HEADER HYDROLASE 13-OCT-12 4HJQ TITLE SHP-1 CATALYTIC DOMAIN WPD LOOP CLOSED COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHOSPHATASE DOMAIN (UNP RESIDUES 242-528); COMPND 5 SYNONYM: HEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE, PROTEIN- COMPND 6 TYROSINE PHOSPHATASE 1C, PTP-1C, PROTEIN-TYROSINE PHOSPHATASE SHP-1, COMPND 7 SH-PTP1; COMPND 8 EC: 3.1.3.48; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCP, PTP1C, PTPN6, SHP-1 (PTPN6); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32 KEYWDS PHOSPHATASE DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.L.ALICEA-VELAZQUEZ,T.J.BOGGON REVDAT 4 20-SEP-23 4HJQ 1 REMARK SEQADV REVDAT 3 15-NOV-17 4HJQ 1 REMARK REVDAT 2 21-AUG-13 4HJQ 1 JRNL REVDAT 1 03-APR-13 4HJQ 0 JRNL AUTH N.L.ALICEA-VELAZQUEZ,T.J.BOGGON JRNL TITL SHP FAMILY PROTEIN TYROSINE PHOSPHATASES ADOPT CANONICAL JRNL TITL 2 ACTIVE-SITE CONFORMATIONS IN THE APO AND PHOSPHATE-BOUND JRNL TITL 3 STATES. JRNL REF PROTEIN PEPT.LETT. V. 20 1039 2013 JRNL REFN ISSN 0929-8665 JRNL PMID 23514039 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 63489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9079 - 5.1136 0.96 2625 126 0.1994 0.1969 REMARK 3 2 5.1136 - 4.0624 0.97 2646 143 0.1338 0.1587 REMARK 3 3 4.0624 - 3.5499 0.98 2639 157 0.1439 0.1965 REMARK 3 4 3.5499 - 3.2258 0.97 2674 139 0.1532 0.1637 REMARK 3 5 3.2258 - 2.9949 0.97 2643 146 0.1600 0.1946 REMARK 3 6 2.9949 - 2.8184 0.97 2671 137 0.1622 0.2006 REMARK 3 7 2.8184 - 2.6774 0.98 2670 123 0.1605 0.1766 REMARK 3 8 2.6774 - 2.5609 0.97 2657 145 0.1586 0.2458 REMARK 3 9 2.5609 - 2.4624 0.97 2644 144 0.1595 0.2073 REMARK 3 10 2.4624 - 2.3775 0.97 2626 155 0.1611 0.2047 REMARK 3 11 2.3775 - 2.3031 0.97 2607 151 0.1592 0.2024 REMARK 3 12 2.3031 - 2.2373 0.97 2671 135 0.1590 0.2094 REMARK 3 13 2.2373 - 2.1785 0.97 2636 132 0.1566 0.2180 REMARK 3 14 2.1785 - 2.1253 0.97 2658 132 0.1650 0.1876 REMARK 3 15 2.1253 - 2.0770 0.97 2581 147 0.1620 0.2325 REMARK 3 16 2.0770 - 2.0328 0.96 2687 147 0.1720 0.2124 REMARK 3 17 2.0328 - 1.9922 0.96 2588 120 0.1717 0.2147 REMARK 3 18 1.9922 - 1.9546 0.97 2677 125 0.1804 0.2402 REMARK 3 19 1.9546 - 1.9197 0.96 2599 142 0.1878 0.1876 REMARK 3 20 1.9197 - 1.8872 0.96 2589 151 0.1942 0.2441 REMARK 3 21 1.8872 - 1.8567 0.95 2623 144 0.2187 0.2724 REMARK 3 22 1.8567 - 1.8282 0.96 2557 146 0.2519 0.2886 REMARK 3 23 1.8282 - 1.8013 0.85 2305 129 0.2795 0.3407 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 57.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71610 REMARK 3 B22 (A**2) : 4.29780 REMARK 3 B33 (A**2) : -2.58170 REMARK 3 B12 (A**2) : -0.14710 REMARK 3 B13 (A**2) : 0.79450 REMARK 3 B23 (A**2) : -2.62180 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4773 REMARK 3 ANGLE : 1.021 6500 REMARK 3 CHIRALITY : 0.074 696 REMARK 3 PLANARITY : 0.004 854 REMARK 3 DIHEDRAL : 14.684 1831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 243:267) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4545 42.8990 62.2924 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.2476 REMARK 3 T33: 0.1611 T12: 0.0700 REMARK 3 T13: 0.0540 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.2251 L22: 3.1625 REMARK 3 L33: 6.0610 L12: 2.3898 REMARK 3 L13: 3.9598 L23: 3.5944 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: -0.2832 S13: 0.2926 REMARK 3 S21: 0.0468 S22: -0.2444 S23: 0.3820 REMARK 3 S31: -0.4481 S32: -0.6551 S33: 0.4312 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 268:320) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5357 37.1634 46.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0937 REMARK 3 T33: 0.1054 T12: 0.0376 REMARK 3 T13: 0.0073 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 0.8209 L22: 1.3844 REMARK 3 L33: 0.9958 L12: 0.6436 REMARK 3 L13: 0.1513 L23: 0.3944 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.0653 S13: 0.0335 REMARK 3 S21: -0.0138 S22: -0.0064 S23: 0.1117 REMARK 3 S31: -0.2962 S32: -0.3281 S33: -0.0560 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 321:476) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8570 33.0417 45.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0136 REMARK 3 T33: 0.0848 T12: -0.0381 REMARK 3 T13: 0.0045 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.8577 L22: 0.8286 REMARK 3 L33: 1.7662 L12: 0.0120 REMARK 3 L13: 0.0354 L23: 0.8215 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.0347 S13: -0.0925 REMARK 3 S21: -0.0809 S22: 0.2573 S23: -0.0637 REMARK 3 S31: -0.1430 S32: 0.6495 S33: -0.0505 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 477:523) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7817 48.8726 58.8519 REMARK 3 T TENSOR REMARK 3 T11: 0.3119 T22: 0.1363 REMARK 3 T33: 0.1715 T12: -0.0814 REMARK 3 T13: 0.0631 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.5622 L22: 1.8755 REMARK 3 L33: 1.5889 L12: -0.2632 REMARK 3 L13: 0.2609 L23: 0.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: -0.0297 S13: 0.6343 REMARK 3 S21: 0.0769 S22: 0.1747 S23: -0.2855 REMARK 3 S31: -0.7483 S32: 0.4090 S33: 0.0129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 243:282) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6381 59.3551 7.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.2342 REMARK 3 T33: 0.0947 T12: -0.0043 REMARK 3 T13: -0.0244 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.0309 L22: 1.2152 REMARK 3 L33: 2.4413 L12: -1.1301 REMARK 3 L13: -1.8833 L23: 1.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: 0.4996 S13: -0.1135 REMARK 3 S21: -0.1670 S22: -0.2727 S23: 0.2059 REMARK 3 S31: 0.1006 S32: -0.5437 S33: 0.1956 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 283:319) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2710 56.2903 23.2238 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.1010 REMARK 3 T33: 0.0880 T12: -0.0320 REMARK 3 T13: 0.0092 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.3626 L22: 1.3512 REMARK 3 L33: 1.0264 L12: 0.3833 REMARK 3 L13: 0.2482 L23: 0.2479 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: -0.1202 S13: -0.0532 REMARK 3 S21: 0.1624 S22: -0.0639 S23: 0.1464 REMARK 3 S31: 0.3269 S32: -0.2123 S33: 0.0515 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 320:476) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4900 62.3712 23.3125 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.0991 REMARK 3 T33: 0.0926 T12: 0.0121 REMARK 3 T13: -0.0097 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.2043 L22: 0.8909 REMARK 3 L33: 1.6191 L12: -0.4548 REMARK 3 L13: -0.3908 L23: 1.1178 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.1000 S13: 0.0836 REMARK 3 S21: 0.0526 S22: 0.2096 S23: -0.1161 REMARK 3 S31: 0.0775 S32: 0.3408 S33: -0.1007 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 477:523) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9407 46.6597 9.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.1863 T22: 0.1082 REMARK 3 T33: 0.1008 T12: 0.0311 REMARK 3 T13: -0.0148 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.5682 L22: 2.1977 REMARK 3 L33: 1.7455 L12: -0.0351 REMARK 3 L13: -0.2748 L23: 0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0039 S13: -0.4588 REMARK 3 S21: -0.0105 S22: 0.0822 S23: -0.2353 REMARK 3 S31: 0.4367 S32: 0.2268 S33: -0.0492 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98010 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 13.1190 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 FOR SHELL : 2.161 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5, 20 MM MGCL2, 28% REMARK 280 SODIUM POLYACRYLATE 5100 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 GLY A 228 REMARK 465 SER A 229 REMARK 465 LEU A 230 REMARK 465 VAL A 231 REMARK 465 PRO A 232 REMARK 465 ARG A 233 REMARK 465 SER A 234 REMARK 465 GLU A 235 REMARK 465 ASN A 236 REMARK 465 LEU A 237 REMARK 465 TYR A 238 REMARK 465 PHE A 239 REMARK 465 GLN A 240 REMARK 465 GLY A 241 REMARK 465 SER A 242 REMARK 465 GLU A 524 REMARK 465 VAL A 525 REMARK 465 LEU A 526 REMARK 465 GLN A 527 REMARK 465 SER A 528 REMARK 465 MET B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 GLY B 228 REMARK 465 SER B 229 REMARK 465 LEU B 230 REMARK 465 VAL B 231 REMARK 465 PRO B 232 REMARK 465 ARG B 233 REMARK 465 SER B 234 REMARK 465 GLU B 235 REMARK 465 ASN B 236 REMARK 465 LEU B 237 REMARK 465 TYR B 238 REMARK 465 PHE B 239 REMARK 465 GLN B 240 REMARK 465 GLY B 241 REMARK 465 SER B 242 REMARK 465 GLU B 524 REMARK 465 VAL B 525 REMARK 465 LEU B 526 REMARK 465 GLN B 527 REMARK 465 SER B 528 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 253 O NZ REMARK 480 LEU A 259 CB CG CD1 CD2 REMARK 480 LYS A 271 CG CD CE NZ REMARK 480 LYS A 356 CE NZ REMARK 480 GLU A 425 CD OE1 OE2 REMARK 480 LEU B 259 CG CD1 CD2 REMARK 480 LYS B 277 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 249 O HOH B 928 2.14 REMARK 500 OE1 GLU A 249 O HOH A 949 2.17 REMARK 500 OE2 GLU B 425 O HOH B 1051 2.18 REMARK 500 O HOH A 781 O HOH A 949 2.18 REMARK 500 O HOH A 773 O HOH A 805 2.18 REMARK 500 NE2 GLN B 396 O HOH B 1038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 259 78.19 -106.38 REMARK 500 ASN A 402 61.43 -158.41 REMARK 500 SER A 453 -133.40 -132.60 REMARK 500 SER A 454 -61.56 -95.71 REMARK 500 ILE A 457 -34.33 -130.38 REMARK 500 VAL A 499 100.05 72.85 REMARK 500 LEU B 259 41.62 -102.89 REMARK 500 THR B 388 -19.89 73.97 REMARK 500 ASN B 402 60.17 -151.71 REMARK 500 SER B 453 -131.26 -134.26 REMARK 500 VAL B 499 101.59 72.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HJP RELATED DB: PDB REMARK 900 OPEN CONFORMATION DBREF 4HJQ A 243 528 UNP P29350 PTN6_HUMAN 243 528 DBREF 4HJQ B 243 528 UNP P29350 PTN6_HUMAN 243 528 SEQADV 4HJQ MET A 221 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS A 222 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS A 223 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS A 224 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS A 225 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS A 226 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS A 227 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLY A 228 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER A 229 UNP P29350 EXPRESSION TAG SEQADV 4HJQ LEU A 230 UNP P29350 EXPRESSION TAG SEQADV 4HJQ VAL A 231 UNP P29350 EXPRESSION TAG SEQADV 4HJQ PRO A 232 UNP P29350 EXPRESSION TAG SEQADV 4HJQ ARG A 233 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER A 234 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLU A 235 UNP P29350 EXPRESSION TAG SEQADV 4HJQ ASN A 236 UNP P29350 EXPRESSION TAG SEQADV 4HJQ LEU A 237 UNP P29350 EXPRESSION TAG SEQADV 4HJQ TYR A 238 UNP P29350 EXPRESSION TAG SEQADV 4HJQ PHE A 239 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLN A 240 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLY A 241 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER A 242 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER A 453 UNP P29350 CYS 453 ENGINEERED MUTATION SEQADV 4HJQ MET B 221 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS B 222 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS B 223 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS B 224 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS B 225 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS B 226 UNP P29350 EXPRESSION TAG SEQADV 4HJQ HIS B 227 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLY B 228 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER B 229 UNP P29350 EXPRESSION TAG SEQADV 4HJQ LEU B 230 UNP P29350 EXPRESSION TAG SEQADV 4HJQ VAL B 231 UNP P29350 EXPRESSION TAG SEQADV 4HJQ PRO B 232 UNP P29350 EXPRESSION TAG SEQADV 4HJQ ARG B 233 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER B 234 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLU B 235 UNP P29350 EXPRESSION TAG SEQADV 4HJQ ASN B 236 UNP P29350 EXPRESSION TAG SEQADV 4HJQ LEU B 237 UNP P29350 EXPRESSION TAG SEQADV 4HJQ TYR B 238 UNP P29350 EXPRESSION TAG SEQADV 4HJQ PHE B 239 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLN B 240 UNP P29350 EXPRESSION TAG SEQADV 4HJQ GLY B 241 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER B 242 UNP P29350 EXPRESSION TAG SEQADV 4HJQ SER B 453 UNP P29350 CYS 453 ENGINEERED MUTATION SEQRES 1 A 308 MET HIS HIS HIS HIS HIS HIS GLY SER LEU VAL PRO ARG SEQRES 2 A 308 SER GLU ASN LEU TYR PHE GLN GLY SER GLY PHE TRP GLU SEQRES 3 A 308 GLU PHE GLU SER LEU GLN LYS GLN GLU VAL LYS ASN LEU SEQRES 4 A 308 HIS GLN ARG LEU GLU GLY GLN ARG PRO GLU ASN LYS GLY SEQRES 5 A 308 LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE ASP HIS SER SEQRES 6 A 308 ARG VAL ILE LEU GLN GLY ARG ASP SER ASN ILE PRO GLY SEQRES 7 A 308 SER ASP TYR ILE ASN ALA ASN TYR ILE LYS ASN GLN LEU SEQRES 8 A 308 LEU GLY PRO ASP GLU ASN ALA LYS THR TYR ILE ALA SER SEQRES 9 A 308 GLN GLY CYS LEU GLU ALA THR VAL ASN ASP PHE TRP GLN SEQRES 10 A 308 MET ALA TRP GLN GLU ASN SER ARG VAL ILE VAL MET THR SEQRES 11 A 308 THR ARG GLU VAL GLU LYS GLY ARG ASN LYS CYS VAL PRO SEQRES 12 A 308 TYR TRP PRO GLU VAL GLY MET GLN ARG ALA TYR GLY PRO SEQRES 13 A 308 TYR SER VAL THR ASN CYS GLY GLU HIS ASP THR THR GLU SEQRES 14 A 308 TYR LYS LEU ARG THR LEU GLN VAL SER PRO LEU ASP ASN SEQRES 15 A 308 GLY ASP LEU ILE ARG GLU ILE TRP HIS TYR GLN TYR LEU SEQRES 16 A 308 SER TRP PRO ASP HIS GLY VAL PRO SER GLU PRO GLY GLY SEQRES 17 A 308 VAL LEU SER PHE LEU ASP GLN ILE ASN GLN ARG GLN GLU SEQRES 18 A 308 SER LEU PRO HIS ALA GLY PRO ILE ILE VAL HIS SER SER SEQRES 19 A 308 ALA GLY ILE GLY ARG THR GLY THR ILE ILE VAL ILE ASP SEQRES 20 A 308 MET LEU MET GLU ASN ILE SER THR LYS GLY LEU ASP CYS SEQRES 21 A 308 ASP ILE ASP ILE GLN LYS THR ILE GLN MET VAL ARG ALA SEQRES 22 A 308 GLN ARG SER GLY MET VAL GLN THR GLU ALA GLN TYR LYS SEQRES 23 A 308 PHE ILE TYR VAL ALA ILE ALA GLN PHE ILE GLU THR THR SEQRES 24 A 308 LYS LYS LYS LEU GLU VAL LEU GLN SER SEQRES 1 B 308 MET HIS HIS HIS HIS HIS HIS GLY SER LEU VAL PRO ARG SEQRES 2 B 308 SER GLU ASN LEU TYR PHE GLN GLY SER GLY PHE TRP GLU SEQRES 3 B 308 GLU PHE GLU SER LEU GLN LYS GLN GLU VAL LYS ASN LEU SEQRES 4 B 308 HIS GLN ARG LEU GLU GLY GLN ARG PRO GLU ASN LYS GLY SEQRES 5 B 308 LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE ASP HIS SER SEQRES 6 B 308 ARG VAL ILE LEU GLN GLY ARG ASP SER ASN ILE PRO GLY SEQRES 7 B 308 SER ASP TYR ILE ASN ALA ASN TYR ILE LYS ASN GLN LEU SEQRES 8 B 308 LEU GLY PRO ASP GLU ASN ALA LYS THR TYR ILE ALA SER SEQRES 9 B 308 GLN GLY CYS LEU GLU ALA THR VAL ASN ASP PHE TRP GLN SEQRES 10 B 308 MET ALA TRP GLN GLU ASN SER ARG VAL ILE VAL MET THR SEQRES 11 B 308 THR ARG GLU VAL GLU LYS GLY ARG ASN LYS CYS VAL PRO SEQRES 12 B 308 TYR TRP PRO GLU VAL GLY MET GLN ARG ALA TYR GLY PRO SEQRES 13 B 308 TYR SER VAL THR ASN CYS GLY GLU HIS ASP THR THR GLU SEQRES 14 B 308 TYR LYS LEU ARG THR LEU GLN VAL SER PRO LEU ASP ASN SEQRES 15 B 308 GLY ASP LEU ILE ARG GLU ILE TRP HIS TYR GLN TYR LEU SEQRES 16 B 308 SER TRP PRO ASP HIS GLY VAL PRO SER GLU PRO GLY GLY SEQRES 17 B 308 VAL LEU SER PHE LEU ASP GLN ILE ASN GLN ARG GLN GLU SEQRES 18 B 308 SER LEU PRO HIS ALA GLY PRO ILE ILE VAL HIS SER SER SEQRES 19 B 308 ALA GLY ILE GLY ARG THR GLY THR ILE ILE VAL ILE ASP SEQRES 20 B 308 MET LEU MET GLU ASN ILE SER THR LYS GLY LEU ASP CYS SEQRES 21 B 308 ASP ILE ASP ILE GLN LYS THR ILE GLN MET VAL ARG ALA SEQRES 22 B 308 GLN ARG SER GLY MET VAL GLN THR GLU ALA GLN TYR LYS SEQRES 23 B 308 PHE ILE TYR VAL ALA ILE ALA GLN PHE ILE GLU THR THR SEQRES 24 B 308 LYS LYS LYS LEU GLU VAL LEU GLN SER HET PO4 A 601 5 HET PO4 B 601 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *682(H2 O) HELIX 1 1 GLY A 243 VAL A 256 1 14 HELIX 2 2 ARG A 262 ARG A 267 1 6 HELIX 3 3 PRO A 268 ASN A 274 5 7 HELIX 4 4 PHE A 282 HIS A 284 5 3 HELIX 5 5 LEU A 328 ALA A 330 5 3 HELIX 6 6 THR A 331 GLU A 342 1 12 HELIX 7 7 PRO A 426 SER A 442 1 17 HELIX 8 8 GLY A 458 GLY A 477 1 20 HELIX 9 9 ASP A 483 ALA A 493 1 11 HELIX 10 10 THR A 501 LEU A 523 1 23 HELIX 11 11 PHE B 244 LYS B 257 1 14 HELIX 12 12 ARG B 267 ASN B 274 5 8 HELIX 13 13 PHE B 282 ARG B 286 5 5 HELIX 14 14 GLY B 313 ASN B 317 5 5 HELIX 15 15 LEU B 328 ALA B 330 5 3 HELIX 16 16 THR B 331 GLU B 342 1 12 HELIX 17 17 PRO B 426 LEU B 443 1 18 HELIX 18 18 ILE B 457 GLY B 477 1 21 HELIX 19 19 ASP B 483 ALA B 493 1 11 HELIX 20 20 THR B 501 LYS B 522 1 22 SHEET 1 A 9 ARG A 286 ILE A 288 0 SHEET 2 A 9 TYR A 301 ILE A 307 -1 O ALA A 304 N VAL A 287 SHEET 3 A 9 TYR A 321 SER A 324 -1 O TYR A 321 N ILE A 307 SHEET 4 A 9 ILE A 449 HIS A 452 1 O VAL A 451 N ILE A 322 SHEET 5 A 9 VAL A 346 MET A 349 1 N VAL A 348 O ILE A 450 SHEET 6 A 9 ARG A 407 TYR A 414 1 O TYR A 412 N MET A 349 SHEET 7 A 9 TYR A 390 PRO A 399 -1 N ARG A 393 O HIS A 411 SHEET 8 A 9 TYR A 377 ASP A 386 -1 N SER A 378 O SER A 398 SHEET 9 A 9 GLN A 371 TYR A 374 -1 N TYR A 374 O TYR A 377 SHEET 1 B 2 VAL A 354 GLU A 355 0 SHEET 2 B 2 ARG A 358 ASN A 359 -1 O ARG A 358 N GLU A 355 SHEET 1 C 8 ALA B 304 LYS B 308 0 SHEET 2 C 8 THR B 320 SER B 324 -1 O TYR B 321 N ILE B 307 SHEET 3 C 8 ILE B 449 HIS B 452 1 O VAL B 451 N ILE B 322 SHEET 4 C 8 VAL B 346 MET B 349 1 N VAL B 348 O ILE B 450 SHEET 5 C 8 ARG B 407 TYR B 414 1 O TYR B 412 N MET B 349 SHEET 6 C 8 TYR B 390 PRO B 399 -1 N VAL B 397 O ARG B 407 SHEET 7 C 8 TYR B 377 ASP B 386 -1 N HIS B 385 O LEU B 392 SHEET 8 C 8 GLN B 371 TYR B 374 -1 N TYR B 374 O TYR B 377 SHEET 1 D 2 VAL B 354 GLU B 355 0 SHEET 2 D 2 ARG B 358 ASN B 359 -1 O ARG B 358 N GLU B 355 SITE 1 AC1 10 ASP A 419 SER A 453 SER A 454 ALA A 455 SITE 2 AC1 10 GLY A 456 ILE A 457 GLY A 458 ARG A 459 SITE 3 AC1 10 GLN A 500 HOH A 701 SITE 1 AC2 10 ASP B 419 SER B 453 SER B 454 ALA B 455 SITE 2 AC2 10 GLY B 456 ILE B 457 GLY B 458 ARG B 459 SITE 3 AC2 10 GLN B 500 HOH B 701 CRYST1 45.642 57.783 77.319 102.39 94.71 110.01 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021910 0.007979 0.004008 0.00000 SCALE2 0.000000 0.018418 0.004941 0.00000 SCALE3 0.000000 0.000000 0.013436 0.00000