data_4HFP # _entry.id 4HFP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HFP RCSB RCSB075408 WWPDB D_1000075408 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SHH 'SLOW FORM OF THROMBIN BOUND WITH PPACK' unspecified PDB 4HFY . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HFP _pdbx_database_status.recvd_initial_deposition_date 2012-10-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pozzi, N.' 1 'Chen, Z.' 2 'Zapata, F.' 3 'Lin, W.' 4 'Barranco-Medina, S.' 5 'Pelc, L.A.' 6 'Di Cera, E.' 7 # _citation.id primary _citation.title 'Autoactivation of thrombin precursors.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 11601 _citation.page_last 11610 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23467412 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.451542 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pozzi, N.' 1 primary 'Chen, Z.' 2 primary 'Zapata, F.' 3 primary 'Niu, W.' 4 primary 'Barranco-Medina, S.' 5 primary 'Pelc, L.A.' 6 primary 'Di Cera, E.' 7 # _cell.entry_id 4HFP _cell.length_a 77.229 _cell.length_b 77.229 _cell.length_c 94.875 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HFP _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Prothrombin 3647.075 2 3.4.21.5 S195A ? ? 2 polymer man Prothrombin 29764.219 2 3.4.21.5 ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' 508.634 2 ? ? ? ? 5 water nat water 18.015 66 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II, Activation peptide fragment 1, Activation peptide fragment 2, Thrombin light chain, Thrombin heavy chain' 2 'Coagulation factor II, Activation peptide fragment 1, Activation peptide fragment 2, Thrombin light chain, Thrombin heavy chain' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no EADCGLRPLFEKKSLEDKTERELLESYIDGR EADCGLRPLFEKKSLEDKTERELLESYIDGR A,C ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ALA n 1 3 ASP n 1 4 CYS n 1 5 GLY n 1 6 LEU n 1 7 ARG n 1 8 PRO n 1 9 LEU n 1 10 PHE n 1 11 GLU n 1 12 LYS n 1 13 LYS n 1 14 SER n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 LYS n 1 19 THR n 1 20 GLU n 1 21 ARG n 1 22 GLU n 1 23 LEU n 1 24 LEU n 1 25 GLU n 1 26 SER n 1 27 TYR n 1 28 ILE n 1 29 ASP n 1 30 GLY n 1 31 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 ALA n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? F2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? F2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 EADCGLRPLFEKKSLEDKTERELLESYIDGR 333 ? 2 UNP THRB_HUMAN P00734 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HFP A 1 C 31 ? P00734 333 ? 363 ? 1 15 2 2 4HFP B 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 1 4HFP C 1 C 31 ? P00734 333 ? 363 ? 1 15 4 2 4HFP D 1 ? 259 ? P00734 364 ? 622 ? 16 247 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 4HFP ALA B 205 ? UNP P00734 SER 568 'ENGINEERED MUTATION' 195 1 4 4HFP ALA D 205 ? UNP P00734 SER 568 'ENGINEERED MUTATION' 195 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 15U peptide-like . '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' S-argatroban 'C23 H36 N6 O5 S' 508.634 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4HFP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '100mM Na acetate pH 4.6 and 25% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2012-06-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirror _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4HFP _reflns.observed_criterion_sigma_I -0.2 _reflns.observed_criterion_sigma_F -0.2 _reflns.d_resolution_low 40.42 _reflns.d_resolution_high 2.4 _reflns.number_obs 21611 _reflns.number_all 21851 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.40 2.44 91.5 0.362 ? 2.8 3.1 ? 990 ? ? ? ? 1 1 2.44 2.49 97.7 0.365 ? 3.2 3.8 ? 1069 ? ? ? ? 2 1 2.49 2.53 98.3 0.353 ? 3.4 4.0 ? 1049 ? ? ? ? 3 1 2.53 2.59 98.7 0.341 ? 3.7 4.2 ? 1083 ? ? ? ? 4 1 2.59 2.64 98.6 0.322 ? 4.0 4.3 ? 1064 ? ? ? ? 5 1 2.64 2.70 98.6 0.311 ? 4.3 4.5 ? 1088 ? ? ? ? 6 1 # _refine.entry_id 4HFP _refine.ls_number_reflns_obs 20437 _refine.ls_number_reflns_all 20733 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.42 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 98.57 _refine.ls_R_factor_obs 0.17049 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16700 _refine.ls_R_factor_R_free 0.23805 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1105 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.876 _refine.B_iso_mean 55.751 _refine.aniso_B[1][1] 3.77 _refine.aniso_B[2][2] 3.77 _refine.aniso_B[3][3] -7.54 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1SHH _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.164 _refine.pdbx_overall_ESU_R_Free 0.060 _refine.overall_SU_ML 0.208 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 19.689 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4637 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 4775 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 40.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.006 0.022 ? 4833 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 0.994 1.974 ? 6537 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.169 5.000 ? 569 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.848 23.363 ? 226 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 17.231 15.000 ? 850 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.425 15.000 ? 40 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.066 0.200 ? 677 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.003 0.021 ? 3666 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.141 1.500 ? 2845 ? 'X-RAY DIFFRACTION' r_mcangle_it 0.258 2.000 ? 4587 ? 'X-RAY DIFFRACTION' r_scbond_it 0.401 3.000 ? 1988 ? 'X-RAY DIFFRACTION' r_scangle_it 0.636 4.500 ? 1950 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.399 _refine_ls_shell.d_res_low 2.461 _refine_ls_shell.number_reflns_R_work 1364 _refine_ls_shell.R_factor_R_work 0.189 _refine_ls_shell.percent_reflns_obs 91.30 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1364 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4HFP _struct.title 'Structure of thrombin mutant S195a bound to the active site inhibitor argatroban' _struct.pdbx_descriptor 'Prothrombin (E.C.3.4.21.5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HFP _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'Serine protease, prethrombin-2, autoactivation, hydrolase, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 19 B SER A 26 I THR A 14 SER A 14 1 ? 8 HELX_P HELX_P2 2 PRO B 48 B ASP B 51 E PRO B 60 ASP B 60 5 ? 4 HELX_P HELX_P3 3 ASP B 122 ? LEU B 130 ? ASP B 125 LEU B 130 1 ? 9 HELX_P HELX_P4 4 GLU B 169 ? SER B 176 ? GLU B 164 SER B 171 1 ? 8 HELX_P HELX_P5 5 LEU B 246 ? PHE B 257 ? LEU B 234 PHE B 245 1 ? 12 HELX_P HELX_P6 6 THR C 19 B GLU C 25 H THR C 14 GLU C 14 1 ? 7 HELX_P HELX_P7 7 SER C 26 I ILE C 28 K SER C 14 ILE C 14 5 ? 3 HELX_P HELX_P8 8 ALA D 41 ? CYS D 44 ? ALA D 55 CYS D 58 5 ? 4 HELX_P HELX_P9 9 PRO D 48 B ASP D 51 E PRO D 60 ASP D 60 5 ? 4 HELX_P HELX_P10 10 ASP D 122 ? LEU D 130 ? ASP D 125 LEU D 130 1 ? 9 HELX_P HELX_P11 11 GLU D 169 ? ASP D 175 ? GLU D 164 ASP D 170 1 ? 7 HELX_P HELX_P12 12 LEU D 246 ? PHE D 257 ? LEU D 234 PHE D 245 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 B CYS 119 SG ? ? A CYS 1 B CYS 122 1_555 ? ? ? ? ? ? ? 2.038 ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? B CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? 2.027 ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? B CYS 168 B CYS 182 1_555 ? ? ? ? ? ? ? 2.030 ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? B CYS 191 B CYS 220 1_555 ? ? ? ? ? ? ? 2.045 ? disulf5 disulf ? ? C CYS 4 SG ? ? ? 1_555 D CYS 119 SG ? ? C CYS 1 D CYS 122 1_555 ? ? ? ? ? ? ? 2.033 ? disulf6 disulf ? ? D CYS 28 SG ? ? ? 1_555 D CYS 44 SG ? ? D CYS 42 D CYS 58 1_555 ? ? ? ? ? ? ? 2.029 ? disulf7 disulf ? ? D CYS 173 SG ? ? ? 1_555 D CYS 187 SG ? ? D CYS 168 D CYS 182 1_555 ? ? ? ? ? ? ? 2.037 ? disulf8 disulf ? ? D CYS 201 SG ? ? ? 1_555 D CYS 231 SG ? ? D CYS 191 D CYS 220 1_555 ? ? ? ? ? ? ? 2.040 ? metalc1 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 401 B HOH 529 1_555 ? ? ? ? ? ? ? 2.357 ? metalc2 metalc ? ? D LYS 236 O ? ? ? 1_555 G NA . NA ? ? D LYS 224 D NA 401 1_555 ? ? ? ? ? ? ? 2.387 ? metalc3 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 401 B HOH 516 1_555 ? ? ? ? ? ? ? 2.516 ? metalc4 metalc ? ? B LYS 236 O ? ? ? 1_555 E NA . NA ? ? B LYS 224 B NA 401 1_555 ? ? ? ? ? ? ? 2.588 ? metalc5 metalc ? ? D ARG 233 O ? A ? 1_555 G NA . NA ? ? D ARG 221 D NA 401 1_555 ? ? ? ? ? ? ? 2.628 ? metalc6 metalc ? ? B ARG 233 O ? A ? 1_555 E NA . NA ? ? B ARG 221 B NA 401 1_555 ? ? ? ? ? ? ? 2.882 ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 401 B HOH 509 1_555 ? ? ? ? ? ? ? 3.000 ? metalc8 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 401 B HOH 517 1_555 ? ? ? ? ? ? ? 3.120 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 22 B . A SER 36 B PRO 23 B ? PRO 37 B 1 -2.01 2 SER 22 D . A SER 36 D PRO 23 D ? PRO 37 D 1 -5.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? D ? 7 ? E ? 7 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel E 6 7 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER B 20 ASP B 21 A 2 GLN B 161 ? PRO B 166 ? GLN B 156 PRO B 161 A 3 LYS B 135 ? GLY B 140 ? LYS B 135 GLY B 140 A 4 PRO B 208 ? LYS B 212 ? PRO B 198 LYS B 202 A 5 TRP B 219 ? TRP B 227 ? TRP B 207 TRP B 215 A 6 GLY B 238 ? HIS B 242 ? GLY B 226 HIS B 230 A 7 MET B 185 ? ALA B 188 ? MET B 180 ALA B 183 B 1 LYS B 77 ? SER B 79 ? LYS B 81 SER B 83 B 2 LEU B 59 ? ILE B 63 ? LEU B 64 ILE B 68 B 3 GLN B 15 ? ARG B 20 ? GLN B 30 ARG B 35 B 4 GLU B 25 ? LEU B 32 ? GLU B 39 LEU B 46 B 5 TRP B 37 ? THR B 40 ? TRP B 51 THR B 54 B 6 ALA B 101 ? LEU B 105 ? ALA B 104 LEU B 108 B 7 LEU B 81 ? ILE B 86 ? LEU B 85 ILE B 90 C 1 LEU B 46 ? TYR B 47 A LEU B 60 TYR B 60 C 2 LYS B 52 F ASN B 53 G LYS B 60 ASN B 60 D 1 SER D 5 ? ASP D 6 ? SER D 20 ASP D 21 D 2 GLN D 161 ? PRO D 166 ? GLN D 156 PRO D 161 D 3 LYS D 135 ? VAL D 138 ? LYS D 135 VAL D 138 D 4 PRO D 208 ? LYS D 212 ? PRO D 198 LYS D 202 D 5 TRP D 219 ? TRP D 227 ? TRP D 207 TRP D 215 D 6 GLY D 238 ? HIS D 242 ? GLY D 226 HIS D 230 D 7 MET D 185 ? ALA D 188 ? MET D 180 ALA D 183 E 1 LYS D 77 ? SER D 79 ? LYS D 81 SER D 83 E 2 LEU D 59 ? ILE D 63 ? LEU D 64 ILE D 68 E 3 GLN D 15 ? ARG D 20 ? GLN D 30 ARG D 35 E 4 GLU D 25 ? LEU D 32 ? GLU D 39 LEU D 46 E 5 TRP D 37 ? THR D 40 ? TRP D 51 THR D 54 E 6 ALA D 101 ? LEU D 105 ? ALA D 104 LEU D 108 E 7 LEU D 81 ? ILE D 86 ? LEU D 85 ILE D 90 F 1 LEU D 46 ? TYR D 47 A LEU D 60 TYR D 60 F 2 LYS D 52 F ASN D 53 G LYS D 60 ASN D 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 5 ? N SER B 20 O VAL B 162 ? O VAL B 157 A 2 3 O LEU B 165 ? O LEU B 160 N GLY B 136 ? N GLY B 136 A 3 4 N ARG B 137 ? N ARG B 137 O VAL B 210 ? O VAL B 200 A 4 5 N MET B 211 ? N MET B 201 O TYR B 220 ? O TYR B 208 A 5 6 N TRP B 227 ? N TRP B 215 O PHE B 239 ? O PHE B 227 A 6 7 O TYR B 240 ? O TYR B 228 N PHE B 186 ? N PHE B 181 B 1 2 O LYS B 77 ? O LYS B 81 N ILE B 63 ? N ILE B 68 B 2 3 O ARG B 62 ? O ARG B 67 N MET B 17 ? N MET B 32 B 3 4 N ARG B 20 ? N ARG B 35 O GLU B 25 ? O GLU B 39 B 4 5 N SER B 31 ? N SER B 45 O LEU B 39 ? O LEU B 53 B 5 6 N THR B 40 ? N THR B 54 O ALA B 101 ? O ALA B 104 B 6 7 O LYS B 104 ? O LYS B 107 N GLU B 82 ? N GLU B 86 C 1 2 N TYR B 47 A N TYR B 60 O LYS B 52 F O LYS B 60 D 1 2 N SER D 5 ? N SER D 20 O VAL D 162 ? O VAL D 157 D 2 3 O LEU D 165 ? O LEU D 160 N GLY D 136 ? N GLY D 136 D 3 4 N ARG D 137 ? N ARG D 137 O VAL D 210 ? O VAL D 200 D 4 5 N MET D 211 ? N MET D 201 O TYR D 220 ? O TYR D 208 D 5 6 N TRP D 227 ? N TRP D 215 O PHE D 239 ? O PHE D 227 D 6 7 O TYR D 240 ? O TYR D 228 N PHE D 186 ? N PHE D 181 E 1 2 O LYS D 77 ? O LYS D 81 N ILE D 63 ? N ILE D 68 E 2 3 O ARG D 62 ? O ARG D 67 N MET D 17 ? N MET D 32 E 3 4 N ARG D 20 ? N ARG D 35 O GLU D 25 ? O GLU D 39 E 4 5 N SER D 31 ? N SER D 45 O LEU D 39 ? O LEU D 53 E 5 6 N VAL D 38 ? N VAL D 52 O MET D 103 ? O MET D 106 E 6 7 O LEU D 102 ? O LEU D 105 N TYR D 85 ? N TYR D 89 F 1 2 N TYR D 47 A N TYR D 60 O LYS D 52 F O LYS D 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA B 401' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA D 401' AC3 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE 15U B 402' AC4 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE 15U D 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TYR B 190 A TYR B 184 . ? 1_555 ? 2 AC1 6 ARG B 233 A ARG B 221 . ? 1_555 ? 3 AC1 6 LYS B 236 ? LYS B 224 . ? 1_555 ? 4 AC1 6 HOH J . ? HOH B 509 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH B 516 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH B 529 . ? 1_555 ? 7 AC2 2 ARG D 233 A ARG D 221 . ? 1_555 ? 8 AC2 2 LYS D 236 ? LYS D 224 . ? 1_555 ? 9 AC3 12 HIS B 43 ? HIS B 57 . ? 1_555 ? 10 AC3 12 TYR B 47 A TYR B 60 . ? 1_555 ? 11 AC3 12 TRP B 50 D TRP B 60 . ? 1_555 ? 12 AC3 12 LYS B 52 F LYS B 60 . ? 1_555 ? 13 AC3 12 ASN B 151 B ASN B 149 . ? 1_555 ? 14 AC3 12 ASP B 199 ? ASP B 189 . ? 1_555 ? 15 AC3 12 ALA B 200 ? ALA B 190 . ? 1_555 ? 16 AC3 12 GLU B 202 ? GLU B 192 . ? 1_555 ? 17 AC3 12 SER B 226 ? SER B 214 . ? 1_555 ? 18 AC3 12 TRP B 227 ? TRP B 215 . ? 1_555 ? 19 AC3 12 GLY B 228 ? GLY B 216 . ? 1_555 ? 20 AC3 12 GLY B 230 ? GLY B 219 . ? 1_555 ? 21 AC4 13 HIS D 43 ? HIS D 57 . ? 1_555 ? 22 AC4 13 TYR D 47 A TYR D 60 . ? 1_555 ? 23 AC4 13 TRP D 50 D TRP D 60 . ? 1_555 ? 24 AC4 13 ASP D 199 ? ASP D 189 . ? 1_555 ? 25 AC4 13 ALA D 200 ? ALA D 190 . ? 1_555 ? 26 AC4 13 GLU D 202 ? GLU D 192 . ? 1_555 ? 27 AC4 13 VAL D 225 ? VAL D 213 . ? 1_555 ? 28 AC4 13 SER D 226 ? SER D 214 . ? 1_555 ? 29 AC4 13 TRP D 227 ? TRP D 215 . ? 1_555 ? 30 AC4 13 GLY D 228 ? GLY D 216 . ? 1_555 ? 31 AC4 13 GLY D 230 ? GLY D 219 . ? 1_555 ? 32 AC4 13 GLY D 238 ? GLY D 226 . ? 1_555 ? 33 AC4 13 HOH L . ? HOH D 521 . ? 1_555 ? # _database_PDB_matrix.entry_id 4HFP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4HFP _atom_sites.fract_transf_matrix[1][1] 0.012949 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012949 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010540 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A C n A 1 2 ALA 2 1 1 ALA ALA A B n A 1 3 ASP 3 1 1 ASP ASP A A n A 1 4 CYS 4 1 1 CYS CYS A . n A 1 5 GLY 5 2 2 GLY GLY A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 ARG 7 4 4 ARG ARG A . n A 1 8 PRO 8 5 5 PRO PRO A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 LYS 13 10 10 LYS LYS A . n A 1 14 SER 14 11 11 SER SER A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 GLU 16 13 13 GLU GLU A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 LYS 18 14 14 LYS LYS A A n A 1 19 THR 19 14 14 THR THR A B n A 1 20 GLU 20 14 14 GLU GLU A C n A 1 21 ARG 21 14 14 ARG ARG A D n A 1 22 GLU 22 14 14 GLU GLU A E n A 1 23 LEU 23 14 14 LEU LEU A F n A 1 24 LEU 24 14 14 LEU LEU A G n A 1 25 GLU 25 14 14 GLU GLU A H n A 1 26 SER 26 14 14 SER SER A I n A 1 27 TYR 27 14 14 TYR TYR A J n A 1 28 ILE 28 14 14 ILE ILE A K n A 1 29 ASP 29 14 14 ASP ASP A L n A 1 30 GLY 30 14 ? ? ? A M n A 1 31 ARG 31 15 ? ? ? A . n B 2 1 ILE 1 16 16 ILE ILE B . n B 2 2 VAL 2 17 17 VAL VAL B . n B 2 3 GLU 3 18 18 GLU GLU B . n B 2 4 GLY 4 19 19 GLY GLY B . n B 2 5 SER 5 20 20 SER SER B . n B 2 6 ASP 6 21 21 ASP ASP B . n B 2 7 ALA 7 22 22 ALA ALA B . n B 2 8 GLU 8 23 23 GLU GLU B . n B 2 9 ILE 9 24 24 ILE ILE B . n B 2 10 GLY 10 25 25 GLY GLY B . n B 2 11 MET 11 26 26 MET MET B . n B 2 12 SER 12 27 27 SER SER B . n B 2 13 PRO 13 28 28 PRO PRO B . n B 2 14 TRP 14 29 29 TRP TRP B . n B 2 15 GLN 15 30 30 GLN GLN B . n B 2 16 VAL 16 31 31 VAL VAL B . n B 2 17 MET 17 32 32 MET MET B . n B 2 18 LEU 18 33 33 LEU LEU B . n B 2 19 PHE 19 34 34 PHE PHE B . n B 2 20 ARG 20 35 35 ARG ARG B . n B 2 21 LYS 21 36 36 LYS LYS B . n B 2 22 SER 22 36 36 SER SER B A n B 2 23 PRO 23 37 37 PRO PRO B . n B 2 24 GLN 24 38 38 GLN GLN B . n B 2 25 GLU 25 39 39 GLU GLU B . n B 2 26 LEU 26 40 40 LEU LEU B . n B 2 27 LEU 27 41 41 LEU LEU B . n B 2 28 CYS 28 42 42 CYS CYS B . n B 2 29 GLY 29 43 43 GLY GLY B . n B 2 30 ALA 30 44 44 ALA ALA B . n B 2 31 SER 31 45 45 SER SER B . n B 2 32 LEU 32 46 46 LEU LEU B . n B 2 33 ILE 33 47 47 ILE ILE B . n B 2 34 SER 34 48 48 SER SER B . n B 2 35 ASP 35 49 49 ASP ASP B . n B 2 36 ARG 36 50 50 ARG ARG B . n B 2 37 TRP 37 51 51 TRP TRP B . n B 2 38 VAL 38 52 52 VAL VAL B . n B 2 39 LEU 39 53 53 LEU LEU B . n B 2 40 THR 40 54 54 THR THR B . n B 2 41 ALA 41 55 55 ALA ALA B . n B 2 42 ALA 42 56 56 ALA ALA B . n B 2 43 HIS 43 57 57 HIS HIS B . n B 2 44 CYS 44 58 58 CYS CYS B . n B 2 45 LEU 45 59 59 LEU LEU B . n B 2 46 LEU 46 60 60 LEU LEU B . n B 2 47 TYR 47 60 60 TYR TYR B A n B 2 48 PRO 48 60 60 PRO PRO B B n B 2 49 PRO 49 60 60 PRO PRO B C n B 2 50 TRP 50 60 60 TRP TRP B D n B 2 51 ASP 51 60 60 ASP ASP B E n B 2 52 LYS 52 60 60 LYS LYS B F n B 2 53 ASN 53 60 60 ASN ASN B G n B 2 54 PHE 54 60 60 PHE PHE B H n B 2 55 THR 55 60 60 THR THR B I n B 2 56 GLU 56 61 61 GLU GLU B . n B 2 57 ASN 57 62 62 ASN ASN B . n B 2 58 ASP 58 63 63 ASP ASP B . n B 2 59 LEU 59 64 64 LEU LEU B . n B 2 60 LEU 60 65 65 LEU LEU B . n B 2 61 VAL 61 66 66 VAL VAL B . n B 2 62 ARG 62 67 67 ARG ARG B . n B 2 63 ILE 63 68 68 ILE ILE B . n B 2 64 GLY 64 69 69 GLY GLY B . n B 2 65 LYS 65 70 70 LYS LYS B . n B 2 66 HIS 66 71 71 HIS HIS B . n B 2 67 SER 67 72 72 SER SER B . n B 2 68 ARG 68 73 73 ARG ARG B . n B 2 69 THR 69 74 74 THR THR B . n B 2 70 ARG 70 75 75 ARG ARG B . n B 2 71 TYR 71 76 76 TYR TYR B . n B 2 72 GLU 72 77 77 GLU GLU B . n B 2 73 ARG 73 77 77 ARG ARG B A n B 2 74 ASN 74 78 78 ASN ASN B . n B 2 75 ILE 75 79 79 ILE ILE B . n B 2 76 GLU 76 80 80 GLU GLU B . n B 2 77 LYS 77 81 81 LYS LYS B . n B 2 78 ILE 78 82 82 ILE ILE B . n B 2 79 SER 79 83 83 SER SER B . n B 2 80 MET 80 84 84 MET MET B . n B 2 81 LEU 81 85 85 LEU LEU B . n B 2 82 GLU 82 86 86 GLU GLU B . n B 2 83 LYS 83 87 87 LYS LYS B . n B 2 84 ILE 84 88 88 ILE ILE B . n B 2 85 TYR 85 89 89 TYR TYR B . n B 2 86 ILE 86 90 90 ILE ILE B . n B 2 87 HIS 87 91 91 HIS HIS B . n B 2 88 PRO 88 92 92 PRO PRO B . n B 2 89 ARG 89 93 93 ARG ARG B . n B 2 90 TYR 90 94 94 TYR TYR B . n B 2 91 ASN 91 95 95 ASN ASN B . n B 2 92 TRP 92 96 96 TRP TRP B . n B 2 93 ARG 93 97 97 ARG ARG B . n B 2 94 GLU 94 97 97 GLU GLU B A n B 2 95 ASN 95 98 98 ASN ASN B . n B 2 96 LEU 96 99 99 LEU LEU B . n B 2 97 ASP 97 100 100 ASP ASP B . n B 2 98 ARG 98 101 101 ARG ARG B . n B 2 99 ASP 99 102 102 ASP ASP B . n B 2 100 ILE 100 103 103 ILE ILE B . n B 2 101 ALA 101 104 104 ALA ALA B . n B 2 102 LEU 102 105 105 LEU LEU B . n B 2 103 MET 103 106 106 MET MET B . n B 2 104 LYS 104 107 107 LYS LYS B . n B 2 105 LEU 105 108 108 LEU LEU B . n B 2 106 LYS 106 109 109 LYS LYS B . n B 2 107 LYS 107 110 110 LYS LYS B . n B 2 108 PRO 108 111 111 PRO PRO B . n B 2 109 VAL 109 112 112 VAL VAL B . n B 2 110 ALA 110 113 113 ALA ALA B . n B 2 111 PHE 111 114 114 PHE PHE B . n B 2 112 SER 112 115 115 SER SER B . n B 2 113 ASP 113 116 116 ASP ASP B . n B 2 114 TYR 114 117 117 TYR TYR B . n B 2 115 ILE 115 118 118 ILE ILE B . n B 2 116 HIS 116 119 119 HIS HIS B . n B 2 117 PRO 117 120 120 PRO PRO B . n B 2 118 VAL 118 121 121 VAL VAL B . n B 2 119 CYS 119 122 122 CYS CYS B . n B 2 120 LEU 120 123 123 LEU LEU B . n B 2 121 PRO 121 124 124 PRO PRO B . n B 2 122 ASP 122 125 125 ASP ASP B . n B 2 123 ARG 123 126 126 ARG ARG B . n B 2 124 GLU 124 127 127 GLU GLU B . n B 2 125 THR 125 128 128 THR THR B . n B 2 126 ALA 126 129 129 ALA ALA B . n B 2 127 ALA 127 129 129 ALA ALA B A n B 2 128 SER 128 129 129 SER SER B B n B 2 129 LEU 129 129 129 LEU LEU B C n B 2 130 LEU 130 130 130 LEU LEU B . n B 2 131 GLN 131 131 131 GLN GLN B . n B 2 132 ALA 132 132 132 ALA ALA B . n B 2 133 GLY 133 133 133 GLY GLY B . n B 2 134 TYR 134 134 134 TYR TYR B . n B 2 135 LYS 135 135 135 LYS LYS B . n B 2 136 GLY 136 136 136 GLY GLY B . n B 2 137 ARG 137 137 137 ARG ARG B . n B 2 138 VAL 138 138 138 VAL VAL B . n B 2 139 THR 139 139 139 THR THR B . n B 2 140 GLY 140 140 140 GLY GLY B . n B 2 141 TRP 141 141 141 TRP TRP B . n B 2 142 GLY 142 142 142 GLY GLY B . n B 2 143 ASN 143 143 143 ASN ASN B . n B 2 144 LEU 144 144 144 LEU LEU B . n B 2 145 LYS 145 145 145 LYS LYS B . n B 2 146 GLU 146 146 146 GLU GLU B . n B 2 147 THR 147 147 147 THR THR B . n B 2 148 TRP 148 148 148 TRP TRP B . n B 2 149 THR 149 149 149 THR THR B . n B 2 150 ALA 150 149 149 ALA ALA B A n B 2 151 ASN 151 149 149 ASN ASN B B n B 2 152 VAL 152 149 149 VAL VAL B C n B 2 153 GLY 153 149 149 GLY GLY B D n B 2 154 LYS 154 149 149 LYS LYS B E n B 2 155 GLY 155 150 150 GLY GLY B . n B 2 156 GLN 156 151 151 GLN GLN B . n B 2 157 PRO 157 152 152 PRO PRO B . n B 2 158 SER 158 153 153 SER SER B . n B 2 159 VAL 159 154 154 VAL VAL B . n B 2 160 LEU 160 155 155 LEU LEU B . n B 2 161 GLN 161 156 156 GLN GLN B . n B 2 162 VAL 162 157 157 VAL VAL B . n B 2 163 VAL 163 158 158 VAL VAL B . n B 2 164 ASN 164 159 159 ASN ASN B . n B 2 165 LEU 165 160 160 LEU LEU B . n B 2 166 PRO 166 161 161 PRO PRO B . n B 2 167 ILE 167 162 162 ILE ILE B . n B 2 168 VAL 168 163 163 VAL VAL B . n B 2 169 GLU 169 164 164 GLU GLU B . n B 2 170 ARG 170 165 165 ARG ARG B . n B 2 171 PRO 171 166 166 PRO PRO B . n B 2 172 VAL 172 167 167 VAL VAL B . n B 2 173 CYS 173 168 168 CYS CYS B . n B 2 174 LYS 174 169 169 LYS LYS B . n B 2 175 ASP 175 170 170 ASP ASP B . n B 2 176 SER 176 171 171 SER SER B . n B 2 177 THR 177 172 172 THR THR B . n B 2 178 ARG 178 173 173 ARG ARG B . n B 2 179 ILE 179 174 174 ILE ILE B . n B 2 180 ARG 180 175 175 ARG ARG B . n B 2 181 ILE 181 176 176 ILE ILE B . n B 2 182 THR 182 177 177 THR THR B . n B 2 183 ASP 183 178 178 ASP ASP B . n B 2 184 ASN 184 179 179 ASN ASN B . n B 2 185 MET 185 180 180 MET MET B . n B 2 186 PHE 186 181 181 PHE PHE B . n B 2 187 CYS 187 182 182 CYS CYS B . n B 2 188 ALA 188 183 183 ALA ALA B . n B 2 189 GLY 189 184 184 GLY GLY B . n B 2 190 TYR 190 184 184 TYR TYR B A n B 2 191 LYS 191 185 185 LYS LYS B . n B 2 192 PRO 192 186 186 PRO PRO B . n B 2 193 ASP 193 186 186 ASP ASP B A n B 2 194 GLU 194 186 186 GLU GLU B B n B 2 195 GLY 195 186 186 GLY GLY B C n B 2 196 LYS 196 186 186 LYS LYS B D n B 2 197 ARG 197 187 187 ARG ARG B . n B 2 198 GLY 198 188 188 GLY GLY B . n B 2 199 ASP 199 189 189 ASP ASP B . n B 2 200 ALA 200 190 190 ALA ALA B . n B 2 201 CYS 201 191 191 CYS CYS B . n B 2 202 GLU 202 192 192 GLU GLU B . n B 2 203 GLY 203 193 193 GLY GLY B . n B 2 204 ASP 204 194 194 ASP ASP B . n B 2 205 ALA 205 195 195 ALA ALA B . n B 2 206 GLY 206 196 196 GLY GLY B . n B 2 207 GLY 207 197 197 GLY GLY B . n B 2 208 PRO 208 198 198 PRO PRO B . n B 2 209 PHE 209 199 199 PHE PHE B . n B 2 210 VAL 210 200 200 VAL VAL B . n B 2 211 MET 211 201 201 MET MET B . n B 2 212 LYS 212 202 202 LYS LYS B . n B 2 213 SER 213 203 203 SER SER B . n B 2 214 PRO 214 204 204 PRO PRO B . n B 2 215 PHE 215 204 204 PHE PHE B A n B 2 216 ASN 216 204 204 ASN ASN B B n B 2 217 ASN 217 205 205 ASN ASN B . n B 2 218 ARG 218 206 206 ARG ARG B . n B 2 219 TRP 219 207 207 TRP TRP B . n B 2 220 TYR 220 208 208 TYR TYR B . n B 2 221 GLN 221 209 209 GLN GLN B . n B 2 222 MET 222 210 210 MET MET B . n B 2 223 GLY 223 211 211 GLY GLY B . n B 2 224 ILE 224 212 212 ILE ILE B . n B 2 225 VAL 225 213 213 VAL VAL B . n B 2 226 SER 226 214 214 SER SER B . n B 2 227 TRP 227 215 215 TRP TRP B . n B 2 228 GLY 228 216 216 GLY GLY B . n B 2 229 GLU 229 217 217 GLU GLU B . n B 2 230 GLY 230 219 219 GLY GLY B . n B 2 231 CYS 231 220 220 CYS CYS B . n B 2 232 ASP 232 221 221 ASP ASP B . n B 2 233 ARG 233 221 221 ARG ARG B A n B 2 234 ASP 234 222 222 ASP ASP B . n B 2 235 GLY 235 223 223 GLY GLY B . n B 2 236 LYS 236 224 224 LYS LYS B . n B 2 237 TYR 237 225 225 TYR TYR B . n B 2 238 GLY 238 226 226 GLY GLY B . n B 2 239 PHE 239 227 227 PHE PHE B . n B 2 240 TYR 240 228 228 TYR TYR B . n B 2 241 THR 241 229 229 THR THR B . n B 2 242 HIS 242 230 230 HIS HIS B . n B 2 243 VAL 243 231 231 VAL VAL B . n B 2 244 PHE 244 232 232 PHE PHE B . n B 2 245 ARG 245 233 233 ARG ARG B . n B 2 246 LEU 246 234 234 LEU LEU B . n B 2 247 LYS 247 235 235 LYS LYS B . n B 2 248 LYS 248 236 236 LYS LYS B . n B 2 249 TRP 249 237 237 TRP TRP B . n B 2 250 ILE 250 238 238 ILE ILE B . n B 2 251 GLN 251 239 239 GLN GLN B . n B 2 252 LYS 252 240 240 LYS LYS B . n B 2 253 VAL 253 241 241 VAL VAL B . n B 2 254 ILE 254 242 242 ILE ILE B . n B 2 255 ASP 255 243 243 ASP ASP B . n B 2 256 GLN 256 244 244 GLN GLN B . n B 2 257 PHE 257 245 245 PHE PHE B . n B 2 258 GLY 258 246 ? ? ? B . n B 2 259 GLU 259 247 ? ? ? B . n C 1 1 GLU 1 1 1 GLU GLU C C n C 1 2 ALA 2 1 1 ALA ALA C B n C 1 3 ASP 3 1 1 ASP ASP C A n C 1 4 CYS 4 1 1 CYS CYS C . n C 1 5 GLY 5 2 2 GLY GLY C . n C 1 6 LEU 6 3 3 LEU LEU C . n C 1 7 ARG 7 4 4 ARG ARG C . n C 1 8 PRO 8 5 5 PRO PRO C . n C 1 9 LEU 9 6 6 LEU LEU C . n C 1 10 PHE 10 7 7 PHE PHE C . n C 1 11 GLU 11 8 8 GLU GLU C . n C 1 12 LYS 12 9 9 LYS LYS C . n C 1 13 LYS 13 10 10 LYS LYS C . n C 1 14 SER 14 11 11 SER SER C . n C 1 15 LEU 15 12 12 LEU LEU C . n C 1 16 GLU 16 13 13 GLU GLU C . n C 1 17 ASP 17 14 14 ASP ASP C . n C 1 18 LYS 18 14 14 LYS LYS C A n C 1 19 THR 19 14 14 THR THR C B n C 1 20 GLU 20 14 14 GLU GLU C C n C 1 21 ARG 21 14 14 ARG ARG C D n C 1 22 GLU 22 14 14 GLU GLU C E n C 1 23 LEU 23 14 14 LEU LEU C F n C 1 24 LEU 24 14 14 LEU LEU C G n C 1 25 GLU 25 14 14 GLU GLU C H n C 1 26 SER 26 14 14 SER SER C I n C 1 27 TYR 27 14 14 TYR TYR C J n C 1 28 ILE 28 14 14 ILE ILE C K n C 1 29 ASP 29 14 14 ASP ASP C L n C 1 30 GLY 30 14 15 GLY GLY C M n C 1 31 ARG 31 15 ? ? ? C . n D 2 1 ILE 1 16 16 ILE ILE D . n D 2 2 VAL 2 17 17 VAL VAL D . n D 2 3 GLU 3 18 18 GLU GLU D . n D 2 4 GLY 4 19 19 GLY GLY D . n D 2 5 SER 5 20 20 SER SER D . n D 2 6 ASP 6 21 21 ASP ASP D . n D 2 7 ALA 7 22 22 ALA ALA D . n D 2 8 GLU 8 23 23 GLU GLU D . n D 2 9 ILE 9 24 24 ILE ILE D . n D 2 10 GLY 10 25 25 GLY GLY D . n D 2 11 MET 11 26 26 MET MET D . n D 2 12 SER 12 27 27 SER SER D . n D 2 13 PRO 13 28 28 PRO PRO D . n D 2 14 TRP 14 29 29 TRP TRP D . n D 2 15 GLN 15 30 30 GLN GLN D . n D 2 16 VAL 16 31 31 VAL VAL D . n D 2 17 MET 17 32 32 MET MET D . n D 2 18 LEU 18 33 33 LEU LEU D . n D 2 19 PHE 19 34 34 PHE PHE D . n D 2 20 ARG 20 35 35 ARG ARG D . n D 2 21 LYS 21 36 36 LYS LYS D . n D 2 22 SER 22 36 36 SER SER D A n D 2 23 PRO 23 37 37 PRO PRO D . n D 2 24 GLN 24 38 38 GLN GLN D . n D 2 25 GLU 25 39 39 GLU GLU D . n D 2 26 LEU 26 40 40 LEU LEU D . n D 2 27 LEU 27 41 41 LEU LEU D . n D 2 28 CYS 28 42 42 CYS CYS D . n D 2 29 GLY 29 43 43 GLY GLY D . n D 2 30 ALA 30 44 44 ALA ALA D . n D 2 31 SER 31 45 45 SER SER D . n D 2 32 LEU 32 46 46 LEU LEU D . n D 2 33 ILE 33 47 47 ILE ILE D . n D 2 34 SER 34 48 48 SER SER D . n D 2 35 ASP 35 49 49 ASP ASP D . n D 2 36 ARG 36 50 50 ARG ARG D . n D 2 37 TRP 37 51 51 TRP TRP D . n D 2 38 VAL 38 52 52 VAL VAL D . n D 2 39 LEU 39 53 53 LEU LEU D . n D 2 40 THR 40 54 54 THR THR D . n D 2 41 ALA 41 55 55 ALA ALA D . n D 2 42 ALA 42 56 56 ALA ALA D . n D 2 43 HIS 43 57 57 HIS HIS D . n D 2 44 CYS 44 58 58 CYS CYS D . n D 2 45 LEU 45 59 59 LEU LEU D . n D 2 46 LEU 46 60 60 LEU LEU D . n D 2 47 TYR 47 60 60 TYR TYR D A n D 2 48 PRO 48 60 60 PRO PRO D B n D 2 49 PRO 49 60 60 PRO PRO D C n D 2 50 TRP 50 60 60 TRP TRP D D n D 2 51 ASP 51 60 60 ASP ASP D E n D 2 52 LYS 52 60 60 LYS LYS D F n D 2 53 ASN 53 60 60 ASN ASN D G n D 2 54 PHE 54 60 60 PHE PHE D H n D 2 55 THR 55 60 60 THR THR D I n D 2 56 GLU 56 61 61 GLU GLU D . n D 2 57 ASN 57 62 62 ASN ASN D . n D 2 58 ASP 58 63 63 ASP ASP D . n D 2 59 LEU 59 64 64 LEU LEU D . n D 2 60 LEU 60 65 65 LEU LEU D . n D 2 61 VAL 61 66 66 VAL VAL D . n D 2 62 ARG 62 67 67 ARG ARG D . n D 2 63 ILE 63 68 68 ILE ILE D . n D 2 64 GLY 64 69 69 GLY GLY D . n D 2 65 LYS 65 70 70 LYS LYS D . n D 2 66 HIS 66 71 71 HIS HIS D . n D 2 67 SER 67 72 72 SER SER D . n D 2 68 ARG 68 73 73 ARG ARG D . n D 2 69 THR 69 74 74 THR THR D . n D 2 70 ARG 70 75 75 ARG ARG D . n D 2 71 TYR 71 76 76 TYR TYR D . n D 2 72 GLU 72 77 77 GLU GLU D . n D 2 73 ARG 73 77 77 ARG ARG D A n D 2 74 ASN 74 78 78 ASN ASN D . n D 2 75 ILE 75 79 79 ILE ILE D . n D 2 76 GLU 76 80 80 GLU GLU D . n D 2 77 LYS 77 81 81 LYS LYS D . n D 2 78 ILE 78 82 82 ILE ILE D . n D 2 79 SER 79 83 83 SER SER D . n D 2 80 MET 80 84 84 MET MET D . n D 2 81 LEU 81 85 85 LEU LEU D . n D 2 82 GLU 82 86 86 GLU GLU D . n D 2 83 LYS 83 87 87 LYS LYS D . n D 2 84 ILE 84 88 88 ILE ILE D . n D 2 85 TYR 85 89 89 TYR TYR D . n D 2 86 ILE 86 90 90 ILE ILE D . n D 2 87 HIS 87 91 91 HIS HIS D . n D 2 88 PRO 88 92 92 PRO PRO D . n D 2 89 ARG 89 93 93 ARG ARG D . n D 2 90 TYR 90 94 94 TYR TYR D . n D 2 91 ASN 91 95 95 ASN ASN D . n D 2 92 TRP 92 96 96 TRP TRP D . n D 2 93 ARG 93 97 97 ARG ARG D . n D 2 94 GLU 94 97 97 GLU GLU D A n D 2 95 ASN 95 98 98 ASN ASN D . n D 2 96 LEU 96 99 99 LEU LEU D . n D 2 97 ASP 97 100 100 ASP ASP D . n D 2 98 ARG 98 101 101 ARG ARG D . n D 2 99 ASP 99 102 102 ASP ASP D . n D 2 100 ILE 100 103 103 ILE ILE D . n D 2 101 ALA 101 104 104 ALA ALA D . n D 2 102 LEU 102 105 105 LEU LEU D . n D 2 103 MET 103 106 106 MET MET D . n D 2 104 LYS 104 107 107 LYS LYS D . n D 2 105 LEU 105 108 108 LEU LEU D . n D 2 106 LYS 106 109 109 LYS LYS D . n D 2 107 LYS 107 110 110 LYS LYS D . n D 2 108 PRO 108 111 111 PRO PRO D . n D 2 109 VAL 109 112 112 VAL VAL D . n D 2 110 ALA 110 113 113 ALA ALA D . n D 2 111 PHE 111 114 114 PHE PHE D . n D 2 112 SER 112 115 115 SER SER D . n D 2 113 ASP 113 116 116 ASP ASP D . n D 2 114 TYR 114 117 117 TYR TYR D . n D 2 115 ILE 115 118 118 ILE ILE D . n D 2 116 HIS 116 119 119 HIS HIS D . n D 2 117 PRO 117 120 120 PRO PRO D . n D 2 118 VAL 118 121 121 VAL VAL D . n D 2 119 CYS 119 122 122 CYS CYS D . n D 2 120 LEU 120 123 123 LEU LEU D . n D 2 121 PRO 121 124 124 PRO PRO D . n D 2 122 ASP 122 125 125 ASP ASP D . n D 2 123 ARG 123 126 126 ARG ARG D . n D 2 124 GLU 124 127 127 GLU GLU D . n D 2 125 THR 125 128 128 THR THR D . n D 2 126 ALA 126 129 129 ALA ALA D . n D 2 127 ALA 127 129 129 ALA ALA D A n D 2 128 SER 128 129 129 SER SER D B n D 2 129 LEU 129 129 129 LEU LEU D C n D 2 130 LEU 130 130 130 LEU LEU D . n D 2 131 GLN 131 131 131 GLN GLN D . n D 2 132 ALA 132 132 132 ALA GLY D . n D 2 133 GLY 133 133 133 GLY GLY D . n D 2 134 TYR 134 134 134 TYR TYR D . n D 2 135 LYS 135 135 135 LYS LYS D . n D 2 136 GLY 136 136 136 GLY GLY D . n D 2 137 ARG 137 137 137 ARG ARG D . n D 2 138 VAL 138 138 138 VAL VAL D . n D 2 139 THR 139 139 139 THR THR D . n D 2 140 GLY 140 140 140 GLY GLY D . n D 2 141 TRP 141 141 141 TRP TRP D . n D 2 142 GLY 142 142 142 GLY GLY D . n D 2 143 ASN 143 143 143 ASN ASN D . n D 2 144 LEU 144 144 144 LEU LEU D . n D 2 145 LYS 145 145 145 LYS LYS D . n D 2 146 GLU 146 146 146 GLU GLU D . n D 2 147 THR 147 147 147 THR THR D . n D 2 148 TRP 148 148 148 TRP TRP D . n D 2 149 THR 149 149 149 THR THR D . n D 2 150 ALA 150 149 149 ALA ALA D A n D 2 151 ASN 151 149 149 ASN ASN D B n D 2 152 VAL 152 149 149 VAL VAL D C n D 2 153 GLY 153 149 149 GLY GLY D D n D 2 154 LYS 154 149 149 LYS LYS D E n D 2 155 GLY 155 150 150 GLY GLY D . n D 2 156 GLN 156 151 151 GLN GLN D . n D 2 157 PRO 157 152 152 PRO PRO D . n D 2 158 SER 158 153 153 SER SER D . n D 2 159 VAL 159 154 154 VAL VAL D . n D 2 160 LEU 160 155 155 LEU LEU D . n D 2 161 GLN 161 156 156 GLN GLN D . n D 2 162 VAL 162 157 157 VAL VAL D . n D 2 163 VAL 163 158 158 VAL VAL D . n D 2 164 ASN 164 159 159 ASN ASN D . n D 2 165 LEU 165 160 160 LEU LEU D . n D 2 166 PRO 166 161 161 PRO PRO D . n D 2 167 ILE 167 162 162 ILE ILE D . n D 2 168 VAL 168 163 163 VAL VAL D . n D 2 169 GLU 169 164 164 GLU GLU D . n D 2 170 ARG 170 165 165 ARG ARG D . n D 2 171 PRO 171 166 166 PRO PRO D . n D 2 172 VAL 172 167 167 VAL VAL D . n D 2 173 CYS 173 168 168 CYS CYS D . n D 2 174 LYS 174 169 169 LYS LYS D . n D 2 175 ASP 175 170 170 ASP ASP D . n D 2 176 SER 176 171 171 SER SER D . n D 2 177 THR 177 172 172 THR THR D . n D 2 178 ARG 178 173 173 ARG ARG D . n D 2 179 ILE 179 174 174 ILE ILE D . n D 2 180 ARG 180 175 175 ARG ARG D . n D 2 181 ILE 181 176 176 ILE ILE D . n D 2 182 THR 182 177 177 THR THR D . n D 2 183 ASP 183 178 178 ASP ASP D . n D 2 184 ASN 184 179 179 ASN ASN D . n D 2 185 MET 185 180 180 MET MET D . n D 2 186 PHE 186 181 181 PHE PHE D . n D 2 187 CYS 187 182 182 CYS CYS D . n D 2 188 ALA 188 183 183 ALA ALA D . n D 2 189 GLY 189 184 184 GLY GLY D . n D 2 190 TYR 190 184 184 TYR TYR D A n D 2 191 LYS 191 185 185 LYS LYS D . n D 2 192 PRO 192 186 186 PRO PRO D . n D 2 193 ASP 193 186 186 ASP ASP D A n D 2 194 GLU 194 186 186 GLU GLU D B n D 2 195 GLY 195 186 186 GLY GLY D C n D 2 196 LYS 196 186 186 LYS LYS D D n D 2 197 ARG 197 187 187 ARG ARG D . n D 2 198 GLY 198 188 188 GLY GLY D . n D 2 199 ASP 199 189 189 ASP ASP D . n D 2 200 ALA 200 190 190 ALA ALA D . n D 2 201 CYS 201 191 191 CYS CYS D . n D 2 202 GLU 202 192 192 GLU GLU D . n D 2 203 GLY 203 193 193 GLY GLY D . n D 2 204 ASP 204 194 194 ASP ASP D . n D 2 205 ALA 205 195 195 ALA ALA D . n D 2 206 GLY 206 196 196 GLY GLY D . n D 2 207 GLY 207 197 197 GLY GLY D . n D 2 208 PRO 208 198 198 PRO PRO D . n D 2 209 PHE 209 199 199 PHE PHE D . n D 2 210 VAL 210 200 200 VAL VAL D . n D 2 211 MET 211 201 201 MET MET D . n D 2 212 LYS 212 202 202 LYS LYS D . n D 2 213 SER 213 203 203 SER SER D . n D 2 214 PRO 214 204 204 PRO PRO D . n D 2 215 PHE 215 204 204 PHE PHE D A n D 2 216 ASN 216 204 204 ASN ASN D B n D 2 217 ASN 217 205 205 ASN ASN D . n D 2 218 ARG 218 206 206 ARG ARG D . n D 2 219 TRP 219 207 207 TRP TRP D . n D 2 220 TYR 220 208 208 TYR TYR D . n D 2 221 GLN 221 209 209 GLN GLN D . n D 2 222 MET 222 210 210 MET MET D . n D 2 223 GLY 223 211 211 GLY GLY D . n D 2 224 ILE 224 212 212 ILE ILE D . n D 2 225 VAL 225 213 213 VAL VAL D . n D 2 226 SER 226 214 214 SER SER D . n D 2 227 TRP 227 215 215 TRP TRP D . n D 2 228 GLY 228 216 216 GLY GLY D . n D 2 229 GLU 229 217 217 GLU GLU D . n D 2 230 GLY 230 219 219 GLY GLY D . n D 2 231 CYS 231 220 220 CYS CYS D . n D 2 232 ASP 232 221 221 ASP ASP D . n D 2 233 ARG 233 221 221 ARG ARG D A n D 2 234 ASP 234 222 222 ASP ASP D . n D 2 235 GLY 235 223 223 GLY GLY D . n D 2 236 LYS 236 224 224 LYS LYS D . n D 2 237 TYR 237 225 225 TYR TYR D . n D 2 238 GLY 238 226 226 GLY GLY D . n D 2 239 PHE 239 227 227 PHE PHE D . n D 2 240 TYR 240 228 228 TYR TYR D . n D 2 241 THR 241 229 229 THR THR D . n D 2 242 HIS 242 230 230 HIS HIS D . n D 2 243 VAL 243 231 231 VAL VAL D . n D 2 244 PHE 244 232 232 PHE PHE D . n D 2 245 ARG 245 233 233 ARG ARG D . n D 2 246 LEU 246 234 234 LEU LEU D . n D 2 247 LYS 247 235 235 LYS LYS D . n D 2 248 LYS 248 236 236 LYS LYS D . n D 2 249 TRP 249 237 237 TRP TRP D . n D 2 250 ILE 250 238 238 ILE ILE D . n D 2 251 GLN 251 239 239 GLN GLN D . n D 2 252 LYS 252 240 240 LYS LYS D . n D 2 253 VAL 253 241 241 VAL VAL D . n D 2 254 ILE 254 242 242 ILE ILE D . n D 2 255 ASP 255 243 243 ASP ASP D . n D 2 256 GLN 256 244 244 GLN GLN D . n D 2 257 PHE 257 245 245 PHE PHE D . n D 2 258 GLY 258 246 ? ? ? D . n D 2 259 GLU 259 247 ? ? ? D . n # _pdbx_molecule_features.prd_id PRD_000889 _pdbx_molecule_features.name S-argatroban _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000889 _pdbx_molecule.asym_id F # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2450 ? 1 MORE -20 ? 1 'SSA (A^2)' 13370 ? 2 'ABSA (A^2)' 2470 ? 2 MORE -20 ? 2 'SSA (A^2)' 13590 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? B HOH 529 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 516 ? 1_555 116.7 ? 2 O ? J HOH . ? B HOH 529 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? B LYS 236 ? B LYS 224 ? 1_555 173.8 ? 3 O ? J HOH . ? B HOH 516 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? B LYS 236 ? B LYS 224 ? 1_555 57.6 ? 4 O ? J HOH . ? B HOH 529 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? B ARG 233 ? B ARG 221 A 1_555 108.5 ? 5 O ? J HOH . ? B HOH 516 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? B ARG 233 ? B ARG 221 A 1_555 79.5 ? 6 O ? B LYS 236 ? B LYS 224 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? B ARG 233 ? B ARG 221 A 1_555 73.8 ? 7 O ? J HOH . ? B HOH 529 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 509 ? 1_555 91.8 ? 8 O ? J HOH . ? B HOH 516 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 509 ? 1_555 150.4 ? 9 O ? B LYS 236 ? B LYS 224 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 509 ? 1_555 94.2 ? 10 O ? B ARG 233 ? B ARG 221 A 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 509 ? 1_555 84.1 ? 11 O ? J HOH . ? B HOH 529 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 517 ? 1_555 93.1 ? 12 O ? J HOH . ? B HOH 516 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 517 ? 1_555 53.4 ? 13 O ? B LYS 236 ? B LYS 224 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 517 ? 1_555 81.5 ? 14 O ? B ARG 233 ? B ARG 221 A 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 517 ? 1_555 132.9 ? 15 O ? J HOH . ? B HOH 509 ? 1_555 NA ? E NA . ? B NA 401 ? 1_555 O ? J HOH . ? B HOH 517 ? 1_555 138.0 ? 16 O ? D LYS 236 ? D LYS 224 ? 1_555 NA ? G NA . ? D NA 401 ? 1_555 O ? D ARG 233 ? D ARG 221 A 1_555 79.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-13 2 'Structure model' 1 1 2013-04-10 3 'Structure model' 1 2 2013-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 37.5953 10.5674 -2.8221 0.1441 0.1059 0.3801 -0.0765 0.0513 -0.0817 6.1926 3.8686 8.2448 1.3092 -2.7766 2.9381 -0.2292 0.1432 0.0706 -0.4424 0.3268 -0.7999 -0.4864 0.1544 -0.0977 'X-RAY DIFFRACTION' 2 ? refined 29.9799 -1.5380 2.5553 0.0282 0.6147 0.7881 0.0114 -0.1709 0.2543 0.8532 -1.2948 10.8349 0.1506 -3.9802 -1.5851 -0.0172 -0.2361 -0.3490 -0.0845 0.0210 -0.1389 0.1165 -0.0992 -0.0038 'X-RAY DIFFRACTION' 3 ? refined 21.9865 18.8767 4.4834 0.1878 0.2382 0.3188 -0.0306 -0.0555 -0.0876 1.7500 0.6850 2.3605 0.5407 -1.1601 -1.3369 0.0675 0.1843 0.1097 0.0406 -0.1135 0.0321 -0.1413 0.0497 0.0459 'X-RAY DIFFRACTION' 4 ? refined 20.5917 22.3660 -6.2689 0.2488 0.0624 0.2649 -0.0171 0.0295 -0.0412 3.0755 1.3345 2.9096 1.8674 2.4217 0.4349 0.1714 -0.0058 0.1302 0.1608 -0.0662 0.1961 -0.1284 0.1080 -0.1052 'X-RAY DIFFRACTION' 5 ? refined 20.0358 27.4823 0.8671 0.3470 0.3511 0.4355 0.0701 0.0453 -0.1285 0.9877 0.9082 0.2355 0.4574 0.3288 -0.0321 -0.1586 -0.4372 0.5044 0.0273 0.0756 0.0395 -0.2763 -0.1762 0.0831 'X-RAY DIFFRACTION' 6 ? refined 20.2951 19.5438 -11.3975 0.1801 0.1343 0.1822 -0.0304 0.0187 0.0267 2.1884 1.6288 1.6158 -0.2717 0.0927 0.7300 -0.1227 0.0949 -0.0556 -0.3126 0.1249 -0.0831 -0.2280 0.0875 -0.0022 'X-RAY DIFFRACTION' 7 ? refined 19.1677 5.6884 -1.1233 0.0737 0.0945 0.2283 0.0137 0.0024 -0.0248 0.8798 0.5110 0.2132 0.4460 -0.2751 -0.4028 -0.0434 0.1123 0.0522 0.0039 0.0404 0.1343 -0.0212 -0.0438 0.0030 'X-RAY DIFFRACTION' 8 ? refined 10.1657 6.8710 -1.1708 0.1472 0.1326 0.1673 0.0587 0.0155 0.0421 2.1126 1.2439 0.7593 -0.2349 -1.0989 0.1794 -0.0418 -0.0108 -0.0130 -0.1069 0.0868 0.0374 -0.1581 -0.1530 -0.0450 'X-RAY DIFFRACTION' 9 ? refined 19.8545 4.3804 -0.4517 0.1045 0.0755 0.1133 0.0031 0.0105 0.0233 3.8805 2.4788 2.0151 0.8432 -0.0993 0.6822 -0.1770 -0.0872 -0.3693 0.1799 -0.0273 -0.2012 0.1410 0.0841 0.2043 'X-RAY DIFFRACTION' 10 ? refined 17.2882 11.1490 -10.1083 0.1437 0.1019 0.1754 -0.0195 0.0014 -0.0156 1.2790 2.8287 0.9944 -1.2059 1.1055 -0.3150 -0.0574 0.2069 0.2014 -0.3412 -0.0721 -0.1459 -0.1729 0.2029 0.1295 'X-RAY DIFFRACTION' 11 ? refined 48.7180 -1.1094 -1.5063 0.2728 0.3844 0.3772 0.0630 0.0125 -0.0813 9.2105 14.1278 1.0154 11.9551 -2.5678 -0.9080 0.2837 -0.9317 0.4444 0.1549 -0.3024 0.1753 -0.4525 0.6112 0.0187 'X-RAY DIFFRACTION' 12 ? refined 39.5606 -5.4582 -10.8275 0.2203 0.1872 0.4279 0.0496 -0.0073 -0.0105 8.2284 7.1339 4.2770 7.7335 0.1586 -0.1569 -0.4121 0.3549 0.7511 -0.4314 0.2681 0.8332 -0.0482 -0.1236 0.1440 'X-RAY DIFFRACTION' 13 ? refined 52.2480 -11.2191 -12.0067 0.1622 0.2291 0.2589 0.0103 -0.0138 0.0284 2.0046 4.5269 4.9252 -0.5169 -2.8965 3.7573 -0.1043 0.0405 0.2549 -0.2649 0.3650 0.0512 -0.0776 0.2164 -0.2607 'X-RAY DIFFRACTION' 14 ? refined 62.3532 -17.9916 -0.0374 0.3093 0.2159 0.4636 0.0173 0.0022 0.0096 1.6074 0.8197 0.9246 -0.2131 1.3153 0.3589 0.2163 0.1689 -0.1401 -0.1119 0.0725 -0.4170 0.0893 0.1084 -0.2887 'X-RAY DIFFRACTION' 15 ? refined 64.9966 -23.0288 -0.7565 0.4007 0.3428 0.4970 0.0138 0.0551 0.0091 3.4067 2.1295 0.3980 0.4108 1.1418 -0.7812 0.1735 0.0773 -0.4582 0.3914 -0.2871 -0.7139 -0.0734 0.2177 0.1135 'X-RAY DIFFRACTION' 16 ? refined 61.1464 -19.7189 1.2757 0.3647 0.2408 0.4358 0.0781 0.0219 0.0061 0.9481 1.6188 3.9207 0.5189 1.1760 1.7014 0.3919 0.1012 0.0346 0.3839 -0.0027 -0.2369 0.0500 0.2618 -0.3892 'X-RAY DIFFRACTION' 17 ? refined 50.4164 -12.9971 -0.0451 0.1710 0.1463 0.2171 0.0131 0.0395 0.0066 2.0514 2.0609 2.0039 0.1529 0.2662 0.9501 -0.0054 -0.2789 0.0229 0.1167 0.0152 -0.0145 0.0965 0.1114 -0.0098 'X-RAY DIFFRACTION' 18 ? refined 45.6227 -26.9243 -9.4255 0.1912 0.1366 0.3534 0.0767 -0.0316 0.0094 2.2722 1.6830 2.6709 0.9797 0.4943 -0.0617 -0.0726 -0.0627 -0.5044 -0.1696 -0.0840 -0.2145 0.3583 0.0766 0.1566 'X-RAY DIFFRACTION' 19 ? refined 44.9381 -20.4975 -7.2349 0.1208 0.1647 0.1820 0.0282 0.0118 -0.0082 1.8165 2.1772 0.5854 0.8638 0.2692 0.2136 0.1254 0.1070 -0.0285 -0.2093 -0.0398 -0.1300 -0.0174 -0.0902 -0.0856 'X-RAY DIFFRACTION' 20 ? refined 49.6099 -17.7283 12.9930 0.2155 0.6032 0.3362 -0.0602 0.0188 -0.0847 7.2540 9.7801 6.4182 7.4467 6.8195 6.1103 0.2965 -0.4060 -0.0816 0.5179 -0.0606 -0.2737 0.1552 -0.1115 -0.2359 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 10 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 11 ? ? A 14 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 16 ? ? B 38 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 39 ? ? B 59 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 60 ? ? B 85 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 86 ? ? B 127 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 128 ? ? B 146 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 147 ? ? B 185 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 186 ? ? B 205 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 206 ? ? B 245 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 C 1 ? ? C 8 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 C 9 ? ? C 14 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 D 16 ? ? D 30 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 D 31 ? ? D 59 ? ? ? ? 'X-RAY DIFFRACTION' 15 15 D 60 ? ? D 72 ? ? ? ? 'X-RAY DIFFRACTION' 16 16 D 73 ? ? D 100 ? ? ? ? 'X-RAY DIFFRACTION' 17 17 D 101 ? ? D 145 ? ? ? ? 'X-RAY DIFFRACTION' 18 18 D 146 ? ? D 185 ? ? ? ? 'X-RAY DIFFRACTION' 19 19 D 186 ? ? D 229 ? ? ? ? 'X-RAY DIFFRACTION' 20 20 D 230 ? ? D 245 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 MOLREP phasing 'from ccp4' ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 1 B ? 49.40 -164.63 2 1 PHE A 7 ? ? -126.50 -74.01 3 1 ILE A 14 K ? -132.69 -49.60 4 1 SER B 48 ? ? -150.89 -159.00 5 1 HIS B 71 ? ? -128.89 -60.02 6 1 ARG B 73 ? ? -144.96 -28.46 7 1 GLU B 97 A ? -139.45 -59.52 8 1 SER B 115 ? ? -136.51 -159.44 9 1 ASP B 125 ? ? -113.85 -160.23 10 1 ALA B 149 A ? -96.05 40.61 11 1 ASN B 149 B ? -162.17 -167.57 12 1 GLU B 186 B ? -163.96 -22.17 13 1 PHE B 204 A ? -92.40 -63.26 14 1 SER B 214 ? ? -114.74 -72.84 15 1 ALA C 1 B ? 61.68 -149.08 16 1 ASP C 1 A ? -100.65 70.14 17 1 PHE C 7 ? ? -125.77 -79.33 18 1 GLN D 38 ? ? -65.80 99.40 19 1 SER D 48 ? ? -152.26 -147.73 20 1 THR D 74 ? ? 67.62 -45.37 21 1 ILE D 79 ? ? -120.84 -56.27 22 1 ASN D 95 ? ? -104.42 79.67 23 1 GLU D 97 A ? -129.36 -55.69 24 1 LEU D 99 ? ? 70.57 53.26 25 1 TRP D 148 ? ? 83.66 -33.11 26 1 VAL D 149 C ? 76.79 113.39 27 1 ARG D 173 ? ? -97.14 32.89 28 1 ASP D 186 A ? 74.72 -12.05 29 1 GLU D 186 B ? -65.82 5.26 30 1 VAL D 213 ? ? -53.49 98.94 31 1 SER D 214 ? ? -89.06 -81.68 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id D _pdbx_unobs_or_zero_occ_atoms.auth_comp_id ALA _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 132 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CB _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id D _pdbx_unobs_or_zero_occ_atoms.label_comp_id ALA _pdbx_unobs_or_zero_occ_atoms.label_seq_id 132 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 14 M A GLY 30 2 1 Y 1 A ARG 15 ? A ARG 31 3 1 Y 1 B GLY 246 ? B GLY 258 4 1 Y 1 B GLU 247 ? B GLU 259 5 1 Y 1 C ARG 15 ? C ARG 31 6 1 Y 1 D GLY 246 ? D GLY 258 7 1 Y 1 D GLU 247 ? D GLU 259 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' 15U 5 water HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? '1.000H, 1.000K, L' 0.524 2 1 1 ? '-1.000H, 1.000K, -L' 0.476 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA 1 401 401 NA NA B . F 4 15U 1 402 301 15U NNN B . G 3 NA 1 401 401 NA NA D . H 4 15U 1 402 301 15U NNN D . I 5 HOH 1 101 9 HOH HOH A . I 5 HOH 2 102 28 HOH HOH A . I 5 HOH 3 103 40 HOH HOH A . I 5 HOH 4 104 61 HOH HOH A . I 5 HOH 5 105 65 HOH HOH A . J 5 HOH 1 501 2 HOH HOH B . J 5 HOH 2 502 3 HOH HOH B . J 5 HOH 3 503 4 HOH HOH B . J 5 HOH 4 504 5 HOH HOH B . J 5 HOH 5 505 6 HOH HOH B . J 5 HOH 6 506 8 HOH HOH B . J 5 HOH 7 507 10 HOH HOH B . J 5 HOH 8 508 14 HOH HOH B . J 5 HOH 9 509 20 HOH HOH B . J 5 HOH 10 510 21 HOH HOH B . J 5 HOH 11 511 25 HOH HOH B . J 5 HOH 12 512 26 HOH HOH B . J 5 HOH 13 513 27 HOH HOH B . J 5 HOH 14 514 29 HOH HOH B . J 5 HOH 15 515 30 HOH HOH B . J 5 HOH 16 516 31 HOH HOH B . J 5 HOH 17 517 32 HOH HOH B . J 5 HOH 18 518 37 HOH HOH B . J 5 HOH 19 519 38 HOH HOH B . J 5 HOH 20 520 39 HOH HOH B . J 5 HOH 21 521 43 HOH HOH B . J 5 HOH 22 522 44 HOH HOH B . J 5 HOH 23 523 45 HOH HOH B . J 5 HOH 24 524 49 HOH HOH B . J 5 HOH 25 525 50 HOH HOH B . J 5 HOH 26 526 51 HOH HOH B . J 5 HOH 27 527 53 HOH HOH B . J 5 HOH 28 528 56 HOH HOH B . J 5 HOH 29 529 66 HOH HOH B . K 5 HOH 1 101 1 HOH HOH C . K 5 HOH 2 102 15 HOH HOH C . K 5 HOH 3 103 18 HOH HOH C . K 5 HOH 4 104 23 HOH HOH C . K 5 HOH 5 105 41 HOH HOH C . K 5 HOH 6 106 46 HOH HOH C . L 5 HOH 1 501 7 HOH HOH D . L 5 HOH 2 502 11 HOH HOH D . L 5 HOH 3 503 12 HOH HOH D . L 5 HOH 4 504 13 HOH HOH D . L 5 HOH 5 505 16 HOH HOH D . L 5 HOH 6 506 17 HOH HOH D . L 5 HOH 7 507 19 HOH HOH D . L 5 HOH 8 508 22 HOH HOH D . L 5 HOH 9 509 24 HOH HOH D . L 5 HOH 10 510 33 HOH HOH D . L 5 HOH 11 511 34 HOH HOH D . L 5 HOH 12 512 35 HOH HOH D . L 5 HOH 13 513 36 HOH HOH D . L 5 HOH 14 514 42 HOH HOH D . L 5 HOH 15 515 47 HOH HOH D . L 5 HOH 16 516 48 HOH HOH D . L 5 HOH 17 517 52 HOH HOH D . L 5 HOH 18 518 54 HOH HOH D . L 5 HOH 19 519 55 HOH HOH D . L 5 HOH 20 520 57 HOH HOH D . L 5 HOH 21 521 58 HOH HOH D . L 5 HOH 22 522 59 HOH HOH D . L 5 HOH 23 523 60 HOH HOH D . L 5 HOH 24 524 62 HOH HOH D . L 5 HOH 25 525 63 HOH HOH D . L 5 HOH 26 526 64 HOH HOH D . #