HEADER RNA BINDING PROTEIN/RNA 22-OCT-12 4HOS TITLE CRYSTAL STRUCTURE OF FULL-LENGTH HUMAN IFIT5 WITH 5`-TRIPHOSPHATE TITLE 2 OLIGOURIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS COMPND 3 5; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: IFIT-5, INTERFERON-INDUCED 58 KDA PROTEIN, RETINOIC ACID- COMPND 6 AND INTERFERON-INDUCIBLE 58 KDA PROTEIN, P58; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(*(UTP)P*UP*UP*U)-3'); COMPND 10 CHAIN: X; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 5`-TRIPHOSPHATE OLIGOURIDINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFIT5, IFIT5/ISG58, ISG58, RI58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: T7 IN VITRO TRANSCRIPTION KEYWDS TPR, RNA BINDING; ANTIVIRAL, RNA, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.M.ABBAS,A.PICHLMAIR,M.W.GORNA,G.SUPERTI-FURGA,B.NAGAR REVDAT 4 28-FEB-24 4HOS 1 REMARK LINK REVDAT 3 27-FEB-13 4HOS 1 JRNL REVDAT 2 06-FEB-13 4HOS 1 JRNL REVDAT 1 23-JAN-13 4HOS 0 JRNL AUTH Y.M.ABBAS,A.PICHLMAIR,M.W.GORNA,G.SUPERTI-FURGA,B.NAGAR JRNL TITL STRUCTURAL BASIS FOR VIRAL 5'-PPP-RNA RECOGNITION BY HUMAN JRNL TITL 2 IFIT PROTEINS. JRNL REF NATURE V. 494 60 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23334420 JRNL DOI 10.1038/NATURE11783 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7976 - 5.4066 1.00 1720 138 0.1410 0.1547 REMARK 3 2 5.4066 - 4.2948 1.00 1694 144 0.1454 0.1587 REMARK 3 3 4.2948 - 3.7529 1.00 1659 154 0.1466 0.1545 REMARK 3 4 3.7529 - 3.4102 1.00 1673 131 0.1677 0.1670 REMARK 3 5 3.4102 - 3.1660 1.00 1668 155 0.1850 0.2259 REMARK 3 6 3.1660 - 2.9795 1.00 1651 160 0.1960 0.2537 REMARK 3 7 2.9795 - 2.8303 1.00 1686 121 0.1987 0.2234 REMARK 3 8 2.8303 - 2.7072 1.00 1681 130 0.1884 0.2158 REMARK 3 9 2.7072 - 2.6030 1.00 1657 145 0.1880 0.2377 REMARK 3 10 2.6030 - 2.5133 1.00 1643 146 0.1853 0.2537 REMARK 3 11 2.5133 - 2.4347 1.00 1676 130 0.1830 0.2181 REMARK 3 12 2.4347 - 2.3651 1.00 1651 142 0.1846 0.2305 REMARK 3 13 2.3651 - 2.3029 1.00 1665 166 0.1918 0.2515 REMARK 3 14 2.3029 - 2.2467 1.00 1638 145 0.1862 0.2516 REMARK 3 15 2.2467 - 2.1956 1.00 1666 146 0.1984 0.2646 REMARK 3 16 2.1956 - 2.1489 1.00 1659 135 0.1912 0.2413 REMARK 3 17 2.1489 - 2.1060 1.00 1652 138 0.1978 0.2800 REMARK 3 18 2.1060 - 2.0662 1.00 1681 149 0.2097 0.2612 REMARK 3 19 2.0662 - 2.0293 1.00 1628 139 0.2264 0.3279 REMARK 3 20 2.0293 - 1.9949 0.94 1582 132 0.2238 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4105 REMARK 3 ANGLE : 0.951 5542 REMARK 3 CHIRALITY : 0.070 598 REMARK 3 PLANARITY : 0.004 695 REMARK 3 DIHEDRAL : 14.778 1569 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1127 -22.1276 12.2909 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.2026 REMARK 3 T33: 0.1601 T12: 0.0444 REMARK 3 T13: -0.0165 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.4974 L22: 2.1594 REMARK 3 L33: 2.5395 L12: 0.2368 REMARK 3 L13: 0.1897 L23: 0.0199 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: 0.2709 S13: -0.0482 REMARK 3 S21: -0.2650 S22: -0.0227 S23: -0.0495 REMARK 3 S31: 0.2822 S32: 0.1555 S33: 0.0382 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9072 -25.5277 2.7175 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.3315 REMARK 3 T33: 0.2299 T12: -0.0169 REMARK 3 T13: -0.0693 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 2.6416 L22: 3.0050 REMARK 3 L33: 3.8545 L12: -0.4236 REMARK 3 L13: 1.2311 L23: -0.7893 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: 0.5136 S13: -0.2787 REMARK 3 S21: -0.5266 S22: 0.0753 S23: 0.2400 REMARK 3 S31: 0.5033 S32: -0.1892 S33: -0.1317 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8429 -6.1526 16.4492 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.1824 REMARK 3 T33: 0.1574 T12: 0.0062 REMARK 3 T13: -0.0104 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.8214 L22: 2.7263 REMARK 3 L33: 2.9419 L12: -1.0695 REMARK 3 L13: -0.7943 L23: -0.0789 REMARK 3 S TENSOR REMARK 3 S11: 0.1276 S12: 0.3452 S13: 0.2068 REMARK 3 S21: -0.3497 S22: -0.0761 S23: 0.1034 REMARK 3 S31: -0.2389 S32: -0.0919 S33: -0.0441 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4126 -8.8691 39.8187 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.1727 REMARK 3 T33: 0.1738 T12: -0.0379 REMARK 3 T13: 0.0260 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.2249 L22: 1.3912 REMARK 3 L33: 1.6040 L12: -0.0948 REMARK 3 L13: -0.0367 L23: 0.0655 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.3676 S13: 0.0755 REMARK 3 S21: 0.3065 S22: -0.0672 S23: 0.1204 REMARK 3 S31: -0.0479 S32: -0.0431 S33: 0.0468 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 482 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5289 4.4667 33.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.2212 REMARK 3 T33: 0.2169 T12: 0.0021 REMARK 3 T13: -0.0178 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.4728 L22: 2.3369 REMARK 3 L33: 0.1819 L12: 1.2361 REMARK 3 L13: -0.2084 L23: -0.1625 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.0450 S13: -0.0520 REMARK 3 S21: 0.0741 S22: -0.0795 S23: -0.0960 REMARK 3 S31: -0.0367 S32: 0.0157 S33: -0.0083 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 2 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8440 -6.5635 34.1919 REMARK 3 T TENSOR REMARK 3 T11: 0.3080 T22: 0.2829 REMARK 3 T33: 0.3737 T12: -0.0718 REMARK 3 T13: -0.0421 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.1014 L22: 2.2887 REMARK 3 L33: 2.7668 L12: -1.5867 REMARK 3 L13: -1.7320 L23: 2.5060 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: 0.0637 S13: 0.7534 REMARK 3 S21: 0.5042 S22: 0.1907 S23: -0.6707 REMARK 3 S31: -0.6190 S32: 0.8218 S33: 0.0390 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36176 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.46950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U X 4 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U X 4 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U X 4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 40 O HOH A 949 2.08 REMARK 500 O HOH A 920 O HOH A 921 2.13 REMARK 500 OD2 ASP A 373 O HOH A 755 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 196 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 4 -14.47 85.81 REMARK 500 GLN A 66 68.05 -107.76 REMARK 500 GLN A 109 73.94 -101.49 REMARK 500 ASP A 191 52.73 39.61 REMARK 500 VAL A 196 127.74 -19.51 REMARK 500 ASN A 306 13.70 59.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE2 REMARK 620 2 HOH A 612 O 83.5 REMARK 620 3 HOH A 613 O 73.6 119.9 REMARK 620 4 HOH A 655 O 99.3 73.5 57.4 REMARK 620 5 UTP X 1 O1A 169.0 87.2 116.3 83.4 REMARK 620 6 UTP X 1 O2G 91.5 87.9 145.6 157.1 82.4 REMARK 620 7 HOH X 101 O 97.3 172.7 67.1 113.4 91.2 84.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HOQ RELATED DB: PDB REMARK 900 RELATED ID: 4HOR RELATED DB: PDB REMARK 900 RELATED ID: 4HOT RELATED DB: PDB REMARK 900 RELATED ID: 4HOU RELATED DB: PDB DBREF 4HOS A 1 482 UNP Q13325 IFIT5_HUMAN 1 482 DBREF 4HOS X 1 4 PDB 4HOS 4HOS 1 4 SEQRES 1 A 482 MET SER GLU ILE ARG LYS ASP THR LEU LYS ALA ILE LEU SEQRES 2 A 482 LEU GLU LEU GLU CYS HIS PHE THR TRP ASN LEU LEU LYS SEQRES 3 A 482 GLU ASP ILE ASP LEU PHE GLU VAL GLU ASP THR ILE GLY SEQRES 4 A 482 GLN GLN LEU GLU PHE LEU THR THR LYS SER ARG LEU ALA SEQRES 5 A 482 LEU TYR ASN LEU LEU ALA TYR VAL LYS HIS LEU LYS GLY SEQRES 6 A 482 GLN ASN LYS ASP ALA LEU GLU CYS LEU GLU GLN ALA GLU SEQRES 7 A 482 GLU ILE ILE GLN GLN GLU HIS SER ASP LYS GLU GLU VAL SEQRES 8 A 482 ARG SER LEU VAL THR TRP GLY ASN TYR ALA TRP VAL TYR SEQRES 9 A 482 TYR HIS MET ASP GLN LEU GLU GLU ALA GLN LYS TYR THR SEQRES 10 A 482 GLY LYS ILE GLY ASN VAL CYS LYS LYS LEU SER SER PRO SEQRES 11 A 482 SER ASN TYR LYS LEU GLU CYS PRO GLU THR ASP CYS GLU SEQRES 12 A 482 LYS GLY TRP ALA LEU LEU LYS PHE GLY GLY LYS TYR TYR SEQRES 13 A 482 GLN LYS ALA LYS ALA ALA PHE GLU LYS ALA LEU GLU VAL SEQRES 14 A 482 GLU PRO ASP ASN PRO GLU PHE ASN ILE GLY TYR ALA ILE SEQRES 15 A 482 THR VAL TYR ARG LEU ASP ASP SER ASP ARG GLU GLY SER SEQRES 16 A 482 VAL LYS SER PHE SER LEU GLY PRO LEU ARG LYS ALA VAL SEQRES 17 A 482 THR LEU ASN PRO ASP ASN SER TYR ILE LYS VAL PHE LEU SEQRES 18 A 482 ALA LEU LYS LEU GLN ASP VAL HIS ALA GLU ALA GLU GLY SEQRES 19 A 482 GLU LYS TYR ILE GLU GLU ILE LEU ASP GLN ILE SER SER SEQRES 20 A 482 GLN PRO TYR VAL LEU ARG TYR ALA ALA LYS PHE TYR ARG SEQRES 21 A 482 ARG LYS ASN SER TRP ASN LYS ALA LEU GLU LEU LEU LYS SEQRES 22 A 482 LYS ALA LEU GLU VAL THR PRO THR SER SER PHE LEU HIS SEQRES 23 A 482 HIS GLN MET GLY LEU CYS TYR ARG ALA GLN MET ILE GLN SEQRES 24 A 482 ILE LYS LYS ALA THR HIS ASN ARG PRO LYS GLY LYS ASP SEQRES 25 A 482 LYS LEU LYS VAL ASP GLU LEU ILE SER SER ALA ILE PHE SEQRES 26 A 482 HIS PHE LYS ALA ALA MET GLU ARG ASP SER MET PHE ALA SEQRES 27 A 482 PHE ALA TYR THR ASP LEU ALA ASN MET TYR ALA GLU GLY SEQRES 28 A 482 GLY GLN TYR SER ASN ALA GLU ASP ILE PHE ARG LYS ALA SEQRES 29 A 482 LEU ARG LEU GLU ASN ILE THR ASP ASP HIS LYS HIS GLN SEQRES 30 A 482 ILE HIS TYR HIS TYR GLY ARG PHE GLN GLU PHE HIS ARG SEQRES 31 A 482 LYS SER GLU ASN THR ALA ILE HIS HIS TYR LEU GLU ALA SEQRES 32 A 482 LEU LYS VAL LYS ASP ARG SER PRO LEU ARG THR LYS LEU SEQRES 33 A 482 THR SER ALA LEU LYS LYS LEU SER THR LYS ARG LEU CYS SEQRES 34 A 482 HIS ASN ALA LEU ASP VAL GLN SER LEU SER ALA LEU GLY SEQRES 35 A 482 PHE VAL TYR LYS LEU GLU GLY GLU LYS ARG GLN ALA ALA SEQRES 36 A 482 GLU TYR TYR GLU LYS ALA GLN LYS ILE ASP PRO GLU ASN SEQRES 37 A 482 ALA GLU PHE LEU THR ALA LEU CYS GLU LEU ARG LEU SER SEQRES 38 A 482 ILE SEQRES 1 X 4 UTP U U U HET UTP X 1 29 HET NA A 501 1 HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 UTP C9 H15 N2 O15 P3 FORMUL 3 NA NA 1+ FORMUL 4 HOH *364(H2 O) HELIX 1 1 ARG A 5 LEU A 16 1 12 HELIX 2 2 CYS A 18 TRP A 22 5 5 HELIX 3 3 LEU A 25 ILE A 29 5 5 HELIX 4 4 ASP A 30 LEU A 45 1 16 HELIX 5 5 SER A 49 LYS A 64 1 16 HELIX 6 6 GLN A 66 HIS A 85 1 20 HELIX 7 7 SER A 86 GLU A 89 5 4 HELIX 8 8 GLU A 90 ARG A 92 5 3 HELIX 9 9 SER A 93 MET A 107 1 15 HELIX 10 10 GLN A 109 LEU A 127 1 19 HELIX 11 11 CYS A 137 PHE A 151 1 15 HELIX 12 12 GLY A 152 LYS A 154 5 3 HELIX 13 13 TYR A 155 GLU A 170 1 16 HELIX 14 14 ASN A 173 SER A 190 1 18 HELIX 15 15 SER A 200 ASN A 211 1 12 HELIX 16 16 ASN A 214 VAL A 228 1 15 HELIX 17 17 ALA A 230 ILE A 245 1 16 HELIX 18 18 GLN A 248 LYS A 262 1 15 HELIX 19 19 SER A 264 THR A 279 1 16 HELIX 20 20 SER A 282 THR A 304 1 23 HELIX 21 21 LYS A 309 ASP A 334 1 26 HELIX 22 22 PHE A 337 GLY A 351 1 15 HELIX 23 23 GLN A 353 ARG A 366 1 14 HELIX 24 24 THR A 371 HIS A 389 1 19 HELIX 25 25 SER A 392 LYS A 407 1 16 HELIX 26 26 LEU A 412 ASN A 431 1 20 HELIX 27 27 ASP A 434 GLU A 448 1 15 HELIX 28 28 GLU A 450 ASP A 465 1 16 HELIX 29 29 ASN A 468 SER A 481 1 14 LINK OE2 GLU A 33 NA NA A 501 1555 1555 2.37 LINK NA NA A 501 O HOH A 612 1555 1555 2.43 LINK NA NA A 501 O HOH A 613 1555 1555 2.79 LINK NA NA A 501 O HOH A 655 1555 1555 2.48 LINK NA NA A 501 O1A UTP X 1 1555 1555 2.30 LINK NA NA A 501 O2G UTP X 1 1555 1555 2.32 LINK NA NA A 501 O HOH X 101 1555 1555 2.32 SITE 1 AC1 6 GLU A 33 HOH A 612 HOH A 613 HOH A 655 SITE 2 AC1 6 UTP X 1 HOH X 101 CRYST1 54.475 84.939 60.928 90.00 106.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018357 0.000000 0.005525 0.00000 SCALE2 0.000000 0.011773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017140 0.00000