HEADER PROTEIN BINDING 09-OCT-12 4HH6 TITLE PEPTIDE FROM EAEC T6SS SCI1 SCII PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TYPE VI SECRETION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-159; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE FROM EAEC T6SS SCI1 SCII PROTEIN; COMPND 8 CHAIN: Z; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 216592; SOURCE 4 STRAIN: EAEC 042; SOURCE 5 GENE: CLPV1 FROM SCI1 T6SS, EC042_4530; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG20A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS ALPHA HELICAL PROTEIN, ATPASE DOMAIN + SCII PEPTIDE, SCII, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.DOUZI,S.SPINELLI,P.LEGRAND,V.LENSI,Y.R.BRUNET,E.CASCALES, AUTHOR 2 C.CAMBILLAU REVDAT 4 20-SEP-23 4HH6 1 SEQADV REVDAT 3 15-NOV-17 4HH6 1 REMARK REVDAT 2 03-DEC-14 4HH6 1 AUTHOR REVDAT 1 20-NOV-13 4HH6 0 JRNL AUTH B.DOUZI,S.SPINELLI,P.LEGRAND,V.LENSI,Y.R.BRUNET,E.CASCALES, JRNL AUTH 2 C.CAMBILLAU JRNL TITL ROLE AND SPECIFICITY OF CLPV ATPASES IN T6SS SECRETION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 5359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.630 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1491 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2855 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1358 REMARK 3 BIN R VALUE (WORKING SET) : 0.2818 REMARK 3 BIN FREE R VALUE : 0.3215 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.78970 REMARK 3 B22 (A**2) : 12.40640 REMARK 3 B33 (A**2) : 4.38330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.420 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 2.770 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1323 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1804 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 442 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 30 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 193 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1323 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 172 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1558 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.36 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 26.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { Z|10 - Z|23 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.3370 14.9064 -15.1718 REMARK 3 T TENSOR REMARK 3 T11: 0.0010 T22: -0.0006 REMARK 3 T33: 0.0011 T12: 0.0023 REMARK 3 T13: -0.0002 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0079 L22: 0.0179 REMARK 3 L33: 0.0035 L12: -0.0193 REMARK 3 L13: 0.0108 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0001 REMARK 3 S21: 0.0001 S22: 0.0001 S23: 0.0003 REMARK 3 S31: 0.0000 S32: -0.0005 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|6 - A|10 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.8270 6.2325 -23.7220 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: -0.0002 REMARK 3 T33: 0.0004 T12: 0.0009 REMARK 3 T13: -0.0008 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 0.0000 REMARK 3 L33: 0.0016 L12: -0.0030 REMARK 3 L13: 0.0014 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0001 S13: -0.0001 REMARK 3 S21: -0.0002 S22: 0.0001 S23: -0.0001 REMARK 3 S31: 0.0001 S32: 0.0000 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|11 - A|20 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.7801 5.4389 -12.3999 REMARK 3 T TENSOR REMARK 3 T11: -0.0020 T22: 0.0006 REMARK 3 T33: 0.0005 T12: 0.0015 REMARK 3 T13: 0.0000 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0015 L12: -0.0170 REMARK 3 L13: 0.0078 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0001 S13: 0.0001 REMARK 3 S21: -0.0003 S22: -0.0001 S23: 0.0011 REMARK 3 S31: 0.0000 S32: -0.0004 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|21 - A|30 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.6859 13.7061 -7.6160 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: -0.0018 REMARK 3 T33: 0.0002 T12: 0.0012 REMARK 3 T13: 0.0003 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.0014 REMARK 3 L13: -0.0060 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0001 S13: 0.0003 REMARK 3 S21: 0.0002 S22: -0.0001 S23: 0.0003 REMARK 3 S31: -0.0005 S32: 0.0000 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|31 - A|40 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.0180 15.1234 -11.3366 REMARK 3 T TENSOR REMARK 3 T11: -0.0007 T22: -0.0010 REMARK 3 T33: -0.0002 T12: -0.0051 REMARK 3 T13: -0.0034 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0119 REMARK 3 L13: 0.0229 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0001 S13: 0.0003 REMARK 3 S21: 0.0000 S22: 0.0000 S23: -0.0001 REMARK 3 S31: -0.0009 S32: 0.0002 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|41 - A|50 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.0609 7.0175 -4.8150 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: -0.0007 REMARK 3 T33: 0.0005 T12: -0.0003 REMARK 3 T13: -0.0024 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0032 REMARK 3 L33: 0.0000 L12: -0.0059 REMARK 3 L13: 0.0092 L23: -0.0066 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0002 S13: 0.0002 REMARK 3 S21: 0.0003 S22: 0.0006 S23: 0.0002 REMARK 3 S31: -0.0008 S32: 0.0006 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|51 - A|60 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.8915 -3.0665 1.6568 REMARK 3 T TENSOR REMARK 3 T11: 0.0019 T22: 0.0000 REMARK 3 T33: -0.0011 T12: 0.0012 REMARK 3 T13: 0.0009 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0022 L22: 0.0000 REMARK 3 L33: 0.0078 L12: 0.0003 REMARK 3 L13: 0.0118 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0005 S13: 0.0006 REMARK 3 S21: 0.0001 S22: -0.0001 S23: 0.0000 REMARK 3 S31: -0.0002 S32: -0.0003 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|61 - A|70 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.2110 -2.9633 2.9961 REMARK 3 T TENSOR REMARK 3 T11: 0.0013 T22: -0.0003 REMARK 3 T33: 0.0003 T12: 0.0007 REMARK 3 T13: -0.0017 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0172 L22: 0.0068 REMARK 3 L33: 0.0160 L12: -0.0199 REMARK 3 L13: 0.0210 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0000 S13: -0.0006 REMARK 3 S21: 0.0001 S22: 0.0001 S23: 0.0004 REMARK 3 S31: 0.0002 S32: 0.0004 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|71 - A|80 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.1567 9.6306 -5.2771 REMARK 3 T TENSOR REMARK 3 T11: -0.0012 T22: 0.0002 REMARK 3 T33: -0.0007 T12: -0.0035 REMARK 3 T13: -0.0024 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0105 REMARK 3 L13: 0.0055 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0002 S13: 0.0002 REMARK 3 S21: -0.0001 S22: 0.0000 S23: -0.0005 REMARK 3 S31: -0.0001 S32: 0.0004 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|81 - A|90 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.7190 19.4432 -14.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.0013 T22: -0.0004 REMARK 3 T33: -0.0005 T12: -0.0023 REMARK 3 T13: 0.0009 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0051 L12: 0.0225 REMARK 3 L13: -0.0034 L23: -0.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0004 S13: 0.0006 REMARK 3 S21: -0.0002 S22: 0.0001 S23: -0.0004 REMARK 3 S31: 0.0001 S32: 0.0004 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|91 - A|100 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.8959 2.9194 -18.7887 REMARK 3 T TENSOR REMARK 3 T11: -0.0005 T22: 0.0013 REMARK 3 T33: -0.0017 T12: -0.0008 REMARK 3 T13: 0.0001 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0001 REMARK 3 L33: 0.0055 L12: 0.0004 REMARK 3 L13: 0.0022 L23: 0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0004 S13: 0.0001 REMARK 3 S21: -0.0003 S22: -0.0002 S23: 0.0001 REMARK 3 S31: -0.0002 S32: 0.0000 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|101 - A|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.4776 -6.2016 -16.3695 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: -0.0006 REMARK 3 T33: -0.0012 T12: -0.0034 REMARK 3 T13: -0.0009 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0088 REMARK 3 L13: 0.0073 L23: 0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0006 S13: 0.0001 REMARK 3 S21: 0.0000 S22: -0.0002 S23: 0.0000 REMARK 3 S31: 0.0003 S32: -0.0001 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { A|111 - A|120 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.6475 -2.6240 -10.4828 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: -0.0007 REMARK 3 T33: 0.0001 T12: 0.0013 REMARK 3 T13: 0.0016 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0104 REMARK 3 L33: 0.0024 L12: -0.0032 REMARK 3 L13: -0.0099 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0002 S13: -0.0002 REMARK 3 S21: -0.0002 S22: -0.0005 S23: 0.0007 REMARK 3 S31: 0.0000 S32: -0.0003 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: { A|121 - A|130 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.5703 -3.5137 -13.9736 REMARK 3 T TENSOR REMARK 3 T11: -0.0001 T22: 0.0010 REMARK 3 T33: -0.0009 T12: 0.0013 REMARK 3 T13: 0.0011 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0009 L22: 0.0029 REMARK 3 L33: 0.0023 L12: -0.0015 REMARK 3 L13: -0.0050 L23: 0.0017 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0001 S13: 0.0000 REMARK 3 S21: 0.0000 S22: -0.0001 S23: -0.0002 REMARK 3 S31: 0.0001 S32: 0.0003 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: { A|131 - A|140 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.8643 -4.8495 -4.8736 REMARK 3 T TENSOR REMARK 3 T11: -0.0003 T22: 0.0010 REMARK 3 T33: -0.0001 T12: 0.0025 REMARK 3 T13: -0.0024 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: 0.0053 REMARK 3 L33: 0.0000 L12: -0.0093 REMARK 3 L13: 0.0132 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0002 S13: -0.0002 REMARK 3 S21: 0.0000 S22: -0.0002 S23: -0.0001 REMARK 3 S31: 0.0006 S32: 0.0003 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: { A|141 - A|150 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.4859 -13.7484 -6.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: -0.0004 REMARK 3 T33: 0.0010 T12: -0.0002 REMARK 3 T13: 0.0016 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0043 L22: 0.0122 REMARK 3 L33: 0.0000 L12: -0.0029 REMARK 3 L13: -0.0001 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0003 S13: -0.0001 REMARK 3 S21: 0.0000 S22: -0.0001 S23: 0.0003 REMARK 3 S31: 0.0004 S32: -0.0003 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: { A|151 - A|162 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.1502 -3.6331 -0.0494 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0016 REMARK 3 T33: 0.0011 T12: 0.0002 REMARK 3 T13: 0.0012 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0029 L22: 0.0165 REMARK 3 L33: 0.0195 L12: 0.0190 REMARK 3 L13: -0.0192 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0004 REMARK 3 S21: -0.0001 S22: -0.0002 S23: 0.0016 REMARK 3 S31: 0.0002 S32: -0.0018 S33: 0.0002 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4HH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS, 100MM NACL, 5%GLYC ROL 10MM REMARK 280 SODIUM BORATE PH 8.5, 1M CITRATE, PROTEIN+PEPTIDE 2MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 VAL A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 MET A 5 REMARK 465 LEU A 163 REMARK 465 LYS Z 8 REMARK 465 LYS Z 9 REMARK 465 LYS Z 24 REMARK 465 LYS Z 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 GLU A 52 CD OE1 OE2 REMARK 470 ARG A 61 CZ NH1 NH2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 GLN A 71 CG CD OE1 NE2 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 GLN A 92 CD OE1 NE2 REMARK 470 LYS A 99 CE NZ REMARK 470 MET A 103 CG SD CE REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 TRP Z 10 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP Z 10 CZ3 CH2 REMARK 470 ASP Z 11 OD2 REMARK 470 VAL Z 13 CG1 CG2 REMARK 470 ILE Z 21 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 35 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU A 161 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 35 72.48 78.71 REMARK 500 GLN A 50 -71.82 -71.20 REMARK 500 GLU A 52 67.05 -117.30 REMARK 500 ASP A 63 76.70 58.58 REMARK 500 SER A 83 -92.68 -131.24 REMARK 500 SER A 86 -100.76 -108.10 REMARK 500 GLU A 161 -73.03 -25.07 REMARK 500 GLU Z 19 -12.78 -44.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 51 13.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN Z OF PEPTIDE FROM EAEC REMARK 800 T6SS SCI1 SCII PROTEIN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HH5 RELATED DB: PDB DBREF 4HH6 A 5 163 UNP D3GUW1 D3GUW1_ECO44 1 159 DBREF 4HH6 Z 8 25 PDB 4HH6 4HH6 8 25 SEQADV 4HH6 GLY A 1 UNP D3GUW1 EXPRESSION TAG SEQADV 4HH6 VAL A 2 UNP D3GUW1 EXPRESSION TAG SEQADV 4HH6 ASN A 3 UNP D3GUW1 EXPRESSION TAG SEQADV 4HH6 ASN A 4 UNP D3GUW1 EXPRESSION TAG SEQRES 1 A 163 GLY VAL ASN ASN MET GLU ASN SER ALA ALA LEU LEU ARG SEQRES 2 A 163 ARG LEU ASN HIS TYR CYS ALA ARG ALA LEU GLU GLY ALA SEQRES 3 A 163 ALA SER LEU CYS GLN THR ARG ALA HIS ALA GLU ILE THR SEQRES 4 A 163 PRO GLU HIS TRP LEU LEU LYS LEU LEU GLU GLN GLY GLU SEQRES 5 A 163 GLY ASP LEU THR VAL LEU GLY ARG ARG TYR ASP TRP ASP SEQRES 6 A 163 MET ASP ALA ILE TRP GLN SER LEU LEU GLY TRP LEU ASP SEQRES 7 A 163 ASN GLN PRO ARG SER VAL ARG SER ARG PRO GLN LEU ALA SEQRES 8 A 163 GLN SER LEU ASN ALA LEU LEU LYS GLN ALA TRP MET VAL SEQRES 9 A 163 ALA SER LEU GLN GLY GLU GLU HIS ILE ARG SER VAL HIS SEQRES 10 A 163 LEU LEU GLY ALA LEU THR GLU ASN PRO HIS LEU VAL ARG SEQRES 11 A 163 CYS ASP GLY LEU TRP PRO LEU LEU THR LEU SER GLN SER SEQRES 12 A 163 GLN LEU GLN ARG LEU SER PRO LEU LEU ASP ALA GLN SER SEQRES 13 A 163 ASP GLU CYS PRO GLU THR LEU SEQRES 1 Z 18 LYS LYS TRP ASP SER VAL TYR ALA SER LEU PHE GLU LYS SEQRES 2 Z 18 ILE ASN LEU LYS LYS FORMUL 3 HOH *26(H2 O) HELIX 1 1 ASN A 7 ARG A 13 1 7 HELIX 2 2 ASN A 16 ALA A 34 1 19 HELIX 3 3 THR A 39 GLY A 51 1 13 HELIX 4 4 GLY A 53 ASP A 63 1 11 HELIX 5 5 ASP A 65 ASN A 79 1 15 HELIX 6 6 ALA A 91 GLN A 108 1 18 HELIX 7 7 ARG A 114 ASN A 125 1 12 HELIX 8 8 CYS A 131 THR A 139 5 9 HELIX 9 9 SER A 141 LEU A 148 1 8 HELIX 10 10 LEU A 148 SER A 156 1 9 HELIX 11 11 ASP Z 11 GLU Z 19 1 9 SHEET 1 A 2 GLU A 37 ILE A 38 0 SHEET 2 A 2 GLN A 89 LEU A 90 1 O GLN A 89 N ILE A 38 CISPEP 1 GLU A 6 ASN A 7 0 -10.58 CISPEP 2 ALA A 34 HIS A 35 0 9.59 SITE 1 AC1 12 ALA A 9 ARG A 13 ARG A 14 LEU A 15 SITE 2 AC1 12 HIS A 17 ALA A 20 GLU A 24 ARG A 87 SITE 3 AC1 12 PRO A 88 GLN A 89 SER A 106 LEU A 107 CRYST1 40.920 46.850 75.530 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013240 0.00000