data_4HP7 # _entry.id 4HP7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HP7 pdb_00004hp7 10.2210/pdb4hp7/pdb NDB NA2103 ? ? RCSB RCSB075746 ? ? WWPDB D_1000075746 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-23 2 'Structure model' 1 1 2022-03-23 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Data collection' 6 4 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' database_2 3 2 'Structure model' pdbx_struct_assembly 4 2 'Structure model' pdbx_struct_oper_list 5 2 'Structure model' software 6 2 'Structure model' struct_conn 7 3 'Structure model' chem_comp_atom 8 3 'Structure model' chem_comp_bond 9 4 'Structure model' entity 10 4 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.type' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_entity.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HP7 _pdbx_database_status.recvd_initial_deposition_date 2012-10-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3C2J _pdbx_database_related.details 'Crystal structure analysis of trioxacarcin A covalently bound to GUANINE excised from d(AACCGGTT)' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smaltz, D.J.' 1 'Magauer, T.' 2 'Proepper, K.' 3 'Dittrich, B.' 4 'Myers, A.G.' 5 # _citation.id primary _citation.title 'Trioxacarcin D517' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smaltz, D.J.' 1 ? primary 'Magauer, T.' 2 ? primary 'Proepper, K.' 3 ? primary 'Dittrich, B.' 4 ? primary 'Myers, A.G.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 non-polymer syn 'Trioxacarcin A analogue, bound form' 660.662 4 ? ? ? 'synthetic source form the laboratory of Andrew G. Myers' 2 non-polymer syn GUANINE 151.126 4 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 3 ? ? ? ? 4 water nat water 18.015 7 ? ? ? ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 1 'Trioxacarcin A analogue, bound form' 18Y 2 GUANINE GUN 3 'DIMETHYL SULFOXIDE' DMS 4 water HOH # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 18Y non-polymer . 'Trioxacarcin A analogue, bound form' ;(1S,2R,3aS,4S,13aS)-2-(dimethoxymethyl)-1,12-dihydroxy-7-methoxy-1,5-dimethyl-11-oxo-1,2,3a,4,8,9,10,11-octahydro-13aH-2,4-epoxyfuro[3,2-b]naphtho[2,3-h]chromen-13a-yl 4-C-acetyl-2,6-dideoxy-alpha-L-xylo-hexopyranoside ; 'C33 H40 O14' 660.662 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code A 1 18Y 1 101 102 18Y 18Y A . B 2 GUN 1 102 101 GUN GUN A . C 1 18Y 1 101 103 18Y 18Y B . D 2 GUN 1 102 101 GUN GUN B . E 1 18Y 1 101 104 18Y 18Y C . F 2 GUN 1 102 101 GUN GUN C . G 1 18Y 1 101 105 18Y 18Y D . H 2 GUN 1 102 101 GUN GUN D . I 3 DMS 1 106 106 DMS DMS C . J 3 DMS 1 107 107 DMS DMS C . K 3 DMS 1 108 108 DMS DMS D . L 4 HOH 1 201 201 HOH HOH D . L 4 HOH 2 202 202 HOH HOH D . L 4 HOH 3 203 203 HOH HOH D . L 4 HOH 4 204 204 HOH HOH D . L 4 HOH 5 205 205 HOH HOH D . L 4 HOH 6 206 206 HOH HOH D . L 4 HOH 7 207 207 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 18Y 101 ? C28 ? A 18Y 1 C28 2 1 N 1 A 18Y 101 ? O16 ? A 18Y 1 O16 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL refinement 2012 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 # _cell.entry_id 4HP7 _cell.length_a 24.086 _cell.length_b 9.826 _cell.length_c 35.093 _cell.angle_alpha 90.00 _cell.angle_beta 92.32 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HP7 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4HP7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.45 _exptl_crystal.density_percent_sol 64.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details ;The solution in the reservoir contained tri-ammonium citrate (pH 7.0) and 30% v/v DMSO. The DNA-drug solution 2.5 mM DNA (single-strand concentration), 2.8mM trioxacarcin A D5, VAPOR DIFFUSION, HANGING DROP, temperature 310K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 4HP7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.000 _reflns.d_resolution_high 1.09 _reflns.number_obs ? _reflns.number_all 7037 _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs 0.0995 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.28 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.14 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.09 _reflns_shell.d_res_low 1.11 _reflns_shell.percent_possible_all 52.9 _reflns_shell.Rmerge_I_obs 0.4339 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.36 _reflns_shell.pdbx_redundancy 1.21 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4HP7 _refine.ls_number_reflns_obs 7037 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.000 _refine.ls_d_res_high 1.09 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_obs 0.1532 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2156 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 1288 _refine.ls_number_parameters 2187 _refine.ls_number_restraints 2331 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4HP7 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 3 _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen 247.0 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 242 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 249 _refine_hist.d_res_high 1.09 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id s_bond_d 0.0285 ? ? ? ? 'X-RAY DIFFRACTION' s_angle_d 0.729 ? ? ? ? 'X-RAY DIFFRACTION' s_similar_dist 0.159 ? ? ? ? 'X-RAY DIFFRACTION' s_from_restr_planes 0.4909 ? ? ? ? 'X-RAY DIFFRACTION' s_zero_chiral_vol 0.0 ? ? ? ? 'X-RAY DIFFRACTION' s_non_zero_chiral_vol 0.12 ? ? ? ? 'X-RAY DIFFRACTION' s_anti_bump_dis_restr 0.0000 ? ? ? ? 'X-RAY DIFFRACTION' s_rigid_bond_adp_cmpnt 0.0263 ? ? ? ? 'X-RAY DIFFRACTION' s_similar_adp_cmpnt 0.0000 ? ? ? ? 'X-RAY DIFFRACTION' s_approx_iso_adps 0.0000 ? ? ? ? 'X-RAY DIFFRACTION' # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4HP7 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1532 _pdbx_refine.free_R_factor_no_cutoff 0.2156 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1288 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1211 _pdbx_refine.free_R_factor_4sig_cutoff 0.1818 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 871 _pdbx_refine.number_reflns_obs_4sig_cutoff 7634 # _database_PDB_matrix.entry_id 4HP7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 4HP7 _struct.title 'Trioxacarcin D517 as a product of guanine robbery from d(AACCGGTT)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HP7 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'Aminoglycosides, Anti-Bacterial Agents, Antitumor Agents, DNA, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4HP7 _struct_ref.pdbx_db_accession 4HP7 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A 18Y . C17 ? ? ? 1_555 B GUN . N7 ? ? A 18Y 101 A GUN 102 1_555 ? ? ? ? ? ? ? 1.518 ? ? covale2 covale none ? C 18Y . C17 ? ? ? 1_555 D GUN . N7 ? ? B 18Y 101 B GUN 102 1_555 ? ? ? ? ? ? ? 1.457 ? ? covale3 covale none ? E 18Y . C17 ? ? ? 1_555 F GUN . N7 ? ? C 18Y 101 C GUN 102 1_555 ? ? ? ? ? ? ? 1.462 ? ? covale4 covale none ? G 18Y . C17 ? ? ? 1_555 H GUN . N7 ? ? D 18Y 101 D GUN 102 1_555 ? ? ? ? ? ? ? 1.436 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 18Y C3 C N N 1 18Y C5 C Y N 2 18Y O1 O N N 3 18Y "C7'" C N N 4 18Y "O7'" O N N 5 18Y "C8'" C N N 6 18Y C1 C N N 7 18Y C2 C N N 8 18Y C4 C N N 9 18Y C6 C Y N 10 18Y C7 C Y N 11 18Y O8 O N N 12 18Y C8 C Y N 13 18Y O9 O N N 14 18Y C9 C Y N 15 18Y O10 O N N 16 18Y C19 C Y N 17 18Y O11 O N N 18 18Y C11 C N S 19 18Y O12 O N N 20 18Y C12 C N S 21 18Y O13 O N N 22 18Y C13 C N S 23 18Y O14 O N N 24 18Y C14 C N S 25 18Y C15 C N R 26 18Y C25 C N N 27 18Y "O1'" O N N 28 18Y "C1'" C N S 29 18Y "C2'" C N N 30 18Y "O3'" O N N 31 18Y "C3'" C N R 32 18Y "O4'" O N N 33 18Y "C4'" C N S 34 18Y "C5'" C N S 35 18Y "C6'" C N N 36 18Y C20 C Y N 37 18Y C21 C Y N 38 18Y C18 C N N 39 18Y C22 C Y N 40 18Y C23 C Y N 41 18Y C24 C N N 42 18Y O26 O N N 43 18Y C27 C N N 44 18Y C28 C N N 45 18Y C17 C N N 46 18Y O16 O N N 47 18Y H3A H N N 48 18Y H3B H N N 49 18Y H5 H N N 50 18Y "H81'" H N N 51 18Y "H82'" H N N 52 18Y "H83'" H N N 53 18Y H2B H N N 54 18Y H2A H N N 55 18Y H4A H N N 56 18Y H4B H N N 57 18Y H9 H N N 58 18Y H11 H N N 59 18Y H12 H N N 60 18Y H1 H N N 61 18Y H16 H N N 62 18Y "H1'" H N N 63 18Y "H2'" H N N 64 18Y H2 H N N 65 18Y HO3 H N N 66 18Y "H3'" H N N 67 18Y "H4'" H N N 68 18Y "H5'" H N N 69 18Y "H61'" H N N 70 18Y "H62'" H N N 71 18Y "H63'" H N N 72 18Y H61A H N N 73 18Y H63A H N N 74 18Y H62A H N N 75 18Y H111 H N N 76 18Y H112 H N N 77 18Y H113 H N N 78 18Y H62B H N N 79 18Y H63B H N N 80 18Y H61B H N N 81 18Y H63C H N N 82 18Y H61C H N N 83 18Y H62C H N N 84 18Y H171 H N N 85 18Y H172 H N N 86 18Y H3 H N N 87 DMS S S N N 88 DMS O O N N 89 DMS C1 C N N 90 DMS C2 C N N 91 DMS H11 H N N 92 DMS H12 H N N 93 DMS H13 H N N 94 DMS H21 H N N 95 DMS H22 H N N 96 DMS H23 H N N 97 GUN N9 N Y N 98 GUN C8 C Y N 99 GUN N7 N Y N 100 GUN C5 C Y N 101 GUN C6 C N N 102 GUN O6 O N N 103 GUN N1 N N N 104 GUN C2 C N N 105 GUN N2 N N N 106 GUN N3 N N N 107 GUN C4 C Y N 108 GUN HN9 H N N 109 GUN H8 H N N 110 GUN HN1 H N N 111 GUN HN21 H N N 112 GUN HN22 H N N 113 HOH O O N N 114 HOH H1 H N N 115 HOH H2 H N N 116 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 18Y C3 C4 sing N N 1 18Y C3 C2 sing N N 2 18Y C4 C21 sing N N 3 18Y C2 C1 sing N N 4 18Y O10 C19 sing N N 5 18Y O10 C24 sing N N 6 18Y C21 C19 doub Y N 7 18Y C21 C20 sing Y N 8 18Y C19 C23 sing Y N 9 18Y C1 C20 sing N N 10 18Y C1 O1 doub N N 11 18Y C20 C9 doub Y N 12 18Y C23 C5 doub Y N 13 18Y C23 C22 sing Y N 14 18Y C5 C6 sing Y N 15 18Y C9 C22 sing Y N 16 18Y C9 O9 sing N N 17 18Y "C6'" "C5'" sing N N 18 18Y C22 C8 doub Y N 19 18Y "O4'" "C4'" sing N N 20 18Y C6 C18 sing N N 21 18Y C6 C7 doub Y N 22 18Y "O1'" "C5'" sing N N 23 18Y "O1'" "C1'" sing N N 24 18Y C8 C7 sing Y N 25 18Y C8 O8 sing N N 26 18Y "C5'" "C4'" sing N N 27 18Y C7 C11 sing N N 28 18Y "C4'" "C7'" sing N N 29 18Y "C4'" "C3'" sing N N 30 18Y "C1'" "C2'" sing N N 31 18Y "C1'" O13 sing N N 32 18Y O8 C13 sing N N 33 18Y "C8'" "C7'" sing N N 34 18Y C11 C12 sing N N 35 18Y C11 O11 sing N N 36 18Y "C2'" "C3'" sing N N 37 18Y "C7'" "O7'" doub N N 38 18Y C12 C13 sing N N 39 18Y C12 O12 sing N N 40 18Y "C3'" "O3'" sing N N 41 18Y C13 O13 sing N N 42 18Y C13 C14 sing N N 43 18Y O12 C15 sing N N 44 18Y O11 C15 sing N N 45 18Y C14 C15 sing N N 46 18Y C14 C17 sing N N 47 18Y C14 O14 sing N N 48 18Y C15 C25 sing N N 49 18Y C25 O16 sing N N 50 18Y C25 O26 sing N N 51 18Y C28 O16 sing N N 52 18Y O26 C27 sing N N 53 18Y C3 H3A sing N N 54 18Y C3 H3B sing N N 55 18Y C5 H5 sing N N 56 18Y "C8'" "H81'" sing N N 57 18Y "C8'" "H82'" sing N N 58 18Y "C8'" "H83'" sing N N 59 18Y C2 H2B sing N N 60 18Y C2 H2A sing N N 61 18Y C4 H4A sing N N 62 18Y C4 H4B sing N N 63 18Y O9 H9 sing N N 64 18Y C11 H11 sing N N 65 18Y C12 H12 sing N N 66 18Y O14 H1 sing N N 67 18Y C25 H16 sing N N 68 18Y "C1'" "H1'" sing N N 69 18Y "C2'" "H2'" sing N N 70 18Y "C2'" H2 sing N N 71 18Y "O3'" HO3 sing N N 72 18Y "C3'" "H3'" sing N N 73 18Y "O4'" "H4'" sing N N 74 18Y "C5'" "H5'" sing N N 75 18Y "C6'" "H61'" sing N N 76 18Y "C6'" "H62'" sing N N 77 18Y "C6'" "H63'" sing N N 78 18Y C18 H61A sing N N 79 18Y C18 H63A sing N N 80 18Y C18 H62A sing N N 81 18Y C24 H111 sing N N 82 18Y C24 H112 sing N N 83 18Y C24 H113 sing N N 84 18Y C27 H62B sing N N 85 18Y C27 H63B sing N N 86 18Y C27 H61B sing N N 87 18Y C28 H63C sing N N 88 18Y C28 H61C sing N N 89 18Y C28 H62C sing N N 90 18Y C17 H171 sing N N 91 18Y C17 H172 sing N N 92 18Y C17 H3 sing N N 93 DMS S O doub N N 94 DMS S C1 sing N N 95 DMS S C2 sing N N 96 DMS C1 H11 sing N N 97 DMS C1 H12 sing N N 98 DMS C1 H13 sing N N 99 DMS C2 H21 sing N N 100 DMS C2 H22 sing N N 101 DMS C2 H23 sing N N 102 GUN N9 C8 sing Y N 103 GUN N9 C4 sing Y N 104 GUN N9 HN9 sing N N 105 GUN C8 N7 doub Y N 106 GUN C8 H8 sing N N 107 GUN N7 C5 sing Y N 108 GUN C5 C6 sing N N 109 GUN C5 C4 doub Y N 110 GUN C6 O6 doub N N 111 GUN C6 N1 sing N N 112 GUN N1 C2 sing N N 113 GUN N1 HN1 sing N N 114 GUN C2 N2 sing N N 115 GUN C2 N3 doub N N 116 GUN N2 HN21 sing N N 117 GUN N2 HN22 sing N N 118 GUN N3 C4 sing N N 119 HOH O H1 sing N N 120 HOH O H2 sing N N 121 # _atom_sites.entry_id 4HP7 _atom_sites.fract_transf_matrix[1][1] 0.041517 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001678 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.101771 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028519 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_