HEADER TRANSCRIPTION/RNA/DNA 15-OCT-12 4HKQ TITLE XMRV REVERSE TRANSCRIPTASE IN COMPLEX WITH RNA/DNA HYBRID COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H P80; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: REVERSE TRANSCRIPTASE, UNP RESIDUES 658-1328; COMPND 5 SYNONYM: RT; COMPND 6 EC: 2.7.7.49, 2.7.7.7, 3.1.26.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*AP*AP*CP*AP*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP* COMPND 12 CP*AP*U)-3'); COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(*TP*GP*GP*AP*AP*TP*CP*A*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*TP*CP*TP*G)- COMPND 18 3'); COMPND 19 CHAIN: F; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOTROPIC MULV-RELATED VIRUS; SOURCE 3 ORGANISM_COMMON: XMRV; SOURCE 4 ORGANISM_TAXID: 373193; SOURCE 5 STRAIN: VP62; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: RANDOM SEQUENCE FOR RNA; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: RANDOM SEQUENCE FOR DNA KEYWDS PROTEIN-DNA-RNA COMPLEX, REVERSE TRANSCRIPTION, TRANSCRIPTION-RNA-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.NOWAK,W.POTRZEBOWSKI,P.V.KONAREV,J.W.RAUSCH,M.K.BONA,D.I.SVERGUN, AUTHOR 2 J.M.BUJNICKI,S.F.J.LE GRICE,M.NOWOTNY REVDAT 3 08-NOV-23 4HKQ 1 SEQADV REVDAT 2 03-JUL-13 4HKQ 1 JRNL TITLE REVDAT 1 20-FEB-13 4HKQ 0 JRNL AUTH E.NOWAK,W.POTRZEBOWSKI,P.V.KONAREV,J.W.RAUSCH,M.K.BONA, JRNL AUTH 2 D.I.SVERGUN,J.M.BUJNICKI,S.F.LE GRICE,M.NOWOTNY JRNL TITL STRUCTURAL ANALYSIS OF MONOMERIC RETROVIRAL REVERSE JRNL TITL 2 TRANSCRIPTASE IN COMPLEX WITH AN RNA/DNA HYBRID JRNL REF NUCLEIC ACIDS RES. V. 41 3874 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23382176 JRNL DOI 10.1093/NAR/GKT053 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 19172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6627 - 5.8029 1.00 2854 140 0.2380 0.2768 REMARK 3 2 5.8029 - 4.6115 1.00 2704 132 0.1920 0.2032 REMARK 3 3 4.6115 - 4.0302 1.00 2646 142 0.1762 0.2454 REMARK 3 4 4.0302 - 3.6625 0.99 2586 155 0.2178 0.2969 REMARK 3 5 3.6625 - 3.4003 0.98 2554 130 0.2464 0.3017 REMARK 3 6 3.4003 - 3.2001 0.95 2496 149 0.2747 0.3829 REMARK 3 7 3.2001 - 3.0400 0.91 2351 133 0.3316 0.4231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 66.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.30110 REMARK 3 B22 (A**2) : 7.30110 REMARK 3 B33 (A**2) : -14.60210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4238 REMARK 3 ANGLE : 1.011 5867 REMARK 3 CHIRALITY : 0.060 677 REMARK 3 PLANARITY : 0.005 649 REMARK 3 DIHEDRAL : 16.257 1616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-11; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; BESSY REMARK 200 BEAMLINE : ID23-2; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872; 0.979 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19791 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.1M BIS-TRIS, 0.2M REMARK 280 AMMONIUM SULFATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.91200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.06600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.06600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 151.36800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.06600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.06600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.45600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.06600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.06600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 151.36800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.06600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.06600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.45600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.91200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 THR A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 TYR A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 HIS A 11 REMARK 465 GLU A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 PRO A 17 REMARK 465 ASP A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 TRP A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 PRO A 104 REMARK 465 GLY A 105 REMARK 465 THR A 106 REMARK 465 ASN A 107 REMARK 465 PRO A 175 REMARK 465 GLU A 176 REMARK 465 MET A 177 REMARK 465 GLY A 178 REMARK 465 ILE A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 ASP A 449 REMARK 465 ARG A 450 REMARK 465 TRP A 451 REMARK 465 LEU A 452 REMARK 465 SER A 453 REMARK 465 ASN A 454 REMARK 465 GLU A 488 REMARK 465 LYS A 489 REMARK 465 GLU A 490 REMARK 465 ALA A 491 REMARK 465 PRO A 492 REMARK 465 HIS A 493 REMARK 465 ASP A 494 REMARK 465 CYS A 495 REMARK 465 LEU A 496 REMARK 465 GLU A 497 REMARK 465 ILE A 498 REMARK 465 LEU A 499 REMARK 465 ALA A 500 REMARK 465 GLU A 501 REMARK 465 THR A 502 REMARK 465 HIS A 503 REMARK 465 GLY A 504 REMARK 465 THR A 505 REMARK 465 ARG A 506 REMARK 465 PRO A 507 REMARK 465 ASP A 508 REMARK 465 LEU A 509 REMARK 465 THR A 510 REMARK 465 ASP A 511 REMARK 465 GLN A 512 REMARK 465 PRO A 513 REMARK 465 ILE A 514 REMARK 465 PRO A 515 REMARK 465 ASP A 516 REMARK 465 ALA A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 THR A 520 REMARK 465 TRP A 521 REMARK 465 TYR A 522 REMARK 465 THR A 523 REMARK 465 ASP A 524 REMARK 465 GLY A 525 REMARK 465 SER A 526 REMARK 465 SER A 527 REMARK 465 PHE A 528 REMARK 465 LEU A 529 REMARK 465 GLN A 530 REMARK 465 GLU A 531 REMARK 465 GLY A 532 REMARK 465 GLN A 533 REMARK 465 ARG A 534 REMARK 465 ARG A 535 REMARK 465 ALA A 536 REMARK 465 GLY A 537 REMARK 465 ALA A 538 REMARK 465 ALA A 539 REMARK 465 VAL A 540 REMARK 465 THR A 541 REMARK 465 THR A 542 REMARK 465 GLU A 543 REMARK 465 THR A 544 REMARK 465 GLU A 545 REMARK 465 VAL A 546 REMARK 465 ILE A 547 REMARK 465 TRP A 548 REMARK 465 ALA A 549 REMARK 465 ARG A 550 REMARK 465 ALA A 551 REMARK 465 LEU A 552 REMARK 465 PRO A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 THR A 556 REMARK 465 SER A 557 REMARK 465 ALA A 558 REMARK 465 GLN A 559 REMARK 465 ARG A 560 REMARK 465 ALA A 561 REMARK 465 GLU A 562 REMARK 465 LEU A 563 REMARK 465 ILE A 564 REMARK 465 ALA A 565 REMARK 465 LEU A 566 REMARK 465 THR A 567 REMARK 465 GLN A 568 REMARK 465 ALA A 569 REMARK 465 LEU A 570 REMARK 465 LYS A 571 REMARK 465 MET A 572 REMARK 465 ALA A 573 REMARK 465 GLU A 574 REMARK 465 GLY A 575 REMARK 465 LYS A 576 REMARK 465 LYS A 577 REMARK 465 LEU A 578 REMARK 465 ASN A 579 REMARK 465 VAL A 580 REMARK 465 TYR A 581 REMARK 465 THR A 582 REMARK 465 ASN A 583 REMARK 465 SER A 584 REMARK 465 ARG A 585 REMARK 465 TYR A 586 REMARK 465 ALA A 587 REMARK 465 PHE A 588 REMARK 465 ALA A 589 REMARK 465 THR A 590 REMARK 465 ALA A 591 REMARK 465 HIS A 592 REMARK 465 VAL A 593 REMARK 465 HIS A 594 REMARK 465 GLY A 595 REMARK 465 GLU A 596 REMARK 465 ILE A 597 REMARK 465 TYR A 598 REMARK 465 ARG A 599 REMARK 465 ARG A 600 REMARK 465 ARG A 601 REMARK 465 GLY A 602 REMARK 465 LEU A 603 REMARK 465 LEU A 604 REMARK 465 THR A 605 REMARK 465 SER A 606 REMARK 465 GLU A 607 REMARK 465 GLY A 608 REMARK 465 ARG A 609 REMARK 465 GLU A 610 REMARK 465 ILE A 611 REMARK 465 LYS A 612 REMARK 465 ASN A 613 REMARK 465 LYS A 614 REMARK 465 ASN A 615 REMARK 465 GLU A 616 REMARK 465 ILE A 617 REMARK 465 LEU A 618 REMARK 465 ALA A 619 REMARK 465 LEU A 620 REMARK 465 LEU A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 LEU A 624 REMARK 465 PHE A 625 REMARK 465 LEU A 626 REMARK 465 PRO A 627 REMARK 465 LYS A 628 REMARK 465 ARG A 629 REMARK 465 LEU A 630 REMARK 465 SER A 631 REMARK 465 ILE A 632 REMARK 465 ILE A 633 REMARK 465 HIS A 634 REMARK 465 CYS A 635 REMARK 465 PRO A 636 REMARK 465 GLY A 637 REMARK 465 HIS A 638 REMARK 465 GLN A 639 REMARK 465 LYS A 640 REMARK 465 GLY A 641 REMARK 465 ASN A 642 REMARK 465 SER A 643 REMARK 465 ALA A 644 REMARK 465 GLU A 645 REMARK 465 ALA A 646 REMARK 465 ARG A 647 REMARK 465 GLY A 648 REMARK 465 ASN A 649 REMARK 465 ARG A 650 REMARK 465 MET A 651 REMARK 465 ALA A 652 REMARK 465 ASP A 653 REMARK 465 GLN A 654 REMARK 465 ALA A 655 REMARK 465 ALA A 656 REMARK 465 ARG A 657 REMARK 465 GLU A 658 REMARK 465 ALA A 659 REMARK 465 ALA A 660 REMARK 465 MET A 661 REMARK 465 LYS A 662 REMARK 465 ALA A 663 REMARK 465 VAL A 664 REMARK 465 LEU A 665 REMARK 465 GLU A 666 REMARK 465 THR A 667 REMARK 465 SER A 668 REMARK 465 THR A 669 REMARK 465 LEU A 670 REMARK 465 LEU A 671 REMARK 465 U E 17 REMARK 465 G E 18 REMARK 465 A E 19 REMARK 465 U E 20 REMARK 465 U E 21 REMARK 465 C E 22 REMARK 465 C E 23 REMARK 465 A E 24 REMARK 465 U E 25 REMARK 465 DT F 26 REMARK 465 DG F 27 REMARK 465 DG F 28 REMARK 465 DA F 29 REMARK 465 DA F 30 REMARK 465 DT F 31 REMARK 465 DC F 32 REMARK 465 DA F 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ILE A 78 CG1 CG2 CD1 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 TYR A 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 126 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 267 CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 THR A 332 OG1 CG2 REMARK 470 LEU A 333 CG CD1 CD2 REMARK 470 ASP A 468 CG OD1 OD2 REMARK 470 DG F 34 P OP1 OP2 REMARK 470 DT F 36 C7 REMARK 470 DT F 38 C7 REMARK 470 DT F 44 C7 REMARK 470 DT F 46 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG F 40 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC F 41 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA F 42 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 43 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT F 44 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG F 47 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -69.62 -107.99 REMARK 500 PRO A 47 136.01 -32.99 REMARK 500 ALA A 54 -5.56 -59.00 REMARK 500 GLN A 63 106.89 -48.19 REMARK 500 MET A 66 -83.55 -115.20 REMARK 500 SER A 67 170.30 163.16 REMARK 500 LEU A 99 78.96 -116.54 REMARK 500 PRO A 111 39.69 -75.80 REMARK 500 ASN A 119 2.91 -68.20 REMARK 500 PHE A 168 60.99 -107.24 REMARK 500 ASP A 209 -70.46 -69.31 REMARK 500 PHE A 210 -60.13 -29.35 REMARK 500 VAL A 223 -84.09 53.29 REMARK 500 ALA A 230 -161.98 -102.45 REMARK 500 CYS A 262 64.34 34.73 REMARK 500 VAL A 288 -54.84 -122.58 REMARK 500 LEU A 327 24.99 -77.68 REMARK 500 LEU A 333 170.54 -51.23 REMARK 500 ALA A 393 147.91 -177.20 REMARK 500 VAL A 440 -7.33 -146.71 REMARK 500 THR A 482 -32.05 58.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 4HKQ A 1 671 UNP A1Z651 POL_XMRV6 658 1328 DBREF 4HKQ E 1 25 PDB 4HKQ 4HKQ 1 25 DBREF 4HKQ F 26 47 PDB 4HKQ 4HKQ 26 47 SEQADV 4HKQ MET A -9 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ SER A -8 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ HIS A -7 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ HIS A -6 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ HIS A -5 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ HIS A -4 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ HIS A -3 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ HIS A -2 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ SER A -1 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ ALA A 0 UNP A1Z651 EXPRESSION TAG SEQADV 4HKQ ASN A 583 UNP A1Z651 ASP 1240 ENGINEERED MUTATION SEQRES 1 A 681 MET SER HIS HIS HIS HIS HIS HIS SER ALA THR LEU ASN SEQRES 2 A 681 ILE GLU ASP GLU TYR ARG LEU HIS GLU THR SER LYS GLU SEQRES 3 A 681 PRO ASP VAL PRO LEU GLY SER THR TRP LEU SER ASP PHE SEQRES 4 A 681 PRO GLN ALA TRP ALA GLU THR GLY GLY MET GLY LEU ALA SEQRES 5 A 681 VAL ARG GLN ALA PRO LEU ILE ILE PRO LEU LYS ALA THR SEQRES 6 A 681 SER THR PRO VAL SER ILE LYS GLN TYR PRO MET SER GLN SEQRES 7 A 681 GLU ALA ARG LEU GLY ILE LYS PRO HIS ILE GLN ARG LEU SEQRES 8 A 681 LEU ASP GLN GLY ILE LEU VAL PRO CYS GLN SER PRO TRP SEQRES 9 A 681 ASN THR PRO LEU LEU PRO VAL LYS LYS PRO GLY THR ASN SEQRES 10 A 681 ASP TYR ARG PRO VAL GLN ASP LEU ARG GLU VAL ASN LYS SEQRES 11 A 681 ARG VAL GLU ASP ILE HIS PRO THR VAL PRO ASN PRO TYR SEQRES 12 A 681 ASN LEU LEU SER GLY LEU PRO PRO SER HIS GLN TRP TYR SEQRES 13 A 681 THR VAL LEU ASP LEU LYS ASP ALA PHE PHE CYS LEU ARG SEQRES 14 A 681 LEU HIS PRO THR SER GLN PRO LEU PHE ALA PHE GLU TRP SEQRES 15 A 681 ARG ASP PRO GLU MET GLY ILE SER GLY GLN LEU THR TRP SEQRES 16 A 681 THR ARG LEU PRO GLN GLY PHE LYS ASN SER PRO THR LEU SEQRES 17 A 681 PHE ASP GLU ALA LEU HIS ARG ASP LEU ALA ASP PHE ARG SEQRES 18 A 681 ILE GLN HIS PRO ASP LEU ILE LEU LEU GLN TYR VAL ASP SEQRES 19 A 681 ASP LEU LEU LEU ALA ALA THR SER GLU GLN ASP CYS GLN SEQRES 20 A 681 ARG GLY THR ARG ALA LEU LEU GLN THR LEU GLY ASN LEU SEQRES 21 A 681 GLY TYR ARG ALA SER ALA LYS LYS ALA GLN ILE CYS GLN SEQRES 22 A 681 LYS GLN VAL LYS TYR LEU GLY TYR LEU LEU LYS GLU GLY SEQRES 23 A 681 GLN ARG TRP LEU THR GLU ALA ARG LYS GLU THR VAL MET SEQRES 24 A 681 GLY GLN PRO THR PRO LYS THR PRO ARG GLN LEU ARG GLU SEQRES 25 A 681 PHE LEU GLY THR ALA GLY PHE CYS ARG LEU TRP ILE PRO SEQRES 26 A 681 GLY PHE ALA GLU MET ALA ALA PRO LEU TYR PRO LEU THR SEQRES 27 A 681 LYS THR GLY THR LEU PHE ASN TRP GLY PRO ASP GLN GLN SEQRES 28 A 681 LYS ALA TYR GLN GLU ILE LYS GLN ALA LEU LEU THR ALA SEQRES 29 A 681 PRO ALA LEU GLY LEU PRO ASP LEU THR LYS PRO PHE GLU SEQRES 30 A 681 LEU PHE VAL ASP GLU LYS GLN GLY TYR ALA LYS GLY VAL SEQRES 31 A 681 LEU THR GLN LYS LEU GLY PRO TRP ARG ARG PRO VAL ALA SEQRES 32 A 681 TYR LEU SER LYS LYS LEU ASP PRO VAL ALA ALA GLY TRP SEQRES 33 A 681 PRO PRO CYS LEU ARG MET VAL ALA ALA ILE ALA VAL LEU SEQRES 34 A 681 THR LYS ASP ALA GLY LYS LEU THR MET GLY GLN PRO LEU SEQRES 35 A 681 VAL ILE LEU ALA PRO HIS ALA VAL GLU ALA LEU VAL LYS SEQRES 36 A 681 GLN PRO PRO ASP ARG TRP LEU SER ASN ALA ARG MET THR SEQRES 37 A 681 HIS TYR GLN ALA MET LEU LEU ASP THR ASP ARG VAL GLN SEQRES 38 A 681 PHE GLY PRO VAL VAL ALA LEU ASN PRO ALA THR LEU LEU SEQRES 39 A 681 PRO LEU PRO GLU LYS GLU ALA PRO HIS ASP CYS LEU GLU SEQRES 40 A 681 ILE LEU ALA GLU THR HIS GLY THR ARG PRO ASP LEU THR SEQRES 41 A 681 ASP GLN PRO ILE PRO ASP ALA ASP TYR THR TRP TYR THR SEQRES 42 A 681 ASP GLY SER SER PHE LEU GLN GLU GLY GLN ARG ARG ALA SEQRES 43 A 681 GLY ALA ALA VAL THR THR GLU THR GLU VAL ILE TRP ALA SEQRES 44 A 681 ARG ALA LEU PRO ALA GLY THR SER ALA GLN ARG ALA GLU SEQRES 45 A 681 LEU ILE ALA LEU THR GLN ALA LEU LYS MET ALA GLU GLY SEQRES 46 A 681 LYS LYS LEU ASN VAL TYR THR ASN SER ARG TYR ALA PHE SEQRES 47 A 681 ALA THR ALA HIS VAL HIS GLY GLU ILE TYR ARG ARG ARG SEQRES 48 A 681 GLY LEU LEU THR SER GLU GLY ARG GLU ILE LYS ASN LYS SEQRES 49 A 681 ASN GLU ILE LEU ALA LEU LEU LYS ALA LEU PHE LEU PRO SEQRES 50 A 681 LYS ARG LEU SER ILE ILE HIS CYS PRO GLY HIS GLN LYS SEQRES 51 A 681 GLY ASN SER ALA GLU ALA ARG GLY ASN ARG MET ALA ASP SEQRES 52 A 681 GLN ALA ALA ARG GLU ALA ALA MET LYS ALA VAL LEU GLU SEQRES 53 A 681 THR SER THR LEU LEU SEQRES 1 E 25 A A C A G A G U G C G A C SEQRES 2 E 25 A C C U G A U U C C A U SEQRES 1 F 22 DT DG DG DA DA DT DC DA DG DG DT DG DT SEQRES 2 F 22 DC DG DC DA DC DT DC DT DG FORMUL 4 HOH *37(H2 O) HELIX 1 1 PHE A 29 ALA A 32 5 4 HELIX 2 2 TRP A 33 GLY A 38 1 6 HELIX 3 3 SER A 67 ILE A 74 1 8 HELIX 4 4 ILE A 74 ASP A 83 1 10 HELIX 5 5 GLU A 117 VAL A 122 1 6 HELIX 6 6 ASN A 134 LEU A 139 5 6 HELIX 7 7 ALA A 154 LEU A 158 5 5 HELIX 8 8 SER A 164 LEU A 167 5 4 HELIX 9 9 ASN A 194 HIS A 214 1 21 HELIX 10 10 SER A 232 GLY A 251 1 20 HELIX 11 11 THR A 281 GLY A 290 1 10 HELIX 12 12 THR A 296 GLY A 308 1 13 HELIX 13 13 PHE A 309 ILE A 314 5 6 HELIX 14 14 GLY A 316 ALA A 321 1 6 HELIX 15 15 LEU A 324 THR A 328 5 5 HELIX 16 16 GLY A 337 THR A 353 1 17 HELIX 17 17 ASP A 400 TRP A 406 1 7 HELIX 18 18 PRO A 407 MET A 428 1 22 HELIX 19 19 VAL A 440 GLN A 446 1 7 HELIX 20 20 ARG A 456 LEU A 465 1 10 SHEET 1 A 3 LEU A 87 PRO A 89 0 SHEET 2 A 3 LEU A 183 TRP A 185 -1 O THR A 184 N VAL A 88 SHEET 3 A 3 ALA A 169 PHE A 170 -1 N PHE A 170 O LEU A 183 SHEET 1 B 4 ILE A 218 TYR A 222 0 SHEET 2 B 4 ASP A 225 ALA A 230 -1 O ASP A 225 N TYR A 222 SHEET 3 B 4 TRP A 145 ASP A 150 -1 N TRP A 145 O ALA A 230 SHEET 4 B 4 GLN A 260 GLN A 263 -1 O GLN A 263 N TYR A 146 SHEET 1 C 4 GLN A 265 TYR A 268 0 SHEET 2 C 4 TYR A 271 LYS A 274 -1 O LEU A 273 N VAL A 266 SHEET 3 C 4 GLN A 277 LEU A 280 -1 O TRP A 279 N LEU A 272 SHEET 4 C 4 LEU A 357 GLY A 358 -1 O LEU A 357 N ARG A 278 SHEET 1 D 5 TRP A 388 LYS A 398 0 SHEET 2 D 5 TYR A 376 LEU A 385 -1 N LEU A 381 O VAL A 392 SHEET 3 D 5 PHE A 366 LYS A 373 -1 N GLU A 367 O THR A 382 SHEET 4 D 5 LEU A 432 ALA A 436 1 O LEU A 435 N LEU A 368 SHEET 5 D 5 VAL A 470 VAL A 475 1 O GLN A 471 N ILE A 434 SHEET 1 E 2 ALA A 477 LEU A 478 0 SHEET 2 E 2 PRO A 485 LEU A 486 -1 O LEU A 486 N ALA A 477 CRYST1 98.132 98.132 201.824 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004955 0.00000