13 A 163 THR GLY THR TYR PRO ILE ASP SEQRES 1 G 131 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 G 131 PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 G 131 PHE SER PHE ASP ASP TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 G 131 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER TYR ILE SER SEQRES 5 G 131 MET SER ASP GLY ARG THR TYR VAL ALA ASP SER VAL THR SEQRES 6 G 131 GLY ARG PHE THR ILE SER SER ASP ASN ALA LYS ASN THR SEQRES 7 G 131 VAL TYR LEU GLN MET ASN SER LEU LYS LEU GLU ASP THR SEQRES 8 G 131 ALA VAL TYR TYR CYS ALA ALA GLY ARG PHE VAL THR PHE SEQRES 9 G 131 GLY SER ALA TRP SER PHE VAL GLY GLY GLY PRO TYR GLY SEQRES 10 G 131 ILE ASP TYR TRP GLY LYS GLY THR LEU VAL THR VAL SER SEQRES 11 G 131 SER HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *325(H2 O) HELIX 1 1 ASN A 13 GLU A 28 1 16 HELIX 2 2 PRO A 110 CYS A 114 5 5 HELIX 3 3 ASP G 62 THR G 65 5 4 HELIX 4 4 LYS G 87 THR G 91 5 5 HELIX 5 5 GLY G 114 ILE G 118 5 5 SHEET 1 A 7 THR A 64 GLY A 72 0 SHEET 2 A 7 ILE A 75 LYS A 82 -1 O LEU A 79 N TRP A 67 SHEET 3 A 7 THR A 85 GLY A 92 -1 O GLY A 91 N ILE A 76 SHEET 4 A 7 PRO A 154 PRO A 161 -1 O GLY A 158 N TYR A 88 SHEET 5 A 7 CYS A 119 MET A 125 -1 N HIS A 124 O ARG A 155 SHEET 6 A 7 ALA A 131 ILE A 136 -1 O ILE A 134 N LEU A 121 SHEET 7 A 7 GLN A 143 TRP A 144 -1 O GLN A 143 N ASP A 135 SHEET 1 B 4 GLN G 3 SER G 7 0 SHEET 2 B 4 LEU G 18 SER G 25 -1 O GLU G 23 N VAL G 5 SHEET 3 B 4 THR G 78 MET G 83 -1 O MET G 83 N LEU G 18 SHEET 4 B 4 PHE G 68 ASP G 73 -1 N SER G 71 O TYR G 80 SHEET 1 C 4 LEU G 11 VAL G 12 0 SHEET 2 C 4 THR G 125 VAL G 129 1 O THR G 128 N VAL G 12 SHEET 3 C 4 ALA G 92 PHE G 104 -1 N TYR G 94 O THR G 125 SHEET 4 C 4 ALA G 107 PHE G 110 -1 O ALA G 107 N PHE G 104 SHEET 1 D 5 THR G 58 VAL G 60 0 SHEET 2 D 5 GLU G 46 SER G 52 -1 N TYR G 50 O TYR G 59 SHEET 3 D 5 TYR G 32 GLN G 39 -1 N TRP G 36 O SER G 49 SHEET 4 D 5 ALA G 92 PHE G 104 -1 O ALA G 97 N GLY G 35 SHEET 5 D 5 TYR G 120 TRP G 121 -1 O TYR G 120 N ALA G 98 SSBOND 1 CYS G 22 CYS G 96 1555 1555 2.03 SITE 1 AC1 5 GLY A 69 GLU A 70 ARG A 107 HOH A 374 SITE 2 AC1 5 HOH A 378 CRYST1 74.380 74.380 375.870 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013444 0.007762 0.000000 0.00000 SCALE2 0.000000 0.015524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002660 0.00000