HEADER LYASE 14-OCT-12 4HJZ TITLE 1.9 A CRYSTAL STRUCTURE OF E. COLI MLTE-E64Q WITH BOUND CHITOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-TYPE MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 17-203; COMPND 5 SYNONYM: PEPTIDOGLYCAN LYTIC ENDOTRANSGLYCOSYLASE; COMPND 6 EC: 4.2.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: EMTA, MLTE, SLTZ, YCGP, B1193, JW5821; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBADNLIC-MLTE KEYWDS GOOSE TYPE LYSOZYME-LIKE STRUCTURE, LYTIC TRANSGLYCOSYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FIBRIANSAH,F.I.GLIUBICH,A.-M.W.H.THUNNISSEN REVDAT 5 20-SEP-23 4HJZ 1 HETSYN REVDAT 4 29-JUL-20 4HJZ 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 26-DEC-12 4HJZ 1 JRNL REVDAT 2 31-OCT-12 4HJZ 1 JRNL REVDAT 1 24-OCT-12 4HJZ 0 SPRSDE 24-OCT-12 4HJZ 3T21 JRNL AUTH G.FIBRIANSAH,F.I.GLIUBICH,A.M.THUNNISSEN JRNL TITL ON THE MECHANISM OF PEPTIDOGLYCAN BINDING AND CLEAVAGE BY JRNL TITL 2 THE ENDO-SPECIFIC LYTIC TRANSGLYCOSYLASE MLTE FROM JRNL TITL 3 ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 51 9164 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23075328 JRNL DOI 10.1021/BI300900T REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 28810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2881 - 4.0918 1.00 2879 179 0.2164 0.2574 REMARK 3 2 4.0918 - 3.2484 1.00 2797 157 0.1764 0.2158 REMARK 3 3 3.2484 - 2.8379 1.00 2789 124 0.1959 0.2584 REMARK 3 4 2.8379 - 2.5785 1.00 2783 138 0.2065 0.2696 REMARK 3 5 2.5785 - 2.3937 1.00 2771 156 0.1998 0.2812 REMARK 3 6 2.3937 - 2.2526 1.00 2726 154 0.2149 0.2949 REMARK 3 7 2.2526 - 2.1398 1.00 2732 159 0.2108 0.2669 REMARK 3 8 2.1398 - 2.0467 1.00 2749 145 0.2191 0.3007 REMARK 3 9 2.0467 - 1.9679 0.98 2723 137 0.2294 0.2866 REMARK 3 10 1.9679 - 1.9000 0.88 2392 120 0.2447 0.2922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3041 REMARK 3 ANGLE : 1.244 4154 REMARK 3 CHIRALITY : 0.064 476 REMARK 3 PLANARITY : 0.006 533 REMARK 3 DIHEDRAL : 24.426 1191 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2244 27.4740 42.5220 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.1457 REMARK 3 T33: 0.0991 T12: -0.0106 REMARK 3 T13: 0.0459 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.8392 L22: 1.1293 REMARK 3 L33: 2.4451 L12: 0.5776 REMARK 3 L13: -0.5723 L23: -0.5844 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.2007 S13: 0.0611 REMARK 3 S21: -0.5566 S22: 0.0257 S23: -0.2143 REMARK 3 S31: -0.0526 S32: 0.0766 S33: 0.0611 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1260 33.5176 62.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.0799 T22: 0.1274 REMARK 3 T33: 0.0998 T12: 0.0196 REMARK 3 T13: -0.0270 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 5.0693 L22: 4.2666 REMARK 3 L33: 6.1081 L12: 4.5798 REMARK 3 L13: -1.2759 L23: -2.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.3433 S13: 0.1612 REMARK 3 S21: 0.1177 S22: -0.2063 S23: 0.0620 REMARK 3 S31: -0.0052 S32: -0.1884 S33: 0.1057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0548 29.8829 52.8288 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.0772 REMARK 3 T33: 0.0343 T12: -0.0071 REMARK 3 T13: 0.0003 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.7197 L22: 2.1247 REMARK 3 L33: 2.0868 L12: -0.3563 REMARK 3 L13: 0.5745 L23: 0.1298 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.2686 S13: -0.2412 REMARK 3 S21: -0.0127 S22: 0.0715 S23: 0.0491 REMARK 3 S31: -0.0038 S32: 0.0446 S33: -0.0696 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6167 39.5329 40.8212 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.1391 REMARK 3 T33: 0.0770 T12: -0.0004 REMARK 3 T13: -0.0659 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6730 L22: 2.1107 REMARK 3 L33: 1.6812 L12: -0.3846 REMARK 3 L13: 0.3029 L23: -0.7158 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.0514 S13: 0.0190 REMARK 3 S21: -0.2175 S22: 0.0458 S23: 0.0550 REMARK 3 S31: -0.1547 S32: -0.1625 S33: -0.0200 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9599 23.3229 82.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.1084 REMARK 3 T33: 0.0767 T12: 0.0023 REMARK 3 T13: -0.0066 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.0753 L22: 2.0489 REMARK 3 L33: 2.0766 L12: -0.3732 REMARK 3 L13: -0.1011 L23: -0.2114 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.2733 S13: -0.0598 REMARK 3 S21: 0.4675 S22: 0.0670 S23: -0.0526 REMARK 3 S31: 0.1174 S32: -0.0570 S33: 0.0336 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6608 17.2618 63.3614 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.1151 REMARK 3 T33: 0.0537 T12: 0.0031 REMARK 3 T13: 0.0057 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.8713 L22: 2.2564 REMARK 3 L33: 4.1266 L12: -0.9056 REMARK 3 L13: 1.2593 L23: -2.9121 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.3579 S13: -0.0653 REMARK 3 S21: -0.2935 S22: -0.0844 S23: -0.1036 REMARK 3 S31: 0.0555 S32: 0.0710 S33: 0.0112 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3241 21.1631 70.2368 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0781 REMARK 3 T33: 0.0879 T12: 0.0163 REMARK 3 T13: 0.0059 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.1128 L22: 1.7476 REMARK 3 L33: 1.5931 L12: -0.1036 REMARK 3 L13: -0.4232 L23: 0.1898 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: 0.1228 S13: 0.1150 REMARK 3 S21: 0.0581 S22: 0.0466 S23: -0.0303 REMARK 3 S31: 0.0620 S32: 0.0728 S33: 0.0331 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7797 11.3247 76.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.0901 REMARK 3 T33: 0.1708 T12: 0.0140 REMARK 3 T13: 0.0398 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.9137 L22: 2.3674 REMARK 3 L33: 2.1151 L12: 0.7170 REMARK 3 L13: -0.1034 L23: -0.0372 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.0538 S13: -0.0458 REMARK 3 S21: 0.1034 S22: 0.0034 S23: 0.1972 REMARK 3 S31: 0.1314 S32: -0.1321 S33: 0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RD COATED TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28825 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 74.562 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : 0.21700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3T36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SUCCINIC ACID, PH 5.5, 15% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.16100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 LEU A 12 REMARK 465 TYR A 13 REMARK 465 PHE A 14 REMARK 465 GLN A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 LYS A 19 REMARK 465 HIS A 20 REMARK 465 MET B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 GLY B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 LEU B 12 REMARK 465 TYR B 13 REMARK 465 PHE B 14 REMARK 465 GLN B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 LYS B 19 REMARK 465 HIS B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 101 O HOH A 583 1.82 REMARK 500 OD2 ASP B 170 O HOH B 597 1.90 REMARK 500 O HOH A 513 O HOH A 580 1.93 REMARK 500 O LYS A 30 O HOH A 602 1.95 REMARK 500 O HOH A 571 O HOH A 607 1.95 REMARK 500 O HOH A 612 O HOH A 614 1.99 REMARK 500 O HOH B 602 O HOH B 645 2.00 REMARK 500 O HOH B 575 O HOH B 600 2.01 REMARK 500 O HOH B 595 O HOH B 641 2.02 REMARK 500 OE2 GLU A 101 O HOH A 419 2.03 REMARK 500 OD2 ASP A 21 OG1 THR A 23 2.03 REMARK 500 O HOH B 639 O HOH B 647 2.03 REMARK 500 OD1 ASN A 28 O HOH A 594 2.04 REMARK 500 O HOH A 568 O HOH A 597 2.04 REMARK 500 O HOH A 618 O HOH A 623 2.05 REMARK 500 O HOH B 550 O HOH B 587 2.05 REMARK 500 NH1 ARG B 35 OD1 ASN B 68 2.05 REMARK 500 O HOH A 544 O HOH A 555 2.06 REMARK 500 O HOH B 538 O HOH B 594 2.06 REMARK 500 O HOH A 516 O HOH A 619 2.07 REMARK 500 N THR A 58 O HOH A 514 2.08 REMARK 500 O HOH A 529 O HOH A 536 2.09 REMARK 500 O HOH A 568 O HOH A 580 2.09 REMARK 500 O HOH A 591 O HOH A 596 2.09 REMARK 500 O HOH B 525 O HOH B 528 2.10 REMARK 500 OE1 GLN A 38 O HOH A 442 2.12 REMARK 500 O HOH B 622 O HOH B 630 2.13 REMARK 500 O HOH A 446 O HOH A 510 2.13 REMARK 500 O HOH A 582 O HOH A 585 2.13 REMARK 500 O HOH B 538 O HOH B 635 2.13 REMARK 500 O PRO B 187 O HOH B 574 2.14 REMARK 500 O HOH B 449 O HOH B 513 2.14 REMARK 500 O HOH A 622 O HOH A 630 2.14 REMARK 500 O HOH B 551 O HOH B 594 2.14 REMARK 500 O HOH B 580 O HOH B 648 2.15 REMARK 500 O HOH A 435 O HOH A 566 2.15 REMARK 500 O HOH A 420 O HOH A 505 2.15 REMARK 500 O HOH A 486 O HOH A 521 2.15 REMARK 500 O HOH A 573 O HOH A 576 2.16 REMARK 500 O HOH A 535 O HOH A 540 2.16 REMARK 500 O HOH B 465 O HOH B 625 2.17 REMARK 500 O HOH B 484 O HOH B 576 2.17 REMARK 500 O HOH A 554 O HOH A 566 2.17 REMARK 500 O HOH B 507 O HOH B 610 2.18 REMARK 500 OG SER B 115 O HOH B 420 2.18 REMARK 500 O HOH B 559 O HOH B 589 2.19 REMARK 500 O HOH A 603 O HOH A 629 2.19 REMARK 500 O LYS B 30 O HOH B 583 2.19 REMARK 500 O HOH B 437 O HOH B 535 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 521 O HOH B 528 2547 1.88 REMARK 500 O HOH A 570 O HOH A 597 1565 1.93 REMARK 500 O HOH B 590 O HOH B 597 2557 1.96 REMARK 500 O HOH A 600 O HOH A 636 1545 2.08 REMARK 500 O HOH A 568 O HOH A 570 1545 2.10 REMARK 500 O HOH A 590 O HOH A 591 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 87 -80.36 -113.76 REMARK 500 TYR B 22 0.76 -69.66 REMARK 500 THR B 87 -80.17 -114.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T36 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYTIC TRANSGLYCOSYLASE MLTE FROM ESCHERICHA REMARK 900 COLI REMARK 900 RELATED ID: 4HJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI MLTE WITH BOUND BULGECIN AND REMARK 900 MURODIPEPTIDE REMARK 900 RELATED ID: 4HJY RELATED DB: PDB REMARK 900 2.4 A CRYSTAL STRUCTURE OF E. COLI MLTE-E64Q WITH BOUND REMARK 900 CHITOPENTAOSE DBREF 4HJZ A 17 203 UNP P0C960 EMTA_ECOLI 17 203 DBREF 4HJZ B 17 203 UNP P0C960 EMTA_ECOLI 17 203 SEQADV 4HJZ MET A -2 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A -1 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 0 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 1 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 2 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 3 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 4 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 5 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 6 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 7 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS A 8 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLY A 9 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLU A 10 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ ASN A 11 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ LEU A 12 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ TYR A 13 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ PHE A 14 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLN A 15 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLY A 16 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLN A 64 UNP P0C960 GLU 64 ENGINEERED MUTATION SEQADV 4HJZ MET B -2 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B -1 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 0 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 1 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 2 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 3 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 4 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 5 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 6 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 7 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ HIS B 8 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLY B 9 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLU B 10 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ ASN B 11 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ LEU B 12 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ TYR B 13 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ PHE B 14 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLN B 15 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLY B 16 UNP P0C960 EXPRESSION TAG SEQADV 4HJZ GLN B 64 UNP P0C960 GLU 64 ENGINEERED MUTATION SEQRES 1 A 206 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU SEQRES 2 A 206 ASN LEU TYR PHE GLN GLY SER SER LYS HIS ASP TYR THR SEQRES 3 A 206 ASN PRO PRO TRP ASN ALA LYS VAL PRO VAL GLN ARG ALA SEQRES 4 A 206 MET GLN TRP MET PRO ILE SER GLN LYS ALA GLY ALA ALA SEQRES 5 A 206 TRP GLY VAL ASP PRO GLN LEU ILE THR ALA ILE ILE ALA SEQRES 6 A 206 ILE GLN SER GLY GLY ASN PRO ASN ALA VAL SER LYS SER SEQRES 7 A 206 ASN ALA ILE GLY LEU MET GLN LEU LYS ALA SER THR SER SEQRES 8 A 206 GLY ARG ASP VAL TYR ARG ARG MET GLY TRP SER GLY GLU SEQRES 9 A 206 PRO THR THR SER GLU LEU LYS ASN PRO GLU ARG ASN ILE SEQRES 10 A 206 SER MET GLY ALA ALA TYR LEU ASN ILE LEU GLU THR GLY SEQRES 11 A 206 PRO LEU ALA GLY ILE GLU ASP PRO LYS VAL LEU GLN TYR SEQRES 12 A 206 ALA LEU VAL VAL SER TYR ALA ASN GLY ALA GLY ALA LEU SEQRES 13 A 206 LEU ARG THR PHE SER SER ASP ARG LYS LYS ALA ILE SER SEQRES 14 A 206 LYS ILE ASN ASP LEU ASP ALA ASP GLU PHE LEU GLU HIS SEQRES 15 A 206 VAL ALA ARG ASN HIS PRO ALA PRO GLN ALA PRO ARG TYR SEQRES 16 A 206 ILE TYR LYS LEU GLU GLN ALA LEU ASP ALA MET SEQRES 1 B 206 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU SEQRES 2 B 206 ASN LEU TYR PHE GLN GLY SER SER LYS HIS ASP TYR THR SEQRES 3 B 206 ASN PRO PRO TRP ASN ALA LYS VAL PRO VAL GLN ARG ALA SEQRES 4 B 206 MET GLN TRP MET PRO ILE SER GLN LYS ALA GLY ALA ALA SEQRES 5 B 206 TRP GLY VAL ASP PRO GLN LEU ILE THR ALA ILE ILE ALA SEQRES 6 B 206 ILE GLN SER GLY GLY ASN PRO ASN ALA VAL SER LYS SER SEQRES 7 B 206 ASN ALA ILE GLY LEU MET GLN LEU LYS ALA SER THR SER SEQRES 8 B 206 GLY ARG ASP VAL TYR ARG ARG MET GLY TRP SER GLY GLU SEQRES 9 B 206 PRO THR THR SER GLU LEU LYS ASN PRO GLU ARG ASN ILE SEQRES 10 B 206 SER MET GLY ALA ALA TYR LEU ASN ILE LEU GLU THR GLY SEQRES 11 B 206 PRO LEU ALA GLY ILE GLU ASP PRO LYS VAL LEU GLN TYR SEQRES 12 B 206 ALA LEU VAL VAL SER TYR ALA ASN GLY ALA GLY ALA LEU SEQRES 13 B 206 LEU ARG THR PHE SER SER ASP ARG LYS LYS ALA ILE SER SEQRES 14 B 206 LYS ILE ASN ASP LEU ASP ALA ASP GLU PHE LEU GLU HIS SEQRES 15 B 206 VAL ALA ARG ASN HIS PRO ALA PRO GLN ALA PRO ARG TYR SEQRES 16 B 206 ILE TYR LYS LEU GLU GLN ALA LEU ASP ALA MET HET NAG C 1 15 HET NAG C 2 14 HET NAG C 3 14 HET NAG C 4 14 HET NAG C 5 14 HET NAG D 1 15 HET NAG D 2 14 HET NAG D 3 14 HET NAG D 4 14 HET CL A 306 1 HET CL B 305 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *497(H2 O) HELIX 1 1 ALA A 29 GLN A 38 1 10 HELIX 2 2 TRP A 39 GLY A 51 1 13 HELIX 3 3 ASP A 53 GLY A 66 1 14 HELIX 4 4 THR A 87 GLY A 97 1 11 HELIX 5 5 THR A 103 ASN A 109 1 7 HELIX 6 6 ASN A 109 GLY A 127 1 19 HELIX 7 7 ASP A 134 GLY A 149 1 16 HELIX 8 8 GLY A 149 THR A 156 1 8 HELIX 9 9 ASP A 160 ASN A 169 1 10 HELIX 10 10 ASP A 172 HIS A 184 1 13 HELIX 11 11 PRO A 187 MET A 203 1 17 HELIX 12 12 ALA B 29 GLN B 38 1 10 HELIX 13 13 TRP B 39 GLY B 51 1 13 HELIX 14 14 ASP B 53 GLY B 66 1 14 HELIX 15 15 THR B 87 GLY B 97 1 11 HELIX 16 16 THR B 103 ASN B 109 1 7 HELIX 17 17 ASN B 109 GLY B 127 1 19 HELIX 18 18 ASP B 134 GLY B 149 1 16 HELIX 19 19 GLY B 149 THR B 156 1 8 HELIX 20 20 ASP B 160 ASP B 170 1 11 HELIX 21 21 ASP B 172 HIS B 184 1 13 HELIX 22 22 PRO B 187 ALA B 202 1 16 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.43 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.42 LINK O4 NAG C 4 C1 NAG C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.44 LINK O4 NAG D 3 C1 NAG D 4 1555 1555 1.45 CISPEP 1 ASN A 24 PRO A 25 0 -2.00 CISPEP 2 ASN B 24 PRO B 25 0 -4.46 CRYST1 72.013 34.322 77.516 90.00 105.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013886 0.000000 0.003948 0.00000 SCALE2 0.000000 0.029136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013412 0.00000 CONECT 2844 2845 2853 2856 CONECT 2845 2844 2846 2852 CONECT 2846 2845 2847 2854 CONECT 2847 2846 2848 2855 CONECT 2848 2847 2849 2856 CONECT 2849 2848 2857 CONECT 2850 2851 2852 2858 CONECT 2851 2850 CONECT 2852 2845 2850 CONECT 2853 2844 CONECT 2854 2846 CONECT 2855 2847 2859 CONECT 2856 2844 2848 CONECT 2857 2849 CONECT 2858 2850 CONECT 2859 2855 2860 2870 CONECT 2860 2859 2861 2867 CONECT 2861 2860 2862 2868 CONECT 2862 2861 2863 2869 CONECT 2863 2862 2864 2870 CONECT 2864 2863 2871 CONECT 2865 2866 2867 2872 CONECT 2866 2865 CONECT 2867 2860 2865 CONECT 2868 2861 CONECT 2869 2862 2873 CONECT 2870 2859 2863 CONECT 2871 2864 CONECT 2872 2865 CONECT 2873 2869 2874 2884 CONECT 2874 2873 2875 2881 CONECT 2875 2874 2876 2882 CONECT 2876 2875 2877 2883 CONECT 2877 2876 2878 2884 CONECT 2878 2877 2885 CONECT 2879 2880 2881 2886 CONECT 2880 2879 CONECT 2881 2874 2879 CONECT 2882 2875 CONECT 2883 2876 2887 CONECT 2884 2873 2877 CONECT 2885 2878 CONECT 2886 2879 CONECT 2887 2883 2888 2898 CONECT 2888 2887 2889 2895 CONECT 2889 2888 2890 2896 CONECT 2890 2889 2891 2897 CONECT 2891 2890 2892 2898 CONECT 2892 2891 2899 CONECT 2893 2894 2895 2900 CONECT 2894 2893 CONECT 2895 2888 2893 CONECT 2896 2889 CONECT 2897 2890 2901 CONECT 2898 2887 2891 CONECT 2899 2892 CONECT 2900 2893 CONECT 2901 2897 2902 2912 CONECT 2902 2901 2903 2909 CONECT 2903 2902 2904 2910 CONECT 2904 2903 2905 2911 CONECT 2905 2904 2906 2912 CONECT 2906 2905 2913 CONECT 2907 2908 2909 2914 CONECT 2908 2907 CONECT 2909 2902 2907 CONECT 2910 2903 CONECT 2911 2904 CONECT 2912 2901 2905 CONECT 2913 2906 CONECT 2914 2907 CONECT 2915 2916 2924 2927 CONECT 2916 2915 2917 2923 CONECT 2917 2916 2918 2925 CONECT 2918 2917 2919 2926 CONECT 2919 2918 2920 2927 CONECT 2920 2919 2928 CONECT 2921 2922 2923 2929 CONECT 2922 2921 CONECT 2923 2916 2921 CONECT 2924 2915 CONECT 2925 2917 CONECT 2926 2918 2930 CONECT 2927 2915 2919 CONECT 2928 2920 CONECT 2929 2921 CONECT 2930 2926 2931 2941 CONECT 2931 2930 2932 2938 CONECT 2932 2931 2933 2939 CONECT 2933 2932 2934 2940 CONECT 2934 2933 2935 2941 CONECT 2935 2934 2942 CONECT 2936 2937 2938 2943 CONECT 2937 2936 CONECT 2938 2931 2936 CONECT 2939 2932 CONECT 2940 2933 2944 CONECT 2941 2930 2934 CONECT 2942 2935 CONECT 2943 2936 CONECT 2944 2940 2945 2955 CONECT 2945 2944 2946 2952 CONECT 2946 2945 2947 2953 CONECT 2947 2946 2948 2954 CONECT 2948 2947 2949 2955 CONECT 2949 2948 2956 CONECT 2950 2951 2952 2957 CONECT 2951 2950 CONECT 2952 2945 2950 CONECT 2953 2946 CONECT 2954 2947 2958 CONECT 2955 2944 2948 CONECT 2956 2949 CONECT 2957 2950 CONECT 2958 2954 2959 2969 CONECT 2959 2958 2960 2966 CONECT 2960 2959 2961 2967 CONECT 2961 2960 2962 2968 CONECT 2962 2961 2963 2969 CONECT 2963 2962 2970 CONECT 2964 2965 2966 2971 CONECT 2965 2964 CONECT 2966 2959 2964 CONECT 2967 2960 CONECT 2968 2961 CONECT 2969 2958 2962 CONECT 2970 2963 CONECT 2971 2964 MASTER 485 0 11 22 0 0 0 6 3431 2 128 32 END