data_4HIV # _entry.id 4HIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HIV pdb_00004hiv 10.2210/pdb4hiv/pdb NDB NA2074 ? ? RCSB RCSB075520 ? ? WWPDB D_1000075520 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2013-05-15 3 'Structure model' 2 0 2023-11-15 4 'Structure model' 3 0 2024-07-10 5 'Structure model' 3 1 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' Advisory 5 3 'Structure model' 'Atomic model' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Non-polymer description' 12 4 'Structure model' 'Structure summary' 13 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_validate_polymer_linkage 6 3 'Structure model' struct_conn 7 4 'Structure model' chem_comp 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' entity 11 4 'Structure model' struct_conn 12 5 'Structure model' pdbx_entry_details 13 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 11 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 13 4 'Structure model' '_chem_comp.formula' 14 4 'Structure model' '_chem_comp.formula_weight' 15 4 'Structure model' '_entity.formula_weight' 16 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 5 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HIV _pdbx_database_status.recvd_initial_deposition_date 2012-10-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lo, Y.S.' 1 'Tseng, W.H.' 2 'Hou, M.H.' 3 # _citation.id primary _citation.title ;The structural basis of actinomycin D-binding induces nucleotide flipping out, a sharp bend and a left-handed twist in CGG triplet repeats. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 4284 _citation.page_last 4294 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23408860 _citation.pdbx_database_id_DOI 10.1093/nar/gkt084 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lo, Y.S.' 1 ? primary 'Tseng, W.H.' 2 ? primary 'Chuang, C.Y.' 3 ? primary 'Hou, M.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*TP*GP*CP*GP*GP*CP*AP*T)-3') ; 2755.823 2 ? ? ? ? 2 polymer nat 'ACTINOMYCIN D' 1291.446 2 ? ? ? ? 3 water nat water 18.015 133 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DC)(DG)(DG)(DC)(DA)(DT)' ATGCGGCAT A,B ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV C,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DC n 1 8 DA n 1 9 DT n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PXZ n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces antibioticus' _entity_src_nat.pdbx_ncbi_taxonomy_id 1890 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n B 1 1 DA 1 10 10 DA DA B . n B 1 2 DT 2 11 11 DT DT B . n B 1 3 DG 3 12 12 DG DG B . n B 1 4 DC 4 13 13 DC DC B . n B 1 5 DG 5 14 14 DG DG B . n B 1 6 DG 6 15 15 DG DG B . n B 1 7 DC 7 16 16 DC DC B . n B 1 8 DA 8 17 17 DA DA B . n B 1 9 DT 9 18 18 DT DT B . n C 2 1 THR 1 1 1 THR THR C . n C 2 2 DVA 2 2 2 DVA DVA C . n C 2 3 PRO 3 3 3 PRO PRO C . n C 2 4 SAR 4 4 4 SAR SAR C . n C 2 5 MVA 5 5 5 MVA MVA C . n C 2 6 PXZ 6 6 6 PXZ PXZ C . n C 2 7 THR 7 7 7 THR THR C . n C 2 8 DVA 8 8 8 DVA DVA C . n C 2 9 PRO 9 9 9 PRO PRO C . n C 2 10 SAR 10 10 10 SAR SAR C . n C 2 11 MVA 11 11 11 MVA MVA C . n D 2 1 THR 1 1 1 THR THR D . n D 2 2 DVA 2 2 2 DVA DVA D . n D 2 3 PRO 3 3 3 PRO PRO D . n D 2 4 SAR 4 4 4 SAR SAR D . n D 2 5 MVA 5 5 5 MVA MVA D . n D 2 6 PXZ 6 6 6 PXZ PXZ D . n D 2 7 THR 7 7 7 THR THR D . n D 2 8 DVA 8 8 8 DVA DVA D . n D 2 9 PRO 9 9 9 PRO PRO D . n D 2 10 SAR 10 10 10 SAR SAR D . n D 2 11 MVA 11 11 11 MVA MVA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 101 4 HOH HOH A . E 3 HOH 2 102 7 HOH HOH A . E 3 HOH 3 103 8 HOH HOH A . E 3 HOH 4 104 14 HOH HOH A . E 3 HOH 5 105 17 HOH HOH A . E 3 HOH 6 106 21 HOH HOH A . E 3 HOH 7 107 23 HOH HOH A . E 3 HOH 8 108 30 HOH HOH A . E 3 HOH 9 109 36 HOH HOH A . E 3 HOH 10 110 52 HOH HOH A . E 3 HOH 11 111 61 HOH HOH A . E 3 HOH 12 112 62 HOH HOH A . E 3 HOH 13 113 63 HOH HOH A . E 3 HOH 14 114 64 HOH HOH A . E 3 HOH 15 115 75 HOH HOH A . E 3 HOH 16 116 78 HOH HOH A . E 3 HOH 17 117 80 HOH HOH A . E 3 HOH 18 118 83 HOH HOH A . E 3 HOH 19 119 86 HOH HOH A . E 3 HOH 20 120 99 HOH HOH A . E 3 HOH 21 121 100 HOH HOH A . E 3 HOH 22 122 104 HOH HOH A . E 3 HOH 23 123 105 HOH HOH A . E 3 HOH 24 124 106 HOH HOH A . E 3 HOH 25 125 110 HOH HOH A . E 3 HOH 26 126 111 HOH HOH A . E 3 HOH 27 127 112 HOH HOH A . E 3 HOH 28 128 114 HOH HOH A . E 3 HOH 29 129 117 HOH HOH A . E 3 HOH 30 130 118 HOH HOH A . E 3 HOH 31 131 120 HOH HOH A . E 3 HOH 32 132 128 HOH HOH A . E 3 HOH 33 133 130 HOH HOH A . E 3 HOH 34 134 132 HOH HOH A . E 3 HOH 35 135 65 HOH HOH A . F 3 HOH 1 101 1 HOH HOH B . F 3 HOH 2 102 3 HOH HOH B . F 3 HOH 3 103 5 HOH HOH B . F 3 HOH 4 104 6 HOH HOH B . F 3 HOH 5 105 10 HOH HOH B . F 3 HOH 6 106 12 HOH HOH B . F 3 HOH 7 107 13 HOH HOH B . F 3 HOH 8 108 15 HOH HOH B . F 3 HOH 9 109 28 HOH HOH B . F 3 HOH 10 110 29 HOH HOH B . F 3 HOH 11 111 34 HOH HOH B . F 3 HOH 12 112 44 HOH HOH B . F 3 HOH 13 113 45 HOH HOH B . F 3 HOH 14 114 59 HOH HOH B . F 3 HOH 15 115 76 HOH HOH B . F 3 HOH 16 116 82 HOH HOH B . F 3 HOH 17 117 87 HOH HOH B . F 3 HOH 18 118 88 HOH HOH B . F 3 HOH 19 119 90 HOH HOH B . F 3 HOH 20 120 97 HOH HOH B . F 3 HOH 21 121 121 HOH HOH B . F 3 HOH 22 122 123 HOH HOH B . F 3 HOH 23 123 125 HOH HOH B . G 3 HOH 1 101 9 HOH HOH C . G 3 HOH 2 102 11 HOH HOH C . G 3 HOH 3 103 16 HOH HOH C . G 3 HOH 4 104 18 HOH HOH C . G 3 HOH 5 105 20 HOH HOH C . G 3 HOH 6 106 22 HOH HOH C . G 3 HOH 7 107 24 HOH HOH C . G 3 HOH 8 108 25 HOH HOH C . G 3 HOH 9 109 26 HOH HOH C . G 3 HOH 10 110 27 HOH HOH C . G 3 HOH 11 111 31 HOH HOH C . G 3 HOH 12 112 32 HOH HOH C . G 3 HOH 13 113 33 HOH HOH C . G 3 HOH 14 114 35 HOH HOH C . G 3 HOH 15 115 37 HOH HOH C . G 3 HOH 16 116 38 HOH HOH C . G 3 HOH 17 117 39 HOH HOH C . G 3 HOH 18 118 40 HOH HOH C . G 3 HOH 19 119 41 HOH HOH C . G 3 HOH 20 120 42 HOH HOH C . G 3 HOH 21 121 43 HOH HOH C . G 3 HOH 22 122 46 HOH HOH C . G 3 HOH 23 123 47 HOH HOH C . G 3 HOH 24 124 48 HOH HOH C . G 3 HOH 25 125 49 HOH HOH C . G 3 HOH 26 126 50 HOH HOH C . G 3 HOH 27 127 51 HOH HOH C . G 3 HOH 28 128 53 HOH HOH C . G 3 HOH 29 129 54 HOH HOH C . G 3 HOH 30 130 55 HOH HOH C . G 3 HOH 31 131 56 HOH HOH C . G 3 HOH 32 132 57 HOH HOH C . G 3 HOH 33 133 58 HOH HOH C . G 3 HOH 34 134 60 HOH HOH C . G 3 HOH 35 135 66 HOH HOH C . G 3 HOH 36 136 67 HOH HOH C . G 3 HOH 37 137 68 HOH HOH C . G 3 HOH 38 138 69 HOH HOH C . G 3 HOH 39 139 70 HOH HOH C . G 3 HOH 40 140 71 HOH HOH C . G 3 HOH 41 141 72 HOH HOH C . G 3 HOH 42 142 73 HOH HOH C . G 3 HOH 43 143 74 HOH HOH C . G 3 HOH 44 144 77 HOH HOH C . G 3 HOH 45 145 79 HOH HOH C . G 3 HOH 46 146 81 HOH HOH C . G 3 HOH 47 147 84 HOH HOH C . G 3 HOH 48 148 85 HOH HOH C . G 3 HOH 49 149 89 HOH HOH C . G 3 HOH 50 150 91 HOH HOH C . G 3 HOH 51 151 92 HOH HOH C . G 3 HOH 52 152 93 HOH HOH C . G 3 HOH 53 153 94 HOH HOH C . G 3 HOH 54 154 95 HOH HOH C . G 3 HOH 55 155 96 HOH HOH C . G 3 HOH 56 156 98 HOH HOH C . G 3 HOH 57 157 101 HOH HOH C . G 3 HOH 58 158 102 HOH HOH C . G 3 HOH 59 159 103 HOH HOH C . G 3 HOH 60 160 107 HOH HOH C . G 3 HOH 61 161 108 HOH HOH C . G 3 HOH 62 162 109 HOH HOH C . G 3 HOH 63 163 113 HOH HOH C . G 3 HOH 64 164 116 HOH HOH C . G 3 HOH 65 165 119 HOH HOH C . G 3 HOH 66 166 122 HOH HOH C . G 3 HOH 67 167 126 HOH HOH C . G 3 HOH 68 168 127 HOH HOH C . G 3 HOH 69 169 129 HOH HOH C . G 3 HOH 70 170 131 HOH HOH C . G 3 HOH 71 171 133 HOH HOH C . G 3 HOH 72 172 115 HOH HOH C . H 3 HOH 1 101 2 HOH HOH D . H 3 HOH 2 102 19 HOH HOH D . H 3 HOH 3 103 124 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 4HIV _cell.length_a 86.936 _cell.length_b 86.936 _cell.length_c 49.778 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HIV _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4HIV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.38 _exptl_crystal.density_percent_sol 63.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;40mM sodium cacodylate, 3mM magnesium chloride, 5mM calcium chloride, 10mM spermine, 8% MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K ; # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-07-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2-Cooled, Fixed-Exit Double Crystal Monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9062 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9062 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4HIV _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.6 _reflns.number_obs 4378 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 54.205 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.6 2.69 100 ? ? 4.11 13.8 ? ? ? ? ? ? 1 2 2.69 2.8 100 ? ? 7.19 13.8 ? ? ? ? ? ? 1 3 2.8 2.93 100 ? ? 9.86 13.8 ? ? ? ? ? ? 1 4 2.93 3.08 100 ? ? 17.89 13.9 ? ? ? ? ? ? 1 5 3.08 3.28 100 ? ? 34.21 13.5 ? ? ? ? ? ? 1 6 3.28 3.53 100 ? ? 59.9 13.6 ? ? ? ? ? ? 1 7 3.53 3.88 100 ? ? 54.24 13.2 ? ? ? ? ? ? 1 8 3.88 4.44 100 ? ? 48.8 12.9 ? ? ? ? ? ? 1 9 4.44 5.59 99.7 ? ? 64.6 12.4 ? ? ? ? ? ? 1 10 5.59 30 98.8 ? ? 90.7 11.3 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4HIV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4378 _refine.ls_number_reflns_all 6495 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.26 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.26 _refine.ls_R_factor_R_free 0.29 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 181 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.299 _refine.aniso_B[2][2] 1.299 _refine.aniso_B[3][3] -2.598 _refine.aniso_B[1][2] 1.151 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4HIV _refine_analyze.Luzzati_coordinate_error_obs 0.42 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.47 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 180 _refine_hist.pdbx_number_atoms_nucleic_acid 366 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 679 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004705 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.408 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6 2.72 . 0.420 7.4 0.09 0.045 . 4 . . . . 'X-RAY DIFFRACTION' . 2.72 2.86 . 0.349 15.4 0.307 0.097 . 10 . . . . 'X-RAY DIFFRACTION' . 2.86 3.04 . 0.302 25.6 0.431 0.125 . 12 . . . . 'X-RAY DIFFRACTION' . 3.04 3.28 . 0.305 44.2 0.268 0.048 . 31 . . . . 'X-RAY DIFFRACTION' . 3.28 3.60 . 0.279 62.1 0.299 0.047 . 41 . . . . 'X-RAY DIFFRACTION' . 3.60 4.12 . 0.303 74.8 0.329 0.045 . 53 . . . . 'X-RAY DIFFRACTION' . 4.12 5.19 . 0.280 87.1 0.303 0.033 . 85 . . . . 'X-RAY DIFFRACTION' . 5.19 25.10 . 0.437 96.0 0.419 0.045 . 88 . . . . # _database_PDB_matrix.entry_id 4HIV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4HIV _struct.title 'Structure of actinomycin D d(ATGCGGCAT) complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HIV _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text ;Double helix DNA, Nucleotide flipping-out, sharp kink, left-handed twist, CGG tripleat repeat, Neurological disease, DNA-ANTIBIOTIC complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 4HIV 4HIV 1 ATGCGGCAT ? ? 2 NOR NOR00228 NOR00228 2 TVPGVXTVPGV ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HIV A 1 ? 9 ? 4HIV 1 ? 9 ? 1 9 2 1 4HIV B 1 ? 9 ? 4HIV 10 ? 18 ? 10 18 3 2 4HIV C 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 4 2 4HIV D 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale2 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale3 covale both ? C THR 1 N ? ? ? 1_555 C PXZ 6 C0 ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale4 covale both ? C DVA 2 C ? ? ? 1_555 C PRO 3 N ? ? C DVA 2 C PRO 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? C PRO 3 C ? ? ? 1_555 C SAR 4 N ? ? C PRO 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale6 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale7 covale both ? C PXZ 6 "C0'" ? ? ? 1_555 C THR 7 N ? ? C PXZ 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale8 covale both ? C THR 7 C ? ? ? 1_555 C DVA 8 N ? ? C THR 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale9 covale one ? C THR 7 OG1 ? ? ? 1_555 C MVA 11 C ? ? C THR 7 C MVA 11 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale10 covale both ? C DVA 8 C ? ? ? 1_555 C PRO 9 N ? ? C DVA 8 C PRO 9 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? C PRO 9 C ? ? ? 1_555 C SAR 10 N ? ? C PRO 9 C SAR 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale12 covale both ? C SAR 10 C ? ? ? 1_555 C MVA 11 N ? ? C SAR 10 C MVA 11 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale13 covale both ? D THR 1 C ? ? ? 1_555 D DVA 2 N ? ? D THR 1 D DVA 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale14 covale one ? D THR 1 OG1 ? ? ? 1_555 D MVA 5 C ? ? D THR 1 D MVA 5 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale15 covale both ? D THR 1 N ? ? ? 1_555 D PXZ 6 C0 ? ? D THR 1 D PXZ 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale16 covale both ? D DVA 2 C ? ? ? 1_555 D PRO 3 N ? ? D DVA 2 D PRO 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale17 covale both ? D PRO 3 C ? ? ? 1_555 D SAR 4 N ? ? D PRO 3 D SAR 4 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale18 covale both ? D SAR 4 C ? ? ? 1_555 D MVA 5 N ? ? D SAR 4 D MVA 5 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale19 covale both ? D PXZ 6 "C0'" ? ? ? 1_555 D THR 7 N ? ? D PXZ 6 D THR 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale20 covale both ? D THR 7 C ? ? ? 1_555 D DVA 8 N ? ? D THR 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale21 covale one ? D THR 7 OG1 ? ? ? 1_555 D MVA 11 C ? ? D THR 7 D MVA 11 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale22 covale both ? D DVA 8 C ? ? ? 1_555 D PRO 9 N ? ? D DVA 8 D PRO 9 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale23 covale both ? D PRO 9 C ? ? ? 1_555 D SAR 10 N ? ? D PRO 9 D SAR 10 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale24 covale both ? D SAR 10 C ? ? ? 1_555 D MVA 11 N ? ? D SAR 10 D MVA 11 1_555 ? ? ? ? ? ? ? 1.344 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 1 B DT 18 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog2 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 4 B DG 14 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog9 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DA 1 N1 ? ? A DA 8 B DA 10 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog13 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog14 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 9 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 9 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SAR C 4 ? . . . . SAR C 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 2 MVA C 5 ? . . . . MVA C 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 SAR C 10 ? . . . . SAR C 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 4 MVA C 11 ? . . . . MVA C 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 SAR D 4 ? . . . . SAR D 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 6 MVA D 5 ? . . . . MVA D 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 7 SAR D 10 ? . . . . SAR D 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 8 MVA D 11 ? . . . . MVA D 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 9 PXZ C 6 ? . . . . PXZ C 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 10 PXZ D 6 ? . . . . PXZ D 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 11 THR C 1 ? MVA C 5 ? THR C 1 ? 1_555 MVA C 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 12 THR C 1 ? PXZ C 6 ? THR C 1 ? 1_555 PXZ C 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 13 THR C 7 ? MVA C 11 ? THR C 7 ? 1_555 MVA C 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' 14 THR D 1 ? MVA D 5 ? THR D 1 ? 1_555 MVA D 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 15 THR D 1 ? PXZ D 6 ? THR D 1 ? 1_555 PXZ D 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 16 THR D 7 ? MVA D 11 ? THR D 7 ? 1_555 MVA D 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 1 0.49 2 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 1 1.19 3 DVA 2 D . ? DVA 2 D PRO 3 D ? PRO 3 D 1 0.84 4 PRO 3 D . ? PRO 3 D SAR 4 D ? SAR 4 D 1 0.08 5 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 1 1.75 6 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 1 1.71 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN C OF ACTINOMYCIN D' AC2 Software ? ? ? ? 11 'BINDING SITE FOR CHAIN D OF ACTINOMYCIN D' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DT A 2 ? DT A 2 . ? 1_555 ? 2 AC1 10 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 10 DC A 4 ? DC A 4 . ? 1_555 ? 4 AC1 10 DG B 5 ? DG B 14 . ? 1_555 ? 5 AC1 10 DG B 6 ? DG B 15 . ? 1_555 ? 6 AC1 10 DC B 7 ? DC B 16 . ? 1_555 ? 7 AC1 10 DA B 8 ? DA B 17 . ? 1_555 ? 8 AC1 10 DT B 9 ? DT B 18 . ? 1_555 ? 9 AC1 10 SAR D 4 ? SAR D 4 . ? 1_555 ? 10 AC1 10 MVA D 5 ? MVA D 5 . ? 1_555 ? 11 AC2 11 DC A 4 ? DC A 4 . ? 1_555 ? 12 AC2 11 DG A 5 ? DG A 5 . ? 1_555 ? 13 AC2 11 DG A 6 ? DG A 6 . ? 1_555 ? 14 AC2 11 DC A 7 ? DC A 7 . ? 1_555 ? 15 AC2 11 DA A 8 ? DA A 8 . ? 1_555 ? 16 AC2 11 DT B 2 ? DT B 11 . ? 1_555 ? 17 AC2 11 DG B 3 ? DG B 12 . ? 1_555 ? 18 AC2 11 DC B 4 ? DC B 13 . ? 1_555 ? 19 AC2 11 DVA C 2 ? DVA C 2 . ? 1_555 ? 20 AC2 11 PRO C 9 ? PRO C 9 . ? 1_555 ? 21 AC2 11 SAR C 10 ? SAR C 10 . ? 1_555 ? # _pdbx_entry_details.entry_id 4HIV _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C C DVA 8 ? ? N C PRO 9 ? ? CA C PRO 9 ? ? 129.19 119.30 9.89 1.50 Y 2 1 CA C PRO 9 ? ? N C PRO 9 ? ? CD C PRO 9 ? ? 102.06 111.70 -9.64 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DVA C 2 ? ? -46.20 -132.39 2 1 DVA C 8 ? ? 4.77 -133.96 3 1 DVA D 8 ? ? 46.21 -108.93 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 17 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.053 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 DVA C 2 ? ? 11.50 2 1 DVA C 8 ? ? 10.00 3 1 PRO D 9 ? ? -10.34 # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000001 D 2 PRD_000001 C # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 161 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 DVA N N N N 144 DVA CA C N R 145 DVA CB C N N 146 DVA CG1 C N N 147 DVA CG2 C N N 148 DVA C C N N 149 DVA O O N N 150 DVA OXT O N N 151 DVA H H N N 152 DVA H2 H N N 153 DVA HA H N N 154 DVA HB H N N 155 DVA HG11 H N N 156 DVA HG12 H N N 157 DVA HG13 H N N 158 DVA HG21 H N N 159 DVA HG22 H N N 160 DVA HG23 H N N 161 DVA HXT H N N 162 HOH O O N N 163 HOH H1 H N N 164 HOH H2 H N N 165 MVA N N N N 166 MVA CN C N N 167 MVA CA C N S 168 MVA CB C N N 169 MVA CG1 C N N 170 MVA CG2 C N N 171 MVA C C N N 172 MVA O O N N 173 MVA OXT O N N 174 MVA H H N N 175 MVA HN1 H N N 176 MVA HN2 H N N 177 MVA HN3 H N N 178 MVA HA H N N 179 MVA HB H N N 180 MVA HG11 H N N 181 MVA HG12 H N N 182 MVA HG13 H N N 183 MVA HG21 H N N 184 MVA HG22 H N N 185 MVA HG23 H N N 186 MVA HXT H N N 187 PRO N N N N 188 PRO CA C N S 189 PRO C C N N 190 PRO O O N N 191 PRO CB C N N 192 PRO CG C N N 193 PRO CD C N N 194 PRO OXT O N N 195 PRO H H N N 196 PRO HA H N N 197 PRO HB2 H N N 198 PRO HB3 H N N 199 PRO HG2 H N N 200 PRO HG3 H N N 201 PRO HD2 H N N 202 PRO HD3 H N N 203 PRO HXT H N N 204 PXZ C1 C N N 205 PXZ C0 C N N 206 PXZ O1 O N N 207 PXZ C2 C N N 208 PXZ N2 N N N 209 PXZ C3 C N N 210 PXZ O3 O N N 211 PXZ C4 C N N 212 PXZ O5 O N N 213 PXZ C6 C Y N 214 PXZ C7 C Y N 215 PXZ C8 C Y N 216 PXZ C9 C Y N 217 PXZ "C0'" C N N 218 PXZ "O1'" O N N 219 PXZ N10 N N N 220 PXZ C11 C N N 221 PXZ C12 C N N 222 PXZ C13 C Y N 223 PXZ C14 C Y N 224 PXZ C15 C N N 225 PXZ C16 C N N 226 PXZ HN21 H N N 227 PXZ HN22 H N N 228 PXZ H7 H N N 229 PXZ H8 H N N 230 PXZ H151 H N N 231 PXZ H152 H N N 232 PXZ H153 H N N 233 PXZ H161 H N N 234 PXZ H162 H N N 235 PXZ H163 H N N 236 PXZ "OXT'" O N N 237 PXZ OXT O N N 238 PXZ "HXT'" H N N 239 PXZ HXT H N N 240 SAR N N N N 241 SAR CA C N N 242 SAR C C N N 243 SAR O O N N 244 SAR CN C N N 245 SAR OXT O N N 246 SAR H H N N 247 SAR HA2 H N N 248 SAR HA3 H N N 249 SAR HN1 H N N 250 SAR HN2 H N N 251 SAR HN3 H N N 252 SAR HXT H N N 253 THR N N N N 254 THR CA C N S 255 THR C C N N 256 THR O O N N 257 THR CB C N R 258 THR OG1 O N N 259 THR CG2 C N N 260 THR OXT O N N 261 THR H H N N 262 THR H2 H N N 263 THR HA H N N 264 THR HB H N N 265 THR HG1 H N N 266 THR HG21 H N N 267 THR HG22 H N N 268 THR HG23 H N N 269 THR HXT H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 DVA N CA sing N N 150 DVA N H sing N N 151 DVA N H2 sing N N 152 DVA CA CB sing N N 153 DVA CA C sing N N 154 DVA CA HA sing N N 155 DVA CB CG1 sing N N 156 DVA CB CG2 sing N N 157 DVA CB HB sing N N 158 DVA CG1 HG11 sing N N 159 DVA CG1 HG12 sing N N 160 DVA CG1 HG13 sing N N 161 DVA CG2 HG21 sing N N 162 DVA CG2 HG22 sing N N 163 DVA CG2 HG23 sing N N 164 DVA C O doub N N 165 DVA C OXT sing N N 166 DVA OXT HXT sing N N 167 HOH O H1 sing N N 168 HOH O H2 sing N N 169 MVA N CN sing N N 170 MVA N CA sing N N 171 MVA N H sing N N 172 MVA CN HN1 sing N N 173 MVA CN HN2 sing N N 174 MVA CN HN3 sing N N 175 MVA CA CB sing N N 176 MVA CA C sing N N 177 MVA CA HA sing N N 178 MVA CB CG1 sing N N 179 MVA CB CG2 sing N N 180 MVA CB HB sing N N 181 MVA CG1 HG11 sing N N 182 MVA CG1 HG12 sing N N 183 MVA CG1 HG13 sing N N 184 MVA CG2 HG21 sing N N 185 MVA CG2 HG22 sing N N 186 MVA CG2 HG23 sing N N 187 MVA C O doub N N 188 MVA C OXT sing N N 189 MVA OXT HXT sing N N 190 PRO N CA sing N N 191 PRO N CD sing N N 192 PRO N H sing N N 193 PRO CA C sing N N 194 PRO CA CB sing N N 195 PRO CA HA sing N N 196 PRO C O doub N N 197 PRO C OXT sing N N 198 PRO CB CG sing N N 199 PRO CB HB2 sing N N 200 PRO CB HB3 sing N N 201 PRO CG CD sing N N 202 PRO CG HG2 sing N N 203 PRO CG HG3 sing N N 204 PRO CD HD2 sing N N 205 PRO CD HD3 sing N N 206 PRO OXT HXT sing N N 207 PXZ C1 C0 sing N N 208 PXZ C1 C2 doub N N 209 PXZ C1 C11 sing N N 210 PXZ C0 O1 doub N N 211 PXZ C2 N2 sing N N 212 PXZ C2 C3 sing N N 213 PXZ N2 HN21 sing N N 214 PXZ N2 HN22 sing N N 215 PXZ C3 O3 doub N N 216 PXZ C3 C4 sing N N 217 PXZ C4 C12 doub N N 218 PXZ C4 C15 sing N N 219 PXZ O5 C12 sing N N 220 PXZ O5 C13 sing N N 221 PXZ C6 C7 doub Y N 222 PXZ C6 C13 sing Y N 223 PXZ C6 C16 sing N N 224 PXZ C7 C8 sing Y N 225 PXZ C7 H7 sing N N 226 PXZ C8 C9 doub Y N 227 PXZ C8 H8 sing N N 228 PXZ C9 "C0'" sing N N 229 PXZ C9 C14 sing Y N 230 PXZ "C0'" "O1'" doub N N 231 PXZ N10 C11 doub N N 232 PXZ N10 C14 sing N N 233 PXZ C11 C12 sing N N 234 PXZ C13 C14 doub Y N 235 PXZ C15 H151 sing N N 236 PXZ C15 H152 sing N N 237 PXZ C15 H153 sing N N 238 PXZ C16 H161 sing N N 239 PXZ C16 H162 sing N N 240 PXZ C16 H163 sing N N 241 PXZ "C0'" "OXT'" sing N N 242 PXZ C0 OXT sing N N 243 PXZ "OXT'" "HXT'" sing N N 244 PXZ OXT HXT sing N N 245 SAR N CA sing N N 246 SAR N CN sing N N 247 SAR N H sing N N 248 SAR CA C sing N N 249 SAR CA HA2 sing N N 250 SAR CA HA3 sing N N 251 SAR C O doub N N 252 SAR C OXT sing N N 253 SAR CN HN1 sing N N 254 SAR CN HN2 sing N N 255 SAR CN HN3 sing N N 256 SAR OXT HXT sing N N 257 THR N CA sing N N 258 THR N H sing N N 259 THR N H2 sing N N 260 THR CA C sing N N 261 THR CA CB sing N N 262 THR CA HA sing N N 263 THR C O doub N N 264 THR C OXT sing N N 265 THR CB OG1 sing N N 266 THR CB CG2 sing N N 267 THR CB HB sing N N 268 THR OG1 HG1 sing N N 269 THR CG2 HG21 sing N N 270 THR CG2 HG22 sing N N 271 THR CG2 HG23 sing N N 272 THR OXT HXT sing N N 273 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4HIV 'double helix' 4HIV 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 8 1_555 -0.286 -0.073 0.887 -16.168 -13.619 -3.863 1 A_DT2:DA17_B A 2 ? B 17 ? 20 1 1 A DG 3 1_555 B DC 7 1_555 -0.405 -0.418 1.229 9.747 19.646 3.074 2 A_DG3:DC16_B A 3 ? B 16 ? 19 1 1 A DG 5 1_555 B DC 4 1_555 0.075 -0.148 0.490 8.317 17.297 -16.605 3 A_DG5:DC13_B A 5 ? B 13 ? ? 1 1 A DC 7 1_555 B DG 3 1_555 -0.652 -0.040 -0.743 14.848 16.452 -6.018 4 A_DC7:DG12_B A 7 ? B 12 ? 19 1 1 A DA 8 1_555 B DT 2 1_555 0.107 0.256 0.664 37.263 -17.381 8.832 5 A_DA8:DT11_B A 8 ? B 11 ? 20 1 1 A DT 9 1_555 B DA 1 1_555 -1.415 -0.509 0.942 27.717 -14.962 9.803 6 A_DT9:DA10_B A 9 ? B 10 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 8 1_555 A DG 3 1_555 B DC 7 1_555 1.310 1.644 3.207 -5.478 -1.933 32.186 3.232 -3.211 2.850 -3.451 9.782 32.693 1 AA_DT2DG3:DC16DA17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 5 1_555 B DC 4 1_555 A DC 7 1_555 B DG 3 1_555 0.957 2.950 6.789 12.259 9.231 4.652 -7.315 20.327 4.405 44.055 -58.505 16.032 2 AA_DG5DC7:DG12DC13_BB A 5 ? B 13 ? A 7 ? B 12 ? 1 A DC 7 1_555 B DG 3 1_555 A DA 8 1_555 B DT 2 1_555 0.055 1.864 2.908 -0.372 3.033 36.610 2.581 -0.134 3.046 4.817 0.591 36.733 3 AA_DC7DA8:DT11DG12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A DA 8 1_555 B DT 2 1_555 A DT 9 1_555 B DA 1 1_555 0.907 -1.382 3.393 -6.506 0.190 29.911 -2.656 -3.016 3.122 0.362 12.420 30.595 4 AA_DA8DT9:DA10DT11_BB A 8 ? B 11 ? A 9 ? B 10 ? # _atom_sites.entry_id 4HIV _atom_sites.fract_transf_matrix[1][1] 0.011503 _atom_sites.fract_transf_matrix[1][2] 0.006641 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013282 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020089 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_