HEADER TRANSFERASE, HYDROLASE 08-OCT-12 4HGO TITLE 2-KETO-3-DEOXY-D-GLYCERO-D-GALACTONONONATE-9-PHOSPHATE TITLE 2 PHOSPHOHYDROLASE FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH TITLE 3 TRANSITION STATE MIMIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYLNEURAMINATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 2-KETO-3-DEOXY-D-GLYCERO-D-GALACTONONONATE-9-PHOSPHATE COMPND 5 PHOSPHOHYDROLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_1713; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3A-626 KEYWDS ROSSMANN FOLD, PHOSPHOHYDROYLASE, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.D.DAUGHTRY,K.N.ALLEN REVDAT 6 20-SEP-23 4HGO 1 REMARK REVDAT 5 10-FEB-21 4HGO 1 JRNL HETSYN REVDAT 4 29-JUL-20 4HGO 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 12-NOV-14 4HGO 1 KEYWDS REVDAT 2 28-AUG-13 4HGO 1 JRNL REVDAT 1 21-AUG-13 4HGO 0 JRNL AUTH K.D.DAUGHTRY,H.HUANG,V.MALASHKEVICH,Y.PATSKOVSKY,W.LIU, JRNL AUTH 2 U.RAMAGOPAL,J.M.SAUDER,S.K.BURLEY,S.C.ALMO, JRNL AUTH 3 D.DUNAWAY-MARIANO,K.N.ALLEN JRNL TITL STRUCTURAL BASIS FOR THE DIVERGENCE OF SUBSTRATE SPECIFICITY JRNL TITL 2 AND BIOLOGICAL FUNCTION WITHIN HAD PHOSPHATASES IN JRNL TITL 3 LIPOPOLYSACCHARIDE AND SIALIC ACID BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 52 5372 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23848398 JRNL DOI 10.1021/BI400659K REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4846 - 5.0526 1.00 2767 154 0.1703 0.2072 REMARK 3 2 5.0526 - 4.0140 1.00 2645 147 0.1404 0.1556 REMARK 3 3 4.0140 - 3.5077 0.99 2581 143 0.1606 0.2174 REMARK 3 4 3.5077 - 3.1874 1.00 2594 144 0.1898 0.2830 REMARK 3 5 3.1874 - 2.9592 1.00 2571 143 0.1995 0.2266 REMARK 3 6 2.9592 - 2.7849 1.00 2575 143 0.2129 0.2924 REMARK 3 7 2.7849 - 2.6455 0.99 2539 141 0.2152 0.2791 REMARK 3 8 2.6455 - 2.5304 1.00 2557 142 0.2063 0.2958 REMARK 3 9 2.5304 - 2.4331 0.99 2551 142 0.2107 0.2647 REMARK 3 10 2.4331 - 2.3492 1.00 2536 141 0.2094 0.2807 REMARK 3 11 2.3492 - 2.2757 0.99 2524 140 0.2220 0.3142 REMARK 3 12 2.2757 - 2.2107 0.99 2538 141 0.2310 0.2960 REMARK 3 13 2.2107 - 2.1525 0.99 2510 140 0.2573 0.3085 REMARK 3 14 2.1525 - 2.1000 0.99 2516 139 0.2757 0.3469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5280 REMARK 3 ANGLE : 1.042 7117 REMARK 3 CHIRALITY : 0.071 800 REMARK 3 PLANARITY : 0.003 904 REMARK 3 DIHEDRAL : 14.861 1931 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : ROTATING-ANODE REMARK 200 OPTICS : HELIOS MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 6.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.73 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48500 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3E8M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% POLYETHYLENE GLYCOL 3350 AND 100 REMARK 280 MM MAGNESIUM FORMATE. CRYSTAL SOAKED WITH 20 MM NAVN4 AND 50 MM REMARK 280 KDN FOR 1 WEEK. CRYSTAL DRAGGED THROUGH PARATONE PRIOR TO FLASH REMARK 280 COOLING, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.64800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.16200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.64800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.16200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 325 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 164 REMARK 465 GLN B 164 REMARK 465 GLN C 164 REMARK 465 MET D 1 REMARK 465 GLN D 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 VN4 C 201 O HOH C 338 1.85 REMARK 500 O1 VN4 D 202 O HOH D 333 1.98 REMARK 500 OD2 ASP C 103 O HOH C 334 1.99 REMARK 500 O3 VN4 A 201 O HOH A 348 2.08 REMARK 500 OD1 ASN C 106 O HOH C 338 2.10 REMARK 500 NZ LYS B 80 O HOH B 356 2.12 REMARK 500 ND2 ASN D 106 O HOH D 333 2.16 REMARK 500 NZ LYS A 80 O HOH A 348 2.19 REMARK 500 O3 VN4 B 201 O HOH B 356 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 11 -70.70 -106.48 REMARK 500 VAL A 14 -63.86 -121.88 REMARK 500 ILE B 11 -72.30 -105.36 REMARK 500 ASP B 23 -169.04 -100.17 REMARK 500 ILE C 11 -73.07 -104.27 REMARK 500 VAL C 14 -70.10 -121.84 REMARK 500 ILE D 11 -75.27 -102.58 REMARK 500 ASP D 23 -165.79 -104.57 REMARK 500 ASN D 106 1.27 -68.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 12 O 92.0 REMARK 620 3 ASP A 103 OD1 85.3 93.5 REMARK 620 4 VN4 A 201 O1 84.3 99.8 163.4 REMARK 620 5 HOH A 337 O 83.3 174.8 84.0 82.0 REMARK 620 6 HOH A 338 O 173.0 88.4 87.7 102.5 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN4 A 201 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 VN4 A 201 O1 92.2 REMARK 620 3 VN4 A 201 O2 86.0 118.2 REMARK 620 4 VN4 A 201 O3 99.4 120.7 120.5 REMARK 620 5 KDN A 202 O9 172.1 80.0 98.3 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 12 O 102.5 REMARK 620 3 ASP B 103 OD1 94.4 100.4 REMARK 620 4 VN4 B 201 O2 87.1 99.4 159.3 REMARK 620 5 HOH B 347 O 77.3 179.7 79.8 80.4 REMARK 620 6 HOH B 348 O 172.4 83.9 88.4 87.9 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN4 B 201 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD2 REMARK 620 2 VN4 B 201 O1 92.0 REMARK 620 3 VN4 B 201 O2 96.9 117.3 REMARK 620 4 VN4 B 201 O3 101.1 120.6 118.1 REMARK 620 5 KDN D 203 O9 174.8 88.2 87.7 74.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD1 REMARK 620 2 ASP C 12 O 93.6 REMARK 620 3 ASP C 103 OD1 79.7 93.7 REMARK 620 4 VN4 C 201 O1 95.6 99.3 166.5 REMARK 620 5 HOH C 329 O 173.3 90.9 95.1 88.5 REMARK 620 6 HOH C 330 O 75.8 169.4 85.3 81.2 99.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN4 C 201 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 VN4 C 201 O1 108.5 REMARK 620 3 VN4 C 201 O2 81.0 118.7 REMARK 620 4 VN4 C 201 O3 97.1 121.3 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD2 REMARK 620 2 ASP D 12 O 104.5 REMARK 620 3 ASP D 103 OD1 82.7 96.8 REMARK 620 4 VN4 D 202 O2 92.9 110.9 152.1 REMARK 620 5 HOH D 325 O 77.8 170.6 74.3 77.8 REMARK 620 6 HOH D 326 O 163.4 85.7 83.0 95.8 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN4 D 202 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 VN4 D 202 O1 88.1 REMARK 620 3 VN4 D 202 O2 93.3 120.5 REMARK 620 4 VN4 D 202 O3 93.0 119.5 119.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E8M RELATED DB: PDB REMARK 900 RELATED ID: 4HGN RELATED DB: PDB REMARK 900 RELATED ID: 4HGP RELATED DB: PDB REMARK 900 RELATED ID: 4HGQ RELATED DB: PDB REMARK 900 RELATED ID: 4HGR RELATED DB: PDB DBREF 4HGO A 1 164 UNP Q8A712 Q8A712_BACTN 1 164 DBREF 4HGO B 1 164 UNP Q8A712 Q8A712_BACTN 1 164 DBREF 4HGO C 1 164 UNP Q8A712 Q8A712_BACTN 1 164 DBREF 4HGO D 1 164 UNP Q8A712 Q8A712_BACTN 1 164 SEQRES 1 A 164 MET LYS GLU ILE LYS LEU ILE LEU THR ASP ILE ASP GLY SEQRES 2 A 164 VAL TRP THR ASP GLY GLY MET PHE TYR ASP GLN THR GLY SEQRES 3 A 164 ASN GLU TRP LYS LYS PHE ASN THR SER ASP SER ALA GLY SEQRES 4 A 164 ILE PHE TRP ALA HIS ASN LYS GLY ILE PRO VAL GLY ILE SEQRES 5 A 164 LEU THR GLY GLU LYS THR GLU ILE VAL ARG ARG ARG ALA SEQRES 6 A 164 GLU LYS LEU LYS VAL ASP TYR LEU PHE GLN GLY VAL VAL SEQRES 7 A 164 ASP LYS LEU SER ALA ALA GLU GLU LEU CYS ASN GLU LEU SEQRES 8 A 164 GLY ILE ASN LEU GLU GLN VAL ALA TYR ILE GLY ASP ASP SEQRES 9 A 164 LEU ASN ASP ALA LYS LEU LEU LYS ARG VAL GLY ILE ALA SEQRES 10 A 164 GLY VAL PRO ALA SER ALA PRO PHE TYR ILE ARG ARG LEU SEQRES 11 A 164 SER THR ILE PHE LEU GLU LYS ARG GLY GLY GLU GLY VAL SEQRES 12 A 164 PHE ARG GLU PHE VAL GLU LYS VAL LEU GLY ILE ASN LEU SEQRES 13 A 164 GLU ASP PHE ILE ALA VAL ILE GLN SEQRES 1 B 164 MET LYS GLU ILE LYS LEU ILE LEU THR ASP ILE ASP GLY SEQRES 2 B 164 VAL TRP THR ASP GLY GLY MET PHE TYR ASP GLN THR GLY SEQRES 3 B 164 ASN GLU TRP LYS LYS PHE ASN THR SER ASP SER ALA GLY SEQRES 4 B 164 ILE PHE TRP ALA HIS ASN LYS GLY ILE PRO VAL GLY ILE SEQRES 5 B 164 LEU THR GLY GLU LYS THR GLU ILE VAL ARG ARG ARG ALA SEQRES 6 B 164 GLU LYS LEU LYS VAL ASP TYR LEU PHE GLN GLY VAL VAL SEQRES 7 B 164 ASP LYS LEU SER ALA ALA GLU GLU LEU CYS ASN GLU LEU SEQRES 8 B 164 GLY ILE ASN LEU GLU GLN VAL ALA TYR ILE GLY ASP ASP SEQRES 9 B 164 LEU ASN ASP ALA LYS LEU LEU LYS ARG VAL GLY ILE ALA SEQRES 10 B 164 GLY VAL PRO ALA SER ALA PRO PHE TYR ILE ARG ARG LEU SEQRES 11 B 164 SER THR ILE PHE LEU GLU LYS ARG GLY GLY GLU GLY VAL SEQRES 12 B 164 PHE ARG GLU PHE VAL GLU LYS VAL LEU GLY ILE ASN LEU SEQRES 13 B 164 GLU ASP PHE ILE ALA VAL ILE GLN SEQRES 1 C 164 MET LYS GLU ILE LYS LEU ILE LEU THR ASP ILE ASP GLY SEQRES 2 C 164 VAL TRP THR ASP GLY GLY MET PHE TYR ASP GLN THR GLY SEQRES 3 C 164 ASN GLU TRP LYS LYS PHE ASN THR SER ASP SER ALA GLY SEQRES 4 C 164 ILE PHE TRP ALA HIS ASN LYS GLY ILE PRO VAL GLY ILE SEQRES 5 C 164 LEU THR GLY GLU LYS THR GLU ILE VAL ARG ARG ARG ALA SEQRES 6 C 164 GLU LYS LEU LYS VAL ASP TYR LEU PHE GLN GLY VAL VAL SEQRES 7 C 164 ASP LYS LEU SER ALA ALA GLU GLU LEU CYS ASN GLU LEU SEQRES 8 C 164 GLY ILE ASN LEU GLU GLN VAL ALA TYR ILE GLY ASP ASP SEQRES 9 C 164 LEU ASN ASP ALA LYS LEU LEU LYS ARG VAL GLY ILE ALA SEQRES 10 C 164 GLY VAL PRO ALA SER ALA PRO PHE TYR ILE ARG ARG LEU SEQRES 11 C 164 SER THR ILE PHE LEU GLU LYS ARG GLY GLY GLU GLY VAL SEQRES 12 C 164 PHE ARG GLU PHE VAL GLU LYS VAL LEU GLY ILE ASN LEU SEQRES 13 C 164 GLU ASP PHE ILE ALA VAL ILE GLN SEQRES 1 D 164 MET LYS GLU ILE LYS LEU ILE LEU THR ASP ILE ASP GLY SEQRES 2 D 164 VAL TRP THR ASP GLY GLY MET PHE TYR ASP GLN THR GLY SEQRES 3 D 164 ASN GLU TRP LYS LYS PHE ASN THR SER ASP SER ALA GLY SEQRES 4 D 164 ILE PHE TRP ALA HIS ASN LYS GLY ILE PRO VAL GLY ILE SEQRES 5 D 164 LEU THR GLY GLU LYS THR GLU ILE VAL ARG ARG ARG ALA SEQRES 6 D 164 GLU LYS LEU LYS VAL ASP TYR LEU PHE GLN GLY VAL VAL SEQRES 7 D 164 ASP LYS LEU SER ALA ALA GLU GLU LEU CYS ASN GLU LEU SEQRES 8 D 164 GLY ILE ASN LEU GLU GLN VAL ALA TYR ILE GLY ASP ASP SEQRES 9 D 164 LEU ASN ASP ALA LYS LEU LEU LYS ARG VAL GLY ILE ALA SEQRES 10 D 164 GLY VAL PRO ALA SER ALA PRO PHE TYR ILE ARG ARG LEU SEQRES 11 D 164 SER THR ILE PHE LEU GLU LYS ARG GLY GLY GLU GLY VAL SEQRES 12 D 164 PHE ARG GLU PHE VAL GLU LYS VAL LEU GLY ILE ASN LEU SEQRES 13 D 164 GLU ASP PHE ILE ALA VAL ILE GLN HET MG A 200 1 HET VN4 A 201 4 HET KDN A 202 18 HET MG B 200 1 HET VN4 B 201 4 HET MG C 200 1 HET VN4 C 201 4 HET MG D 201 1 HET VN4 D 202 4 HET KDN D 203 18 HETNAM MG MAGNESIUM ION HETNAM VN4 OXIDO(DIOXO)VANADIUM HETNAM KDN DEAMINO-BETA-NEURAMINIC ACID HETSYN KDN BETA-DEAMINONEURAMINIC ACID; 3-DEOXY-D-GLYCERO-BETA-D- HETSYN 2 KDN GALACTO-NON-2-ULOPYRANOSONIC ACID; SIALIC ACID FORMUL 5 MG 4(MG 2+) FORMUL 6 VN4 4(O3 V 1-) FORMUL 7 KDN 2(C9 H16 O9) FORMUL 15 HOH *176(H2 O) HELIX 1 1 ASP A 36 LYS A 46 1 11 HELIX 2 2 THR A 58 LEU A 68 1 11 HELIX 3 3 ASP A 79 GLY A 92 1 14 HELIX 4 4 ASN A 94 GLU A 96 5 3 HELIX 5 5 ASP A 104 ASN A 106 5 3 HELIX 6 6 ASP A 107 LYS A 112 1 6 HELIX 7 7 PRO A 124 ARG A 129 1 6 HELIX 8 8 GLY A 142 LEU A 152 1 11 HELIX 9 9 ASN A 155 ILE A 163 1 9 HELIX 10 10 ASP B 36 LYS B 46 1 11 HELIX 11 11 THR B 58 LEU B 68 1 11 HELIX 12 12 ASP B 79 GLY B 92 1 14 HELIX 13 13 ASN B 94 GLU B 96 5 3 HELIX 14 14 ASP B 104 ASN B 106 5 3 HELIX 15 15 ASP B 107 VAL B 114 1 8 HELIX 16 16 PRO B 124 ARG B 129 1 6 HELIX 17 17 GLY B 142 LEU B 152 1 11 HELIX 18 18 ASN B 155 VAL B 162 1 8 HELIX 19 19 ASP C 36 LYS C 46 1 11 HELIX 20 20 THR C 58 LEU C 68 1 11 HELIX 21 21 ASP C 79 GLY C 92 1 14 HELIX 22 22 ASN C 94 GLU C 96 5 3 HELIX 23 23 ASP C 104 ASN C 106 5 3 HELIX 24 24 ASP C 107 LYS C 112 1 6 HELIX 25 25 PRO C 124 ARG C 129 1 6 HELIX 26 26 GLY C 142 LEU C 152 1 11 HELIX 27 27 ASN C 155 ILE C 163 1 9 HELIX 28 28 ASP D 36 LYS D 46 1 11 HELIX 29 29 THR D 58 LYS D 69 1 12 HELIX 30 30 ASP D 79 GLY D 92 1 14 HELIX 31 31 ASN D 94 GLU D 96 5 3 HELIX 32 32 ASP D 104 ASN D 106 5 3 HELIX 33 33 ASP D 107 LYS D 112 1 6 HELIX 34 34 PRO D 124 ARG D 129 1 6 HELIX 35 35 GLY D 142 GLY D 153 1 12 HELIX 36 36 ASN D 155 ILE D 163 1 9 SHEET 1 A 5 TYR A 72 PHE A 74 0 SHEET 2 A 5 VAL A 50 LEU A 53 1 N ILE A 52 O TYR A 72 SHEET 3 A 5 LEU A 6 THR A 9 1 N THR A 9 O LEU A 53 SHEET 4 A 5 VAL A 98 ILE A 101 1 O ALA A 99 N LEU A 8 SHEET 5 A 5 ILE A 116 GLY A 118 1 O ILE A 116 N TYR A 100 SHEET 1 B 9 GLY A 19 TYR A 22 0 SHEET 2 B 9 GLU A 28 ASN A 33 -1 O TRP A 29 N PHE A 21 SHEET 3 B 9 GLY C 19 ASP C 23 -1 O MET C 20 N PHE A 32 SHEET 4 B 9 GLU C 28 ASN C 33 -1 O TRP C 29 N PHE C 21 SHEET 5 B 9 GLY D 19 TYR D 22 -1 O MET D 20 N PHE C 32 SHEET 6 B 9 GLU D 28 ASN D 33 -1 O TRP D 29 N PHE D 21 SHEET 7 B 9 GLY B 19 TYR B 22 -1 N MET B 20 O PHE D 32 SHEET 8 B 9 GLU B 28 ASN B 33 -1 O TRP B 29 N PHE B 21 SHEET 9 B 9 GLY A 19 TYR A 22 -1 N MET A 20 O PHE B 32 SHEET 1 C 5 TYR B 72 PHE B 74 0 SHEET 2 C 5 VAL B 50 LEU B 53 1 N ILE B 52 O TYR B 72 SHEET 3 C 5 LEU B 6 THR B 9 1 N ILE B 7 O GLY B 51 SHEET 4 C 5 VAL B 98 ILE B 101 1 O ALA B 99 N LEU B 8 SHEET 5 C 5 ILE B 116 GLY B 118 1 O GLY B 118 N TYR B 100 SHEET 1 D 5 TYR C 72 PHE C 74 0 SHEET 2 D 5 VAL C 50 LEU C 53 1 N ILE C 52 O PHE C 74 SHEET 3 D 5 LEU C 6 THR C 9 1 N ILE C 7 O GLY C 51 SHEET 4 D 5 VAL C 98 ILE C 101 1 O ALA C 99 N LEU C 8 SHEET 5 D 5 ILE C 116 GLY C 118 1 O GLY C 118 N TYR C 100 SHEET 1 E 5 TYR D 72 PHE D 74 0 SHEET 2 E 5 VAL D 50 LEU D 53 1 N ILE D 52 O TYR D 72 SHEET 3 E 5 LEU D 6 THR D 9 1 N ILE D 7 O GLY D 51 SHEET 4 E 5 VAL D 98 ILE D 101 1 O ALA D 99 N LEU D 8 SHEET 5 E 5 ILE D 116 GLY D 118 1 O GLY D 118 N TYR D 100 LINK OD1 ASP A 10 MG MG A 200 1555 1555 2.16 LINK OD2 ASP A 10 V VN4 A 201 1555 1555 2.19 LINK O ASP A 12 MG MG A 200 1555 1555 2.05 LINK OD1 ASP A 103 MG MG A 200 1555 1555 2.07 LINK MG MG A 200 O1 VN4 A 201 1555 1555 1.96 LINK MG MG A 200 O HOH A 337 1555 1555 2.07 LINK MG MG A 200 O HOH A 338 1555 1555 2.15 LINK V VN4 A 201 O9 KDN A 202 1555 1555 2.54 LINK OD1 ASP B 10 MG MG B 200 1555 1555 2.00 LINK OD2 ASP B 10 V VN4 B 201 1555 1555 2.17 LINK O ASP B 12 MG MG B 200 1555 1555 2.00 LINK OD1 ASP B 103 MG MG B 200 1555 1555 2.01 LINK MG MG B 200 O2 VN4 B 201 1555 1555 1.82 LINK MG MG B 200 O HOH B 347 1555 1555 2.11 LINK MG MG B 200 O HOH B 348 1555 1555 2.24 LINK V VN4 B 201 O9 KDN D 203 1555 1555 2.47 LINK OD1 ASP C 10 MG MG C 200 1555 1555 2.20 LINK OD2 ASP C 10 V VN4 C 201 1555 1555 2.19 LINK O ASP C 12 MG MG C 200 1555 1555 2.06 LINK OD1 ASP C 103 MG MG C 200 1555 1555 2.08 LINK MG MG C 200 O1 VN4 C 201 1555 1555 1.96 LINK MG MG C 200 O HOH C 329 1555 1555 2.07 LINK MG MG C 200 O HOH C 330 1555 1555 2.26 LINK OD2 ASP D 10 MG MG D 201 1555 1555 1.97 LINK OD1 ASP D 10 V VN4 D 202 1555 1555 2.35 LINK O ASP D 12 MG MG D 201 1555 1555 2.10 LINK OD1 ASP D 103 MG MG D 201 1555 1555 2.06 LINK MG MG D 201 O2 VN4 D 202 1555 1555 1.97 LINK MG MG D 201 O HOH D 325 1555 1555 2.12 LINK MG MG D 201 O HOH D 326 1555 1555 2.22 CRYST1 81.296 106.324 74.147 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013487 0.00000