HEADER DNA BINDING PROTEIN 17-OCT-12 4HLX TITLE THE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF VIRF-1 FROM THE TITLE 2 ONCOGENIC KSHV COMPND MOL_ID: 1; COMPND 2 MOLECULE: K9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, UNP RESIDUES 88-196; COMPND 5 SYNONYM: LATENT VIRAL INTERFERON REGULATORY FACTOR, LYTIC VIRAL COMPND 6 INTERFERON REGULATORY FACTOR, ORF K9, VIRF-1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_COMMON: HHV-8; SOURCE 4 ORGANISM_TAXID: 37296; SOURCE 5 GENE: ORF K9, VIRF, VIRF-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3-ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HELIX-TURN-HELIX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.HEW,R.VENKATACHALAM REVDAT 2 05-FEB-14 4HLX 1 JRNL REVDAT 1 13-MAR-13 4HLX 0 JRNL AUTH K.HEW,S.L.DAHLROTH,R.VENKATACHALAM,F.NASERTORABI,B.T.LIM, JRNL AUTH 2 T.CORNVIK,P.NORDLUND JRNL TITL THE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF VIRF-1 JRNL TITL 2 FROM THE ONCOGENIC KSHV REVEALS A CONSERVED FOLD FOR DNA JRNL TITL 3 BINDING AND REINFORCES ITS ROLE AS A TRANSCRIPTION FACTOR. JRNL REF NUCLEIC ACIDS RES. V. 41 4295 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23435230 JRNL DOI 10.1093/NAR/GKT082 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 17306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.2929 - 4.3152 0.99 3206 161 0.2251 0.2417 REMARK 3 2 4.3152 - 3.4286 0.77 2252 130 0.2272 0.2384 REMARK 3 3 3.4286 - 2.9963 0.96 2888 159 0.2586 0.3470 REMARK 3 4 2.9963 - 2.7228 0.98 3032 167 0.2818 0.2911 REMARK 3 5 2.7228 - 2.5279 0.68 2086 114 0.3094 0.3780 REMARK 3 6 2.5279 - 2.3790 0.95 2956 155 0.2834 0.3672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3286 REMARK 3 ANGLE : 0.567 4416 REMARK 3 CHIRALITY : 0.036 453 REMARK 3 PLANARITY : 0.002 579 REMARK 3 DIHEDRAL : 10.535 1230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96722 REMARK 200 MONOCHROMATOR : RH COATED MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.379 REMARK 200 RESOLUTION RANGE LOW (A) : 23.292 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7, 27% JEFFAMINE-ED REMARK 280 2001, 10 MM ATP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.42150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 114.23100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.42150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 114.23100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.42150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 114.23100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.42150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.23100 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 114.23100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 114.23100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.23100 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 114.23100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.42150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.42150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 64.42150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 32.88500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 64.42150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 61 REMARK 465 ASN A 62 REMARK 465 MET A 63 REMARK 465 PRO A 64 REMARK 465 VAL A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 109 REMARK 465 PRO A 110 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 MET B 63 REMARK 465 PRO B 64 REMARK 465 VAL B 65 REMARK 465 ASP B 66 REMARK 465 ALA B 67 REMARK 465 LYS B 109 REMARK 465 PRO B 110 REMARK 465 MET C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 SER C -14 REMARK 465 SER C -13 REMARK 465 GLY C -12 REMARK 465 VAL C -11 REMARK 465 ASP C -10 REMARK 465 LEU C -9 REMARK 465 GLY C -8 REMARK 465 THR C -7 REMARK 465 GLU C -6 REMARK 465 ASN C -5 REMARK 465 LEU C -4 REMARK 465 TYR C -3 REMARK 465 PHE C -2 REMARK 465 GLN C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 ALA C 4 REMARK 465 ASN C 62 REMARK 465 MET C 63 REMARK 465 PRO C 64 REMARK 465 VAL C 65 REMARK 465 ASP C 66 REMARK 465 LYS C 109 REMARK 465 PRO C 110 REMARK 465 MET D -21 REMARK 465 HIS D -20 REMARK 465 HIS D -19 REMARK 465 HIS D -18 REMARK 465 HIS D -17 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 SER D -14 REMARK 465 SER D -13 REMARK 465 GLY D -12 REMARK 465 VAL D -11 REMARK 465 ASP D -10 REMARK 465 LEU D -9 REMARK 465 GLY D -8 REMARK 465 THR D -7 REMARK 465 GLU D -6 REMARK 465 ASN D -5 REMARK 465 LEU D -4 REMARK 465 TYR D -3 REMARK 465 PHE D -2 REMARK 465 GLN D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 ALA D 4 REMARK 465 ASN D 62 REMARK 465 MET D 63 REMARK 465 PRO D 64 REMARK 465 VAL D 65 REMARK 465 ASP D 66 REMARK 465 LYS D 109 REMARK 465 PRO D 110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 97 CG CD OE1 NE2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 27 CG CD OE1 OE2 REMARK 470 GLU C 28 CG CD OE1 OE2 REMARK 470 ARG C 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 ARG C 73 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 97 CG CD OE1 NE2 REMARK 470 ASP C 98 CG OD1 OD2 REMARK 470 VAL C 104 CG1 CG2 REMARK 470 GLU D 27 CG CD OE1 OE2 REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 ARG D 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 93 CG CD CE NZ REMARK 470 GLN D 97 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 7 CD REMARK 480 ASP A 26 CB REMARK 480 GLU A 27 CB CG REMARK 480 ARG A 29 CZ NH1 NH2 REMARK 480 ARG A 33 CG NH2 REMARK 480 ARG A 47 CG CD REMARK 480 ARG A 77 CZ NH1 NH2 REMARK 480 GLN A 97 CG REMARK 480 SER B 5 OG REMARK 480 LYS B 7 CD REMARK 480 GLU B 27 CB CG REMARK 480 ARG B 29 NE REMARK 480 LYS B 70 NZ REMARK 480 ARG B 76 CZ NH1 NH2 REMARK 480 ARG B 77 NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 202 O HOH C 222 2.02 REMARK 500 O HOH D 229 O HOH D 230 2.06 REMARK 500 O HOH A 220 O HOH A 222 2.10 REMARK 500 O HOH D 229 O HOH D 234 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 36 33.92 -142.83 REMARK 500 VAL C 36 39.01 -140.00 REMARK 500 SER C 96 -179.22 -65.49 REMARK 500 VAL D 36 31.46 -142.53 REMARK 500 ARG D 60 45.45 -145.22 REMARK 500 THR D 72 40.49 -104.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HLY RELATED DB: PDB DBREF 4HLX A 2 110 UNP Q77Q82 Q77Q82_HHV8 88 196 DBREF 4HLX B 2 110 UNP Q77Q82 Q77Q82_HHV8 88 196 DBREF 4HLX C 2 110 UNP Q77Q82 Q77Q82_HHV8 88 196 DBREF 4HLX D 2 110 UNP Q77Q82 Q77Q82_HHV8 88 196 SEQADV 4HLX MET A -21 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS A -20 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS A -19 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS A -18 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS A -17 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS A -16 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS A -15 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER A -14 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER A -13 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY A -12 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX VAL A -11 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASP A -10 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU A -9 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY A -8 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX THR A -7 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLU A -6 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASN A -5 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU A -4 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX TYR A -3 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX PHE A -2 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLN A -1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER A 0 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET A 1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET B -21 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS B -20 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS B -19 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS B -18 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS B -17 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS B -16 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS B -15 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER B -14 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER B -13 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY B -12 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX VAL B -11 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASP B -10 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU B -9 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY B -8 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX THR B -7 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLU B -6 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASN B -5 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU B -4 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX TYR B -3 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX PHE B -2 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLN B -1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER B 0 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET B 1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET C -21 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS C -20 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS C -19 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS C -18 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS C -17 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS C -16 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS C -15 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER C -14 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER C -13 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY C -12 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX VAL C -11 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASP C -10 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU C -9 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY C -8 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX THR C -7 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLU C -6 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASN C -5 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU C -4 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX TYR C -3 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX PHE C -2 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLN C -1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER C 0 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET C 1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET D -21 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS D -20 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS D -19 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS D -18 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS D -17 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS D -16 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX HIS D -15 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER D -14 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER D -13 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY D -12 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX VAL D -11 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASP D -10 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU D -9 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLY D -8 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX THR D -7 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLU D -6 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX ASN D -5 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX LEU D -4 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX TYR D -3 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX PHE D -2 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX GLN D -1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX SER D 0 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLX MET D 1 UNP Q77Q82 EXPRESSION TAG SEQRES 1 A 132 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 132 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS ALA SEQRES 3 A 132 SER ILE LYS ASP TRP ILE VAL CYS GLN VAL ASN SER GLY SEQRES 4 A 132 LYS PHE PRO GLY VAL GLU TRP GLU ASP GLU GLU ARG THR SEQRES 5 A 132 ARG PHE ARG ILE PRO VAL THR PRO LEU ALA ASP PRO CYS SEQRES 6 A 132 PHE GLU TRP ARG ARG ASP GLY GLU LEU GLY VAL VAL TYR SEQRES 7 A 132 ILE ARG GLU ARG GLY ASN MET PRO VAL ASP ALA SER PHE SEQRES 8 A 132 LYS GLY THR ARG GLY ARG ARG ARG MET LEU ALA ALA LEU SEQRES 9 A 132 ARG ARG THR ARG GLY LEU GLN GLU ILE GLY LYS GLY ILE SEQRES 10 A 132 SER GLN ASP GLY HIS HIS PHE LEU VAL PHE ARG VAL ARG SEQRES 11 A 132 LYS PRO SEQRES 1 B 132 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 132 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS ALA SEQRES 3 B 132 SER ILE LYS ASP TRP ILE VAL CYS GLN VAL ASN SER GLY SEQRES 4 B 132 LYS PHE PRO GLY VAL GLU TRP GLU ASP GLU GLU ARG THR SEQRES 5 B 132 ARG PHE ARG ILE PRO VAL THR PRO LEU ALA ASP PRO CYS SEQRES 6 B 132 PHE GLU TRP ARG ARG ASP GLY GLU LEU GLY VAL VAL TYR SEQRES 7 B 132 ILE ARG GLU ARG GLY ASN MET PRO VAL ASP ALA SER PHE SEQRES 8 B 132 LYS GLY THR ARG GLY ARG ARG ARG MET LEU ALA ALA LEU SEQRES 9 B 132 ARG ARG THR ARG GLY LEU GLN GLU ILE GLY LYS GLY ILE SEQRES 10 B 132 SER GLN ASP GLY HIS HIS PHE LEU VAL PHE ARG VAL ARG SEQRES 11 B 132 LYS PRO SEQRES 1 C 132 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 132 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS ALA SEQRES 3 C 132 SER ILE LYS ASP TRP ILE VAL CYS GLN VAL ASN SER GLY SEQRES 4 C 132 LYS PHE PRO GLY VAL GLU TRP GLU ASP GLU GLU ARG THR SEQRES 5 C 132 ARG PHE ARG ILE PRO VAL THR PRO LEU ALA ASP PRO CYS SEQRES 6 C 132 PHE GLU TRP ARG ARG ASP GLY GLU LEU GLY VAL VAL TYR SEQRES 7 C 132 ILE ARG GLU ARG GLY ASN MET PRO VAL ASP ALA SER PHE SEQRES 8 C 132 LYS GLY THR ARG GLY ARG ARG ARG MET LEU ALA ALA LEU SEQRES 9 C 132 ARG ARG THR ARG GLY LEU GLN GLU ILE GLY LYS GLY ILE SEQRES 10 C 132 SER GLN ASP GLY HIS HIS PHE LEU VAL PHE ARG VAL ARG SEQRES 11 C 132 LYS PRO SEQRES 1 D 132 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 D 132 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS ALA SEQRES 3 D 132 SER ILE LYS ASP TRP ILE VAL CYS GLN VAL ASN SER GLY SEQRES 4 D 132 LYS PHE PRO GLY VAL GLU TRP GLU ASP GLU GLU ARG THR SEQRES 5 D 132 ARG PHE ARG ILE PRO VAL THR PRO LEU ALA ASP PRO CYS SEQRES 6 D 132 PHE GLU TRP ARG ARG ASP GLY GLU LEU GLY VAL VAL TYR SEQRES 7 D 132 ILE ARG GLU ARG GLY ASN MET PRO VAL ASP ALA SER PHE SEQRES 8 D 132 LYS GLY THR ARG GLY ARG ARG ARG MET LEU ALA ALA LEU SEQRES 9 D 132 ARG ARG THR ARG GLY LEU GLN GLU ILE GLY LYS GLY ILE SEQRES 10 D 132 SER GLN ASP GLY HIS HIS PHE LEU VAL PHE ARG VAL ARG SEQRES 11 D 132 LYS PRO FORMUL 5 HOH *117(H2 O) HELIX 1 1 SER A 5 GLY A 17 1 13 HELIX 2 2 GLU A 45 GLY A 50 1 6 HELIX 3 3 GLY A 50 ARG A 60 1 11 HELIX 4 4 THR A 72 ARG A 83 1 12 HELIX 5 5 SER B 5 GLY B 17 1 13 HELIX 6 6 GLU B 45 GLY B 50 1 6 HELIX 7 7 GLY B 50 GLY B 61 1 12 HELIX 8 8 THR B 72 ARG B 83 1 12 HELIX 9 9 ILE C 6 GLY C 17 1 12 HELIX 10 10 GLU C 45 GLY C 50 1 6 HELIX 11 11 GLY C 50 GLY C 61 1 12 HELIX 12 12 THR C 72 ARG C 83 1 12 HELIX 13 13 ILE D 6 GLY D 17 1 12 HELIX 14 14 GLU D 45 GLY D 50 1 6 HELIX 15 15 GLY D 50 GLY D 61 1 12 HELIX 16 16 THR D 72 ARG D 83 1 12 SHEET 1 A 3 ARG A 31 PRO A 35 0 SHEET 2 A 3 HIS A 101 VAL A 107 -1 O PHE A 105 N PHE A 32 SHEET 3 A 3 LEU A 88 ILE A 95 -1 N ILE A 91 O VAL A 104 SHEET 1 B 3 ARG B 31 PRO B 35 0 SHEET 2 B 3 HIS B 101 VAL B 107 -1 O LEU B 103 N ILE B 34 SHEET 3 B 3 LEU B 88 ILE B 95 -1 N GLN B 89 O ARG B 106 SHEET 1 C 3 ARG C 31 PRO C 35 0 SHEET 2 C 3 HIS C 101 VAL C 107 -1 O PHE C 105 N PHE C 32 SHEET 3 C 3 LEU C 88 ILE C 95 -1 N GLY C 92 O VAL C 104 SHEET 1 D 3 ARG D 31 PRO D 35 0 SHEET 2 D 3 HIS D 101 VAL D 107 -1 O LEU D 103 N ILE D 34 SHEET 3 D 3 LEU D 88 ILE D 95 -1 N GLY D 92 O VAL D 104 SSBOND 1 CYS A 12 CYS C 12 1555 14565 1.91 SSBOND 2 CYS B 12 CYS D 12 1555 2565 2.02 CRYST1 65.770 128.843 228.462 90.00 90.00 90.00 F 2 2 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004377 0.00000