HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 17-OCT-12 4HM4 TITLE NAPHTHALENE 1,2-DIOXYGENASE BOUND TO INDAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAPHTHALENE 1,2-DIOXYGENASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAPHTHALENE 1,2-DIOXYGENASE ISP ALPHA; COMPND 5 EC: 1.14.12.12; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NAPHTHALENE 1,2-DIOXYGENASE SUBUNIT BETA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NAPHTHALENE 1,2-DIOXYGENASE ISP BETA; COMPND 11 EC: 1.14.12.12; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. C18; SOURCE 3 ORGANISM_TAXID: 69011; SOURCE 4 STRAIN: NCIB 9816-4; SOURCE 5 GENE: DOXB, NC_004999.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDTG121; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. C18; SOURCE 13 ORGANISM_TAXID: 69011; SOURCE 14 STRAIN: NCIB 9816-4; SOURCE 15 GENE: DOXD, NC_004999.1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PDTG121 KEYWDS OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.FERRARO,S.RAMASWAMY REVDAT 1 30-OCT-13 4HM4 0 JRNL AUTH D.J.FERRARO,S.RAMASWAMY JRNL TITL NAPHTHALENE 1,2-DIOXYGENASE BOUND TO INDAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.710 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 124170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.9470 - 4.6240 1.00 7726 399 0.1643 0.1942 REMARK 3 2 4.6240 - 3.6851 1.00 7678 436 0.1394 0.1582 REMARK 3 3 3.6851 - 3.2236 1.00 7695 436 0.1485 0.1843 REMARK 3 4 3.2236 - 2.9309 1.00 7706 410 0.1646 0.1654 REMARK 3 5 2.9309 - 2.7219 1.00 7716 408 0.1611 0.1901 REMARK 3 6 2.7219 - 2.5621 1.00 7664 462 0.1488 0.1843 REMARK 3 7 2.5621 - 2.4343 1.00 7725 409 0.1420 0.1919 REMARK 3 8 2.4343 - 2.3287 1.00 7693 422 0.1368 0.1778 REMARK 3 9 2.3287 - 2.2393 1.00 7719 402 0.1357 0.1747 REMARK 3 10 2.2393 - 2.1622 1.00 7745 374 0.1352 0.1865 REMARK 3 11 2.1622 - 2.0947 1.00 7730 390 0.1333 0.1871 REMARK 3 12 2.0947 - 2.0350 1.00 7765 403 0.1372 0.1748 REMARK 3 13 2.0350 - 1.9815 1.00 7690 395 0.1355 0.1840 REMARK 3 14 1.9815 - 1.9332 1.00 7728 384 0.1437 0.1840 REMARK 3 15 1.9332 - 1.8894 1.00 7691 407 0.1439 0.1778 REMARK 3 16 1.8894 - 1.8492 1.00 7745 436 0.1422 0.1921 REMARK 3 17 1.8492 - 1.8123 1.00 7709 423 0.1476 0.2058 REMARK 3 18 1.8123 - 1.7781 1.00 7744 350 0.1578 0.2174 REMARK 3 19 1.7781 - 1.7464 1.00 7684 414 0.1626 0.2190 REMARK 3 20 1.7464 - 1.7168 1.00 7748 426 0.1662 0.2107 REMARK 3 21 1.7168 - 1.6892 1.00 7717 423 0.1722 0.2174 REMARK 3 22 1.6892 - 1.6632 1.00 7680 415 0.1824 0.2454 REMARK 3 23 1.6632 - 1.6388 1.00 7726 384 0.1920 0.2602 REMARK 3 24 1.6388 - 1.6157 1.00 7712 410 0.2037 0.2765 REMARK 3 25 1.6157 - 1.5939 1.00 7719 423 0.2147 0.2737 REMARK 3 26 1.5939 - 1.5732 0.99 7653 393 0.2355 0.2873 REMARK 3 27 1.5732 - 1.5536 0.96 7476 340 0.2529 0.2979 REMARK 3 28 1.5536 - 1.5349 0.95 7327 377 0.2705 0.3219 REMARK 3 29 1.5349 - 1.5170 0.92 7086 379 0.2906 0.3263 REMARK 3 30 1.5170 - 1.5000 0.90 6912 390 0.2953 0.3314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5260 REMARK 3 ANGLE : 1.156 7101 REMARK 3 CHIRALITY : 0.077 740 REMARK 3 PLANARITY : 0.004 926 REMARK 3 DIHEDRAL : 13.760 1905 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : ALS; NULL REMARK 200 BEAMLINE : 4.2.2; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04; NULL REMARK 200 MONOCHROMATOR : SI(111); SAGITALLY FOCUSED REMARK 200 SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : NOIR-1; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.730 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.33 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9-2.2 M AMMONIUM SULFATE, 4-6%, REMARK 280 DIOXANE, 0.1 M MES, PH 5.0, VAPOR DIFFUSION, TEMPERATURE 279.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.04850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.44252 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 69.40733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.04850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.44252 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 69.40733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.04850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.44252 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 69.40733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.04850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.44252 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.40733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.04850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.44252 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.40733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.04850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.44252 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.40733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.88504 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 138.81467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 80.88504 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 138.81467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 80.88504 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 138.81467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 80.88504 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 138.81467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 80.88504 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 138.81467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 80.88504 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 138.81467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 39000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -251.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 70.04850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 121.32756 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -70.04850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 121.32756 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1167 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1598 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 447 REMARK 465 ASP A 448 REMARK 465 ARG A 449 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1192 O HOH A 1599 3565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 34 -61.25 -108.73 REMARK 500 LEU A 42 -61.49 -106.94 REMARK 500 HIS A 83 -87.37 -85.58 REMARK 500 TYR A 103 -71.19 -85.45 REMARK 500 LYS A 192 56.58 -92.91 REMARK 500 ASP A 255 -0.76 73.68 REMARK 500 CYS A 309 -53.33 73.83 REMARK 500 ASN B 23 -116.82 -71.59 REMARK 500 ARG B 76 -5.58 -143.79 REMARK 500 ASN B 81 116.57 -34.56 REMARK 500 ASN B 88 73.95 -156.31 REMARK 500 HIS B 187 -38.42 71.36 REMARK 500 MET B 190 49.52 -78.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1005 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 213 NE2 REMARK 620 2 HIS A 208 NE2 102.2 REMARK 620 3 ASP A 362 OD1 107.7 99.0 REMARK 620 4 ASP A 362 OD2 88.6 154.4 55.5 REMARK 620 5 HOH A1409 O 135.5 100.0 106.3 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1004 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 ND1 REMARK 620 2 FES A1004 S1 115.3 REMARK 620 3 FES A1004 S2 118.4 104.7 REMARK 620 4 HIS A 104 ND1 87.5 115.4 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1004 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 FES A1004 S1 108.3 REMARK 620 3 FES A1004 S2 114.8 105.4 REMARK 620 4 CYS A 81 SG 108.3 107.9 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 16N A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HM0 RELATED DB: PDB REMARK 900 RELATED ID: 4HM2 RELATED DB: PDB REMARK 900 RELATED ID: 4HM3 RELATED DB: PDB REMARK 900 RELATED ID: 4HM5 RELATED DB: PDB REMARK 900 RELATED ID: 4HM6 RELATED DB: PDB REMARK 900 RELATED ID: 4HM7 RELATED DB: PDB REMARK 900 RELATED ID: 4HM1 RELATED DB: PDB DBREF 4HM4 A 1 449 UNP P0A111 NDOB_PSEU8 1 449 DBREF 4HM4 B 0 193 UNP P0A113 NDOC_PSEU8 1 194 SEQRES 1 A 449 MET ASN TYR ASN ASN LYS ILE LEU VAL SER GLU SER GLY SEQRES 2 A 449 LEU SER GLN LYS HIS LEU ILE HIS GLY ASP GLU GLU LEU SEQRES 3 A 449 PHE GLN HIS GLU LEU LYS THR ILE PHE ALA ARG ASN TRP SEQRES 4 A 449 LEU PHE LEU THR HIS ASP SER LEU ILE PRO ALA PRO GLY SEQRES 5 A 449 ASP TYR VAL THR ALA LYS MET GLY ILE ASP GLU VAL ILE SEQRES 6 A 449 VAL SER ARG GLN ASN ASP GLY SER ILE ARG ALA PHE LEU SEQRES 7 A 449 ASN VAL CYS ARG HIS ARG GLY LYS THR LEU VAL SER VAL SEQRES 8 A 449 GLU ALA GLY ASN ALA LYS GLY PHE VAL CYS SER TYR HIS SEQRES 9 A 449 GLY TRP GLY PHE GLY SER ASN GLY GLU LEU GLN SER VAL SEQRES 10 A 449 PRO PHE GLU LYS ASP LEU TYR GLY GLU SER LEU ASN LYS SEQRES 11 A 449 LYS CYS LEU GLY LEU LYS GLU VAL ALA ARG VAL GLU SER SEQRES 12 A 449 PHE HIS GLY PHE ILE TYR GLY CYS PHE ASP GLN GLU ALA SEQRES 13 A 449 PRO PRO LEU MET ASP TYR LEU GLY ASP ALA ALA TRP TYR SEQRES 14 A 449 LEU GLU PRO MET PHE LYS HIS SER GLY GLY LEU GLU LEU SEQRES 15 A 449 VAL GLY PRO PRO GLY LYS VAL VAL ILE LYS ALA ASN TRP SEQRES 16 A 449 LYS ALA PRO ALA GLU ASN PHE VAL GLY ASP ALA TYR HIS SEQRES 17 A 449 VAL GLY TRP THR HIS ALA SER SER LEU ARG SER GLY GLU SEQRES 18 A 449 SER ILE PHE SER SER LEU ALA GLY ASN ALA ALA LEU PRO SEQRES 19 A 449 PRO GLU GLY ALA GLY LEU GLN MET THR SER LYS TYR GLY SEQRES 20 A 449 SER GLY MET GLY VAL LEU TRP ASP GLY TYR SER GLY VAL SEQRES 21 A 449 HIS SER ALA ASP LEU VAL PRO GLU LEU MET ALA PHE GLY SEQRES 22 A 449 GLY ALA LYS GLN GLU ARG LEU ASN LYS GLU ILE GLY ASP SEQRES 23 A 449 VAL ARG ALA ARG ILE TYR ARG SER HIS LEU ASN CYS THR SEQRES 24 A 449 VAL PHE PRO ASN ASN SER MET LEU THR CYS SER GLY VAL SEQRES 25 A 449 PHE LYS VAL TRP ASN PRO ILE ASP ALA ASN THR THR GLU SEQRES 26 A 449 VAL TRP THR TYR ALA ILE VAL GLU LYS ASP MET PRO GLU SEQRES 27 A 449 ASP LEU LYS ARG ARG LEU ALA ASP SER VAL GLN ARG THR SEQRES 28 A 449 PHE GLY PRO ALA GLY PHE TRP GLU SER ASP ASP ASN ASP SEQRES 29 A 449 ASN MET GLU THR ALA SER GLN ASN GLY LYS LYS TYR GLN SEQRES 30 A 449 SER ARG ASP SER ASP LEU LEU SER ASN LEU GLY PHE GLY SEQRES 31 A 449 GLU ASP VAL TYR GLY ASP ALA VAL TYR PRO GLY VAL VAL SEQRES 32 A 449 GLY LYS SER ALA ILE GLY GLU THR SER TYR ARG GLY PHE SEQRES 33 A 449 TYR ARG ALA TYR GLN ALA HIS VAL SER SER SER ASN TRP SEQRES 34 A 449 ALA GLU PHE GLU HIS ALA SER SER THR TRP HIS THR GLU SEQRES 35 A 449 LEU THR LYS THR THR ASP ARG SEQRES 1 B 194 MET MET ILE ASN ILE GLN GLU ASP LYS LEU VAL SER ALA SEQRES 2 B 194 HIS ASP ALA GLU GLU ILE LEU ARG PHE PHE ASN CYS HIS SEQRES 3 B 194 ASP SER ALA LEU GLN GLN GLU ALA THR THR LEU LEU THR SEQRES 4 B 194 GLN GLU ALA HIS LEU LEU ASP ILE GLN ALA TYR ARG ALA SEQRES 5 B 194 TRP LEU GLU HIS CYS VAL GLY SER GLU VAL GLN TYR GLN SEQRES 6 B 194 VAL ILE SER ARG GLU LEU ARG ALA ALA SER GLU ARG ARG SEQRES 7 B 194 TYR LYS LEU ASN GLU ALA MET ASN VAL TYR ASN GLU ASN SEQRES 8 B 194 PHE GLN GLN LEU LYS VAL ARG VAL GLU HIS GLN LEU ASP SEQRES 9 B 194 PRO GLN ASN TRP GLY ASN SER PRO LYS LEU ARG PHE THR SEQRES 10 B 194 ARG PHE ILE THR ASN VAL GLN ALA ALA MET ASP VAL ASN SEQRES 11 B 194 ASP LYS GLU LEU LEU HIS ILE ARG SER ASN VAL ILE LEU SEQRES 12 B 194 HIS ARG ALA ARG ARG GLY ASN GLN VAL ASP VAL PHE TYR SEQRES 13 B 194 ALA ALA ARG GLU ASP LYS TRP LYS ARG GLY GLU GLY GLY SEQRES 14 B 194 VAL ARG LYS LEU VAL GLN ARG PHE VAL ASP TYR PRO GLU SEQRES 15 B 194 ARG ILE LEU GLN THR HIS ASN LEU MET VAL PHE LEU HET EDO A1001 4 HET EDO A1002 4 HET SO4 A1003 5 HET FES A1004 4 HET FE A1005 1 HET 16N A1006 9 HET EDO A1007 4 HET EDO A1008 4 HET SO4 A1009 5 HET EDO B1001 4 HET EDO B1002 4 HET EDO B1003 4 HET SO4 B1004 5 HET SO4 B1005 5 HET EDO B1006 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE FE (III) ION HETNAM 16N 2,3-DIHYDRO-1H-INDENE HETSYN EDO ETHYLENE GLYCOL HETSYN 16N INDAN FORMUL 3 EDO 8(C2 H6 O2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 FES FE2 S2 FORMUL 7 FE FE 3+ FORMUL 8 16N C9 H10 FORMUL 18 HOH *699(H2 O) HELIX 1 1 SER A 10 GLY A 13 5 4 HELIX 2 2 LEU A 19 GLY A 22 5 4 HELIX 3 3 ASP A 23 ILE A 34 1 12 HELIX 4 4 SER A 46 ILE A 48 5 3 HELIX 5 5 PHE A 119 TYR A 124 1 6 HELIX 6 6 ASN A 129 LEU A 133 5 5 HELIX 7 7 PRO A 158 GLY A 164 1 7 HELIX 8 8 ASP A 165 LYS A 175 1 11 HELIX 9 9 TRP A 195 ASP A 205 1 11 HELIX 10 10 HIS A 208 HIS A 213 1 6 HELIX 11 11 HIS A 213 GLU A 221 1 9 HELIX 12 12 PHE A 224 ALA A 231 5 8 HELIX 13 13 LEU A 265 GLY A 285 1 21 HELIX 14 14 GLY A 285 ARG A 293 1 9 HELIX 15 15 PRO A 337 GLY A 353 1 17 HELIX 16 16 GLY A 356 ASN A 372 1 17 HELIX 17 17 GLY A 373 LYS A 375 5 3 HELIX 18 18 GLU A 410 SER A 425 1 16 HELIX 19 19 ASN A 428 SER A 436 1 9 HELIX 20 20 THR A 438 LYS A 445 1 8 HELIX 21 21 SER B 11 ASN B 23 1 13 HELIX 22 22 ASP B 26 ILE B 46 1 21 HELIX 23 23 ALA B 48 CYS B 56 1 9 HELIX 24 24 ASN B 90 ASP B 103 1 14 HELIX 25 25 ASN B 106 SER B 110 5 5 HELIX 26 26 GLU B 166 GLY B 168 5 3 SHEET 1 A 2 SER A 15 LYS A 17 0 SHEET 2 A 2 ASP A 382 LEU A 384 -1 O LEU A 383 N GLN A 16 SHEET 1 B 3 LEU A 40 HIS A 44 0 SHEET 2 B 3 PHE A 147 CYS A 151 -1 O ILE A 148 N LEU A 42 SHEET 3 B 3 ARG A 140 PHE A 144 -1 N PHE A 144 O PHE A 147 SHEET 1 C 4 ILE A 74 LEU A 78 0 SHEET 2 C 4 ASP A 62 ARG A 68 -1 N ILE A 65 O PHE A 77 SHEET 3 C 4 ASP A 53 MET A 59 -1 N ALA A 57 O VAL A 64 SHEET 4 C 4 ALA A 93 ASN A 95 -1 O GLY A 94 N TYR A 54 SHEET 1 D 3 GLY A 98 VAL A 100 0 SHEET 2 D 3 GLY A 107 GLY A 109 -1 O PHE A 108 N PHE A 99 SHEET 3 D 3 LEU A 114 SER A 116 -1 O SER A 116 N GLY A 107 SHEET 1 E 9 LEU A 180 ILE A 191 0 SHEET 2 E 9 THR A 323 GLU A 333 -1 O VAL A 326 N VAL A 189 SHEET 3 E 9 VAL A 312 ASP A 320 -1 N PHE A 313 O TYR A 329 SHEET 4 E 9 ASN A 304 LEU A 307 -1 N SER A 305 O LYS A 314 SHEET 5 E 9 HIS A 295 VAL A 300 -1 N VAL A 300 O ASN A 304 SHEET 6 E 9 GLY A 249 LEU A 253 -1 N LEU A 253 O HIS A 295 SHEET 7 E 9 GLY A 239 THR A 243 -1 N LEU A 240 O VAL A 252 SHEET 8 E 9 VAL A 402 GLY A 404 -1 O GLY A 404 N GLN A 241 SHEET 9 E 9 VAL A 393 TYR A 394 -1 N VAL A 393 O VAL A 403 SHEET 1 F 6 ALA B 83 GLU B 89 0 SHEET 2 F 6 VAL B 57 ARG B 68 -1 N TYR B 63 O GLU B 89 SHEET 3 F 6 ARG B 170 ASP B 178 1 O VAL B 177 N ILE B 66 SHEET 4 F 6 GLN B 150 ARG B 164 -1 N LYS B 161 O VAL B 173 SHEET 5 F 6 LEU B 133 ARG B 146 -1 N SER B 138 O ARG B 158 SHEET 6 F 6 ARG B 114 MET B 126 -1 N ALA B 125 O HIS B 135 SSBOND 1 CYS B 24 CYS B 24 1555 11565 2.04 LINK NE2 HIS A 213 FE FE A1005 1555 1555 2.03 LINK NE2 HIS A 208 FE FE A1005 1555 1555 2.12 LINK ND1 HIS A 83 FE1 FES A1004 1555 1555 2.24 LINK ND1 HIS A 104 FE1 FES A1004 1555 1555 2.27 LINK OD1 ASP A 362 FE FE A1005 1555 1555 2.30 LINK SG CYS A 101 FE2 FES A1004 1555 1555 2.36 LINK SG CYS A 81 FE2 FES A1004 1555 1555 2.38 LINK OD2 ASP A 362 FE FE A1005 1555 1555 2.41 LINK FE FE A1005 O HOH A1409 1555 1555 1.96 CISPEP 1 GLY A 184 PRO A 185 0 -5.39 CISPEP 2 PHE A 301 PRO A 302 0 -0.10 CISPEP 3 SER B 110 PRO B 111 0 1.45 SITE 1 AC1 10 LEU A 31 PHE A 35 ALA A 36 MET A 59 SITE 2 AC1 10 GLY A 60 ILE A 61 ASP A 62 PHE A 152 SITE 3 AC1 10 TYR A 376 GLN A 377 SITE 1 AC2 9 HIS A 18 VAL A 80 CYS A 81 ARG A 82 SITE 2 AC2 9 SER A 381 ASP A 382 HOH A1567 HOH A1569 SITE 3 AC2 9 HOH A1570 SITE 1 AC3 5 LEU A 128 ASN A 129 LYS A 130 LYS A 131 SITE 2 AC3 5 HOH A1533 SITE 1 AC4 6 CYS A 81 HIS A 83 ARG A 84 CYS A 101 SITE 2 AC4 6 HIS A 104 TRP A 106 SITE 1 AC5 4 HIS A 208 HIS A 213 ASP A 362 HOH A1409 SITE 1 AC6 5 ASN A 201 ASP A 205 HIS A 295 ASN A 297 SITE 2 AC6 5 HOH A1409 SITE 1 AC7 9 PRO A 49 ALA A 50 ASP A 53 HOH A1548 SITE 2 AC7 9 HOH A1581 ARG B 77 TYR B 78 LYS B 79 SITE 3 AC7 9 LEU B 80 SITE 1 AC8 3 PRO A 118 PHE A 119 HOH A1573 SITE 1 AC9 5 LYS A 245 TRP A 439 HOH A1254 HOH A1432 SITE 2 AC9 5 HOH A1435 SITE 1 BC1 7 TYR B 87 GLN B 101 MET B 190 VAL B 191 SITE 2 BC1 7 PHE B 192 HOH B1193 HOH B1194 SITE 1 BC2 4 HOH A1378 ASN B 90 GLN B 93 HOH B1130 SITE 1 BC3 7 ARG B 137 ALA B 157 GLU B 159 PHE B 176 SITE 2 BC3 7 VAL B 177 ASP B 178 HOH B1273 SITE 1 BC4 6 GLN B 62 GLN B 64 HOH B1148 HOH B1149 SITE 2 BC4 6 HOH B1219 HOH B1220 SITE 1 BC5 6 GLY B 58 SER B 59 GLY B 165 GLU B 166 SITE 2 BC5 6 LYS B 171 HOH B1223 SITE 1 BC6 3 GLU B 82 ALA B 83 ASN B 85 CRYST1 140.097 140.097 208.222 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007138 0.004121 0.000000 0.00000 SCALE2 0.000000 0.008242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004803 0.00000