data_4HFZ # _entry.id 4HFZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HFZ RCSB RCSB075418 WWPDB D_1000075418 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4HG7 _pdbx_database_related.details 'Structure solved using the same surface mutations of the same construct' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HFZ _pdbx_database_status.recvd_initial_deposition_date 2012-10-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anil, B.' 1 'Riedinger, C.' 2 'Endicott, J.A.' 3 'Noble, M.E.M.' 4 # _citation.id primary _citation.title 'The structure of an MDM2-Nutlin-3a complex solved by the use of a validated MDM2 surface-entropy reduction mutant.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 69 _citation.page_first 1358 _citation.page_last 1366 _citation.year 2013 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23897459 _citation.pdbx_database_id_DOI 10.1107/S0907444913004459 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Anil, B.' 1 primary 'Riedinger, C.' 2 primary 'Endicott, J.A.' 3 primary 'Noble, M.E.' 4 # _cell.entry_id 4HFZ _cell.length_a 52.944 _cell.length_b 52.944 _cell.length_c 196.201 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HFZ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 12419.212 2 6.3.2.- 'E69A, K70A' 'p53 binding domain (residues 17-125)' ? 2 polymer syn 'Cellular tumor antigen p53' 1807.973 2 ? ? 'residues 15-29' ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 48 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Double minute 2 protein, Hdm2, Oncoprotein Mdm2, p53-binding protein Mdm2' 2 'Antigen NY-CO-13, Phosphoprotein p53, Tumor suppressor p53' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDAAQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN ; ;SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDAAQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN ; A,C ? 2 'polypeptide(L)' no no SQETFSDLWKLLPEN SQETFSDLWKLLPEN B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLN n 1 3 ILE n 1 4 PRO n 1 5 ALA n 1 6 SER n 1 7 GLU n 1 8 GLN n 1 9 GLU n 1 10 THR n 1 11 LEU n 1 12 VAL n 1 13 ARG n 1 14 PRO n 1 15 LYS n 1 16 PRO n 1 17 LEU n 1 18 LEU n 1 19 LEU n 1 20 LYS n 1 21 LEU n 1 22 LEU n 1 23 LYS n 1 24 SER n 1 25 VAL n 1 26 GLY n 1 27 ALA n 1 28 GLN n 1 29 LYS n 1 30 ASP n 1 31 THR n 1 32 TYR n 1 33 THR n 1 34 MET n 1 35 LYS n 1 36 GLU n 1 37 VAL n 1 38 LEU n 1 39 PHE n 1 40 TYR n 1 41 LEU n 1 42 GLY n 1 43 GLN n 1 44 TYR n 1 45 ILE n 1 46 MET n 1 47 THR n 1 48 LYS n 1 49 ARG n 1 50 LEU n 1 51 TYR n 1 52 ASP n 1 53 ALA n 1 54 ALA n 1 55 GLN n 1 56 GLN n 1 57 HIS n 1 58 ILE n 1 59 VAL n 1 60 TYR n 1 61 CYS n 1 62 SER n 1 63 ASN n 1 64 ASP n 1 65 LEU n 1 66 LEU n 1 67 GLY n 1 68 ASP n 1 69 LEU n 1 70 PHE n 1 71 GLY n 1 72 VAL n 1 73 PRO n 1 74 SER n 1 75 PHE n 1 76 SER n 1 77 VAL n 1 78 LYS n 1 79 GLU n 1 80 HIS n 1 81 ARG n 1 82 LYS n 1 83 ILE n 1 84 TYR n 1 85 THR n 1 86 MET n 1 87 ILE n 1 88 TYR n 1 89 ARG n 1 90 ASN n 1 91 LEU n 1 92 VAL n 1 93 VAL n 1 94 VAL n 1 95 ASN n 1 96 GLN n 1 97 GLN n 1 98 GLU n 1 99 SER n 1 100 SER n 1 101 ASP n 1 102 SER n 1 103 GLY n 1 104 THR n 1 105 SER n 1 106 VAL n 1 107 SER n 1 108 GLU n 1 109 ASN n 2 1 SER n 2 2 GLN n 2 3 GLU n 2 4 THR n 2 5 PHE n 2 6 SER n 2 7 ASP n 2 8 LEU n 2 9 TRP n 2 10 LYS n 2 11 LEU n 2 12 LEU n 2 13 PRO n 2 14 GLU n 2 15 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE23)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Synthetic construct' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MDM2_HUMAN Q00987 1 ;SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN ; 17 ? 2 UNP P53_HUMAN P04637 2 SQETFSDLWKLLPEN 15 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HFZ A 1 ? 109 ? Q00987 17 ? 125 ? 17 125 2 2 4HFZ B 1 ? 15 ? P04637 15 ? 29 ? 15 29 3 1 4HFZ C 1 ? 109 ? Q00987 17 ? 125 ? 17 125 4 2 4HFZ D 1 ? 15 ? P04637 15 ? 29 ? 15 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HFZ ALA A 53 ? UNP Q00987 GLU 69 'ENGINEERED MUTATION' 69 1 1 4HFZ ALA A 54 ? UNP Q00987 LYS 70 'ENGINEERED MUTATION' 70 2 3 4HFZ ALA C 53 ? UNP Q00987 GLU 69 'ENGINEERED MUTATION' 69 3 3 4HFZ ALA C 54 ? UNP Q00987 LYS 70 'ENGINEERED MUTATION' 70 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4HFZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '0.2 M (NH4)2SO4, pH 4.6 and 30% w/v PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 296 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-02-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.96 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.96 # _reflns.entry_id 4HFZ _reflns.observed_criterion_sigma_I 5 _reflns.observed_criterion_sigma_F 3 _reflns.d_resolution_high 2.694 _reflns.d_resolution_low 46.68 _reflns.number_obs 8223 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.694 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4HFZ _refine.ls_number_reflns_obs 7733 _refine.ls_number_reflns_all 8367 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 10 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.12 _refine.ls_d_res_high 2.694 _refine.ls_percent_reflns_obs 96.86 _refine.ls_R_factor_obs 0.19777 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19527 _refine.ls_R_factor_R_free 0.24679 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 376 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.896 _refine.B_iso_mean 38.150 _refine.aniso_B[1][1] 1.43 _refine.aniso_B[2][2] 1.43 _refine.aniso_B[3][3] -2.85 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.792 _refine.pdbx_overall_ESU_R_Free 0.323 _refine.overall_SU_ML 0.212 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 19.730 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1620 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 1673 _refine_hist.d_res_high 2.694 _refine_hist.d_res_low 41.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.020 ? 1669 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.634 1.997 ? 2254 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.304 5.000 ? 194 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 43.870 23.623 ? 69 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 17.859 15.000 ? 316 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 22.314 15.000 ? 8 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.113 0.200 ? 258 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.009 0.021 ? 1200 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 93 0.09 0.05 'interatomic distance' 1 1 'X-RAY DIFFRACTION' ? ? ? 2 C 93 0.09 0.05 'interatomic distance' 1 2 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.694 _refine_ls_shell.d_res_low 2.764 _refine_ls_shell.number_reflns_R_work 456 _refine_ls_shell.R_factor_R_work 0.238 _refine_ls_shell.percent_reflns_obs 93.73 _refine_ls_shell.R_factor_R_free 0.385 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 C 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 26 A 107 0 0 ? ? ? ? ? ? ? ? 1 ? 2 C 26 C 107 0 0 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4HFZ _struct.title 'Crystal Structure of an MDM2/P53 Peptide Complex' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Mdm2 (E.C.6.3.2.-), Cellular tumor antigen p53' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HFZ _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'MDM2, p53, Surface Entropy Reduction, Mutant Validation, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? SER A 24 ? LYS A 31 SER A 40 1 ? 10 HELX_P HELX_P2 2 THR A 33 ? ARG A 49 ? THR A 49 ARG A 65 1 ? 17 HELX_P HELX_P3 3 ASP A 64 ? GLY A 71 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P4 4 GLU A 79 ? ARG A 89 ? GLU A 95 ARG A 105 1 ? 11 HELX_P HELX_P5 5 THR B 4 ? LYS B 10 ? THR B 18 LYS B 24 1 ? 7 HELX_P HELX_P6 6 PRO C 4 ? GLU C 9 ? PRO C 20 GLU C 25 1 ? 6 HELX_P HELX_P7 7 LYS C 15 ? SER C 24 ? LYS C 31 SER C 40 1 ? 10 HELX_P HELX_P8 8 MET C 34 ? LYS C 48 ? MET C 50 LYS C 64 1 ? 15 HELX_P HELX_P9 9 ASP C 64 ? GLY C 71 ? ASP C 80 GLY C 87 1 ? 8 HELX_P HELX_P10 10 GLU C 79 ? ARG C 89 ? GLU C 95 ARG C 105 1 ? 11 HELX_P HELX_P11 11 THR D 4 ? LYS D 10 ? THR D 18 LYS D 24 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 58 ? TYR A 60 ? ILE A 74 TYR A 76 A 2 SER A 74 ? SER A 76 ? SER A 90 SER A 92 B 1 LEU C 11 ? VAL C 12 ? LEU C 27 VAL C 28 B 2 TYR C 32 ? THR C 33 ? TYR C 48 THR C 49 C 1 ILE C 58 ? TYR C 60 ? ILE C 74 TYR C 76 C 2 SER C 74 ? SER C 76 ? SER C 90 SER C 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 59 ? N VAL A 75 O PHE A 75 ? O PHE A 91 B 1 2 N VAL C 12 ? N VAL C 28 O TYR C 32 ? O TYR C 48 C 1 2 N VAL C 59 ? N VAL C 75 O PHE C 75 ? O PHE C 91 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LYS A 29 ? LYS A 45 . ? 1_555 ? 2 AC1 4 ASP A 30 ? ASP A 46 . ? 1_555 ? 3 AC1 4 THR A 31 ? THR A 47 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH A 318 . ? 1_555 ? # _database_PDB_matrix.entry_id 4HFZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4HFZ _atom_sites.fract_transf_matrix[1][1] 0.018888 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018888 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005097 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 17 ? ? ? A . n A 1 2 GLN 2 18 ? ? ? A . n A 1 3 ILE 3 19 ? ? ? A . n A 1 4 PRO 4 20 ? ? ? A . n A 1 5 ALA 5 21 ? ? ? A . n A 1 6 SER 6 22 ? ? ? A . n A 1 7 GLU 7 23 ? ? ? A . n A 1 8 GLN 8 24 ? ? ? A . n A 1 9 GLU 9 25 ? ? ? A . n A 1 10 THR 10 26 26 THR THR A . n A 1 11 LEU 11 27 27 LEU LEU A . n A 1 12 VAL 12 28 28 VAL VAL A . n A 1 13 ARG 13 29 29 ARG ARG A . n A 1 14 PRO 14 30 30 PRO PRO A . n A 1 15 LYS 15 31 31 LYS LYS A . n A 1 16 PRO 16 32 32 PRO PRO A . n A 1 17 LEU 17 33 33 LEU LEU A . n A 1 18 LEU 18 34 34 LEU LEU A . n A 1 19 LEU 19 35 35 LEU LEU A . n A 1 20 LYS 20 36 36 LYS LYS A . n A 1 21 LEU 21 37 37 LEU LEU A . n A 1 22 LEU 22 38 38 LEU LEU A . n A 1 23 LYS 23 39 39 LYS LYS A . n A 1 24 SER 24 40 40 SER SER A . n A 1 25 VAL 25 41 41 VAL VAL A . n A 1 26 GLY 26 42 42 GLY GLY A . n A 1 27 ALA 27 43 43 ALA ALA A . n A 1 28 GLN 28 44 44 GLN GLN A . n A 1 29 LYS 29 45 45 LYS LYS A . n A 1 30 ASP 30 46 46 ASP ASP A . n A 1 31 THR 31 47 47 THR THR A . n A 1 32 TYR 32 48 48 TYR TYR A . n A 1 33 THR 33 49 49 THR THR A . n A 1 34 MET 34 50 50 MET MET A . n A 1 35 LYS 35 51 51 LYS LYS A . n A 1 36 GLU 36 52 52 GLU GLU A . n A 1 37 VAL 37 53 53 VAL VAL A . n A 1 38 LEU 38 54 54 LEU LEU A . n A 1 39 PHE 39 55 55 PHE PHE A . n A 1 40 TYR 40 56 56 TYR TYR A . n A 1 41 LEU 41 57 57 LEU LEU A . n A 1 42 GLY 42 58 58 GLY GLY A . n A 1 43 GLN 43 59 59 GLN GLN A . n A 1 44 TYR 44 60 60 TYR TYR A . n A 1 45 ILE 45 61 61 ILE ILE A . n A 1 46 MET 46 62 62 MET MET A . n A 1 47 THR 47 63 63 THR THR A . n A 1 48 LYS 48 64 64 LYS LYS A . n A 1 49 ARG 49 65 65 ARG ARG A . n A 1 50 LEU 50 66 66 LEU LEU A . n A 1 51 TYR 51 67 67 TYR TYR A . n A 1 52 ASP 52 68 68 ASP ASP A . n A 1 53 ALA 53 69 69 ALA ALA A . n A 1 54 ALA 54 70 70 ALA ALA A . n A 1 55 GLN 55 71 71 GLN GLN A . n A 1 56 GLN 56 72 72 GLN GLN A . n A 1 57 HIS 57 73 73 HIS HIS A . n A 1 58 ILE 58 74 74 ILE ILE A . n A 1 59 VAL 59 75 75 VAL VAL A . n A 1 60 TYR 60 76 76 TYR TYR A . n A 1 61 CYS 61 77 77 CYS CYS A . n A 1 62 SER 62 78 78 SER SER A . n A 1 63 ASN 63 79 79 ASN ASN A . n A 1 64 ASP 64 80 80 ASP ASP A . n A 1 65 LEU 65 81 81 LEU LEU A . n A 1 66 LEU 66 82 82 LEU LEU A . n A 1 67 GLY 67 83 83 GLY GLY A . n A 1 68 ASP 68 84 84 ASP ASP A . n A 1 69 LEU 69 85 85 LEU LEU A . n A 1 70 PHE 70 86 86 PHE PHE A . n A 1 71 GLY 71 87 87 GLY GLY A . n A 1 72 VAL 72 88 88 VAL VAL A . n A 1 73 PRO 73 89 89 PRO PRO A . n A 1 74 SER 74 90 90 SER SER A . n A 1 75 PHE 75 91 91 PHE PHE A . n A 1 76 SER 76 92 92 SER SER A . n A 1 77 VAL 77 93 93 VAL VAL A . n A 1 78 LYS 78 94 94 LYS LYS A . n A 1 79 GLU 79 95 95 GLU GLU A . n A 1 80 HIS 80 96 96 HIS HIS A . n A 1 81 ARG 81 97 97 ARG ARG A . n A 1 82 LYS 82 98 98 LYS LYS A . n A 1 83 ILE 83 99 99 ILE ILE A . n A 1 84 TYR 84 100 100 TYR TYR A . n A 1 85 THR 85 101 101 THR THR A . n A 1 86 MET 86 102 102 MET MET A . n A 1 87 ILE 87 103 103 ILE ILE A . n A 1 88 TYR 88 104 104 TYR TYR A . n A 1 89 ARG 89 105 105 ARG ARG A . n A 1 90 ASN 90 106 106 ASN ASN A . n A 1 91 LEU 91 107 107 LEU LEU A . n A 1 92 VAL 92 108 108 VAL VAL A . n A 1 93 VAL 93 109 ? ? ? A . n A 1 94 VAL 94 110 ? ? ? A . n A 1 95 ASN 95 111 ? ? ? A . n A 1 96 GLN 96 112 ? ? ? A . n A 1 97 GLN 97 113 ? ? ? A . n A 1 98 GLU 98 114 ? ? ? A . n A 1 99 SER 99 115 ? ? ? A . n A 1 100 SER 100 116 ? ? ? A . n A 1 101 ASP 101 117 ? ? ? A . n A 1 102 SER 102 118 ? ? ? A . n A 1 103 GLY 103 119 ? ? ? A . n A 1 104 THR 104 120 ? ? ? A . n A 1 105 SER 105 121 ? ? ? A . n A 1 106 VAL 106 122 ? ? ? A . n A 1 107 SER 107 123 ? ? ? A . n A 1 108 GLU 108 124 ? ? ? A . n A 1 109 ASN 109 125 ? ? ? A . n B 2 1 SER 1 15 ? ? ? B . n B 2 2 GLN 2 16 ? ? ? B . n B 2 3 GLU 3 17 17 GLU GLU B . n B 2 4 THR 4 18 18 THR THR B . n B 2 5 PHE 5 19 19 PHE PHE B . n B 2 6 SER 6 20 20 SER SER B . n B 2 7 ASP 7 21 21 ASP ASP B . n B 2 8 LEU 8 22 22 LEU LEU B . n B 2 9 TRP 9 23 23 TRP TRP B . n B 2 10 LYS 10 24 24 LYS LYS B . n B 2 11 LEU 11 25 25 LEU LEU B . n B 2 12 LEU 12 26 26 LEU LEU B . n B 2 13 PRO 13 27 27 PRO PRO B . n B 2 14 GLU 14 28 ? ? ? B . n B 2 15 ASN 15 29 ? ? ? B . n C 1 1 SER 1 17 17 SER SER C . n C 1 2 GLN 2 18 18 GLN GLN C . n C 1 3 ILE 3 19 19 ILE ILE C . n C 1 4 PRO 4 20 20 PRO PRO C . n C 1 5 ALA 5 21 21 ALA ALA C . n C 1 6 SER 6 22 22 SER SER C . n C 1 7 GLU 7 23 23 GLU GLU C . n C 1 8 GLN 8 24 24 GLN GLN C . n C 1 9 GLU 9 25 25 GLU GLU C . n C 1 10 THR 10 26 26 THR THR C . n C 1 11 LEU 11 27 27 LEU LEU C . n C 1 12 VAL 12 28 28 VAL VAL C . n C 1 13 ARG 13 29 29 ARG ARG C . n C 1 14 PRO 14 30 30 PRO PRO C . n C 1 15 LYS 15 31 31 LYS LYS C . n C 1 16 PRO 16 32 32 PRO PRO C . n C 1 17 LEU 17 33 33 LEU LEU C . n C 1 18 LEU 18 34 34 LEU LEU C . n C 1 19 LEU 19 35 35 LEU LEU C . n C 1 20 LYS 20 36 36 LYS LYS C . n C 1 21 LEU 21 37 37 LEU LEU C . n C 1 22 LEU 22 38 38 LEU LEU C . n C 1 23 LYS 23 39 39 LYS LYS C . n C 1 24 SER 24 40 40 SER SER C . n C 1 25 VAL 25 41 41 VAL VAL C . n C 1 26 GLY 26 42 42 GLY GLY C . n C 1 27 ALA 27 43 43 ALA ALA C . n C 1 28 GLN 28 44 44 GLN GLN C . n C 1 29 LYS 29 45 45 LYS LYS C . n C 1 30 ASP 30 46 46 ASP ASP C . n C 1 31 THR 31 47 47 THR THR C . n C 1 32 TYR 32 48 48 TYR TYR C . n C 1 33 THR 33 49 49 THR THR C . n C 1 34 MET 34 50 50 MET MET C . n C 1 35 LYS 35 51 51 LYS LYS C . n C 1 36 GLU 36 52 52 GLU GLU C . n C 1 37 VAL 37 53 53 VAL VAL C . n C 1 38 LEU 38 54 54 LEU LEU C . n C 1 39 PHE 39 55 55 PHE PHE C . n C 1 40 TYR 40 56 56 TYR TYR C . n C 1 41 LEU 41 57 57 LEU LEU C . n C 1 42 GLY 42 58 58 GLY GLY C . n C 1 43 GLN 43 59 59 GLN GLN C . n C 1 44 TYR 44 60 60 TYR TYR C . n C 1 45 ILE 45 61 61 ILE ILE C . n C 1 46 MET 46 62 62 MET MET C . n C 1 47 THR 47 63 63 THR THR C . n C 1 48 LYS 48 64 64 LYS LYS C . n C 1 49 ARG 49 65 65 ARG ARG C . n C 1 50 LEU 50 66 66 LEU LEU C . n C 1 51 TYR 51 67 67 TYR TYR C . n C 1 52 ASP 52 68 68 ASP ASP C . n C 1 53 ALA 53 69 69 ALA ALA C . n C 1 54 ALA 54 70 70 ALA ALA C . n C 1 55 GLN 55 71 71 GLN GLN C . n C 1 56 GLN 56 72 72 GLN GLN C . n C 1 57 HIS 57 73 73 HIS HIS C . n C 1 58 ILE 58 74 74 ILE ILE C . n C 1 59 VAL 59 75 75 VAL VAL C . n C 1 60 TYR 60 76 76 TYR TYR C . n C 1 61 CYS 61 77 77 CYS CYS C . n C 1 62 SER 62 78 78 SER SER C . n C 1 63 ASN 63 79 79 ASN ASN C . n C 1 64 ASP 64 80 80 ASP ASP C . n C 1 65 LEU 65 81 81 LEU LEU C . n C 1 66 LEU 66 82 82 LEU LEU C . n C 1 67 GLY 67 83 83 GLY GLY C . n C 1 68 ASP 68 84 84 ASP ASP C . n C 1 69 LEU 69 85 85 LEU LEU C . n C 1 70 PHE 70 86 86 PHE PHE C . n C 1 71 GLY 71 87 87 GLY GLY C . n C 1 72 VAL 72 88 88 VAL VAL C . n C 1 73 PRO 73 89 89 PRO PRO C . n C 1 74 SER 74 90 90 SER SER C . n C 1 75 PHE 75 91 91 PHE PHE C . n C 1 76 SER 76 92 92 SER SER C . n C 1 77 VAL 77 93 93 VAL VAL C . n C 1 78 LYS 78 94 94 LYS LYS C . n C 1 79 GLU 79 95 95 GLU GLU C . n C 1 80 HIS 80 96 96 HIS HIS C . n C 1 81 ARG 81 97 97 ARG ARG C . n C 1 82 LYS 82 98 98 LYS LYS C . n C 1 83 ILE 83 99 99 ILE ILE C . n C 1 84 TYR 84 100 100 TYR TYR C . n C 1 85 THR 85 101 101 THR THR C . n C 1 86 MET 86 102 102 MET MET C . n C 1 87 ILE 87 103 103 ILE ILE C . n C 1 88 TYR 88 104 104 TYR TYR C . n C 1 89 ARG 89 105 105 ARG ARG C . n C 1 90 ASN 90 106 106 ASN ASN C . n C 1 91 LEU 91 107 107 LEU LEU C . n C 1 92 VAL 92 108 108 VAL VAL C . n C 1 93 VAL 93 109 ? ? ? C . n C 1 94 VAL 94 110 ? ? ? C . n C 1 95 ASN 95 111 ? ? ? C . n C 1 96 GLN 96 112 ? ? ? C . n C 1 97 GLN 97 113 ? ? ? C . n C 1 98 GLU 98 114 ? ? ? C . n C 1 99 SER 99 115 ? ? ? C . n C 1 100 SER 100 116 ? ? ? C . n C 1 101 ASP 101 117 ? ? ? C . n C 1 102 SER 102 118 ? ? ? C . n C 1 103 GLY 103 119 ? ? ? C . n C 1 104 THR 104 120 ? ? ? C . n C 1 105 SER 105 121 ? ? ? C . n C 1 106 VAL 106 122 ? ? ? C . n C 1 107 SER 107 123 ? ? ? C . n C 1 108 GLU 108 124 ? ? ? C . n C 1 109 ASN 109 125 ? ? ? C . n D 2 1 SER 1 15 ? ? ? D . n D 2 2 GLN 2 16 ? ? ? D . n D 2 3 GLU 3 17 17 GLU GLU D . n D 2 4 THR 4 18 18 THR THR D . n D 2 5 PHE 5 19 19 PHE PHE D . n D 2 6 SER 6 20 20 SER SER D . n D 2 7 ASP 7 21 21 ASP ASP D . n D 2 8 LEU 8 22 22 LEU LEU D . n D 2 9 TRP 9 23 23 TRP TRP D . n D 2 10 LYS 10 24 24 LYS LYS D . n D 2 11 LEU 11 25 25 LEU LEU D . n D 2 12 LEU 12 26 26 LEU LEU D . n D 2 13 PRO 13 27 27 PRO PRO D . n D 2 14 GLU 14 28 ? ? ? D . n D 2 15 ASN 15 29 ? ? ? D . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G 2 1 C,D,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1300 ? 1 MORE -23 ? 1 'SSA (A^2)' 5620 ? 2 'ABSA (A^2)' 1100 ? 2 MORE -10 ? 2 'SSA (A^2)' 6540 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2013-08-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.7063 -23.2842 12.7627 0.0508 0.1258 0.0108 -0.0034 -0.0161 0.0192 3.7099 2.9726 3.1236 -0.1048 -0.7034 0.5872 0.0427 0.2070 0.0402 -0.0134 -0.0052 -0.0902 0.0824 0.0846 -0.0375 'X-RAY DIFFRACTION' 2 ? refined -1.7881 -15.6089 5.2208 0.2554 0.1665 0.0610 -0.0207 0.0261 0.0738 21.3439 10.0831 19.4178 -3.8167 2.6399 0.4997 -0.5002 1.1328 0.8350 -0.1600 0.4687 -0.1461 -0.4730 -0.0787 0.0316 'X-RAY DIFFRACTION' 3 ? refined -1.9057 -25.6203 37.3351 0.0935 0.1463 0.0131 0.0010 -0.0051 -0.0351 2.9398 4.7997 3.4995 -1.6157 0.6853 -1.4653 -0.0205 -0.1480 -0.0638 0.0994 0.0097 0.0722 0.3598 -0.1313 0.0108 'X-RAY DIFFRACTION' 4 ? refined -2.2163 -35.0042 28.7519 0.2391 0.2672 0.1236 -0.0092 -0.0879 -0.0090 3.8263 17.0973 16.4292 -1.3903 -2.5328 0.9884 -0.2826 0.5665 -0.2559 -0.7081 0.3134 0.3779 0.8391 -0.4089 -0.0308 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 26 ? ? A 108 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 17 ? ? B 27 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 25 ? ? C 108 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 17 ? ? D 27 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 17 ? A SER 1 2 1 Y 1 A GLN 18 ? A GLN 2 3 1 Y 1 A ILE 19 ? A ILE 3 4 1 Y 1 A PRO 20 ? A PRO 4 5 1 Y 1 A ALA 21 ? A ALA 5 6 1 Y 1 A SER 22 ? A SER 6 7 1 Y 1 A GLU 23 ? A GLU 7 8 1 Y 1 A GLN 24 ? A GLN 8 9 1 Y 1 A GLU 25 ? A GLU 9 10 1 Y 1 A VAL 109 ? A VAL 93 11 1 Y 1 A VAL 110 ? A VAL 94 12 1 Y 1 A ASN 111 ? A ASN 95 13 1 Y 1 A GLN 112 ? A GLN 96 14 1 Y 1 A GLN 113 ? A GLN 97 15 1 Y 1 A GLU 114 ? A GLU 98 16 1 Y 1 A SER 115 ? A SER 99 17 1 Y 1 A SER 116 ? A SER 100 18 1 Y 1 A ASP 117 ? A ASP 101 19 1 Y 1 A SER 118 ? A SER 102 20 1 Y 1 A GLY 119 ? A GLY 103 21 1 Y 1 A THR 120 ? A THR 104 22 1 Y 1 A SER 121 ? A SER 105 23 1 Y 1 A VAL 122 ? A VAL 106 24 1 Y 1 A SER 123 ? A SER 107 25 1 Y 1 A GLU 124 ? A GLU 108 26 1 Y 1 A ASN 125 ? A ASN 109 27 1 Y 1 B SER 15 ? B SER 1 28 1 Y 1 B GLN 16 ? B GLN 2 29 1 Y 1 B GLU 28 ? B GLU 14 30 1 Y 1 B ASN 29 ? B ASN 15 31 1 Y 1 C VAL 109 ? C VAL 93 32 1 Y 1 C VAL 110 ? C VAL 94 33 1 Y 1 C ASN 111 ? C ASN 95 34 1 Y 1 C GLN 112 ? C GLN 96 35 1 Y 1 C GLN 113 ? C GLN 97 36 1 Y 1 C GLU 114 ? C GLU 98 37 1 Y 1 C SER 115 ? C SER 99 38 1 Y 1 C SER 116 ? C SER 100 39 1 Y 1 C ASP 117 ? C ASP 101 40 1 Y 1 C SER 118 ? C SER 102 41 1 Y 1 C GLY 119 ? C GLY 103 42 1 Y 1 C THR 120 ? C THR 104 43 1 Y 1 C SER 121 ? C SER 105 44 1 Y 1 C VAL 122 ? C VAL 106 45 1 Y 1 C SER 123 ? C SER 107 46 1 Y 1 C GLU 124 ? C GLU 108 47 1 Y 1 C ASN 125 ? C ASN 109 48 1 Y 1 D SER 15 ? D SER 1 49 1 Y 1 D GLN 16 ? D GLN 2 50 1 Y 1 D GLU 28 ? D GLU 14 51 1 Y 1 D ASN 29 ? D ASN 15 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 1 201 1 SO4 SO4 A . F 4 HOH 1 301 4 HOH HOH A . F 4 HOH 2 302 6 HOH HOH A . F 4 HOH 3 303 8 HOH HOH A . F 4 HOH 4 304 10 HOH HOH A . F 4 HOH 5 305 11 HOH HOH A . F 4 HOH 6 306 12 HOH HOH A . F 4 HOH 7 307 14 HOH HOH A . F 4 HOH 8 308 15 HOH HOH A . F 4 HOH 9 309 16 HOH HOH A . F 4 HOH 10 310 17 HOH HOH A . F 4 HOH 11 311 21 HOH HOH A . F 4 HOH 12 312 22 HOH HOH A . F 4 HOH 13 313 25 HOH HOH A . F 4 HOH 14 314 27 HOH HOH A . F 4 HOH 15 315 29 HOH HOH A . F 4 HOH 16 316 30 HOH HOH A . F 4 HOH 17 317 33 HOH HOH A . F 4 HOH 18 318 34 HOH HOH A . F 4 HOH 19 319 35 HOH HOH A . F 4 HOH 20 320 36 HOH HOH A . F 4 HOH 21 321 37 HOH HOH A . F 4 HOH 22 322 38 HOH HOH A . F 4 HOH 23 323 39 HOH HOH A . F 4 HOH 24 324 42 HOH HOH A . F 4 HOH 25 325 44 HOH HOH A . F 4 HOH 26 326 45 HOH HOH A . F 4 HOH 27 327 46 HOH HOH A . G 4 HOH 1 101 3 HOH HOH B . G 4 HOH 2 102 13 HOH HOH B . H 4 HOH 1 201 1 HOH HOH C . H 4 HOH 2 202 2 HOH HOH C . H 4 HOH 3 203 5 HOH HOH C . H 4 HOH 4 204 7 HOH HOH C . H 4 HOH 5 205 9 HOH HOH C . H 4 HOH 6 206 18 HOH HOH C . H 4 HOH 7 207 19 HOH HOH C . H 4 HOH 8 208 20 HOH HOH C . H 4 HOH 9 209 23 HOH HOH C . H 4 HOH 10 210 24 HOH HOH C . H 4 HOH 11 211 26 HOH HOH C . H 4 HOH 12 212 28 HOH HOH C . H 4 HOH 13 213 31 HOH HOH C . H 4 HOH 14 214 32 HOH HOH C . H 4 HOH 15 215 40 HOH HOH C . H 4 HOH 16 216 41 HOH HOH C . H 4 HOH 17 217 43 HOH HOH C . H 4 HOH 18 218 47 HOH HOH C . H 4 HOH 19 219 48 HOH HOH C . #