HEADER PROTEIN BINDING 24-OCT-12 4HPK TITLE CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLG COLLAGENASE TITLE 2 COLLAGEN-BINDING DOMAIN 3B AT 1.35 ANGSTROM RESOLUTION IN PRESENCE OF TITLE 3 CALCIUM NITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1006-1118; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COLLAGENASE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 999-1118; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM HISTOLYTICUM; SOURCE 3 ORGANISM_TAXID: 1498; SOURCE 4 GENE: COLG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CLOSTRIDIUM HISTOLYTICUM; SOURCE 9 ORGANISM_TAXID: 1498; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-SANDWICH JELLY-ROLL, COLLAGEN BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.T.L.PHILOMINATHAN,J.J.WILSON,R.BAUER,O.MATSUSHITA,J.SAKON REVDAT 5 28-FEB-24 4HPK 1 REMARK SEQADV LINK REVDAT 4 16-JAN-13 4HPK 1 JRNL REVDAT 3 02-JAN-13 4HPK 1 JRNL REVDAT 2 19-DEC-12 4HPK 1 REMARK REVDAT 1 12-DEC-12 4HPK 0 JRNL AUTH R.BAUER,J.J.WILSON,S.T.PHILOMINATHAN,D.DAVIS,O.MATSUSHITA, JRNL AUTH 2 J.SAKON JRNL TITL STRUCTURAL COMPARISON OF COLH AND COLG COLLAGEN-BINDING JRNL TITL 2 DOMAINS FROM CLOSTRIDIUM HISTOLYTICUM. JRNL REF J.BACTERIOL. V. 195 318 2013 JRNL REFN ISSN 0021-9193 JRNL PMID 23144249 JRNL DOI 10.1128/JB.00010-12 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1881 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1292 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2524 ; 1.222 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3174 ; 1.711 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 5.886 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;33.115 ;25.816 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;11.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 6.743 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 267 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2072 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 288 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1243 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 869 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1040 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.048 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.298 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.087 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1172 ; 1.337 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 462 ; 0.622 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1805 ; 1.946 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 829 ; 2.566 ; 3.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 3.115 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1993 ; 2.148 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 3 ; 8.741 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1833 ; 2.489 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98045 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 16.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 3.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-27% PEG 3350, 100MM SODIUM ACETATE, REMARK 280 600MM LICL, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.58500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 963 REMARK 465 ILE A 964 REMARK 465 ASN A 965 REMARK 465 ASN B 963 REMARK 465 ILE B 964 REMARK 465 ASN B 965 REMARK 465 ASP B 966 REMARK 465 ARG B 967 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 966 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 919 CA - CB - CG ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 899 OE2 REMARK 620 2 GLU A 899 OE1 52.9 REMARK 620 3 GLU A 901 OE2 115.1 77.5 REMARK 620 4 SER A 922 O 85.2 127.5 155.1 REMARK 620 5 ASP A 927 OD2 149.2 154.4 78.6 76.7 REMARK 620 6 ASP A 930 OD1 121.8 76.6 73.1 109.6 88.0 REMARK 620 7 ASP A 930 OD2 83.7 71.2 120.1 74.3 114.2 50.9 REMARK 620 8 HOH A1205 O 73.0 105.5 85.3 87.3 81.4 157.5 151.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 901 OE2 REMARK 620 2 GLU A 901 OE1 51.5 REMARK 620 3 ASN A 903 OD1 83.8 74.8 REMARK 620 4 ASP A 904 OD2 132.5 82.3 95.4 REMARK 620 5 ASP A 927 OD1 82.5 96.9 166.3 94.3 REMARK 620 6 ARG A 929 O 148.8 159.2 98.9 78.5 92.6 REMARK 620 7 ASP A 930 OD1 73.7 122.1 83.4 153.7 92.2 75.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 899 OE1 REMARK 620 2 GLU B 899 OE2 52.4 REMARK 620 3 GLU B 901 OE2 113.4 76.6 REMARK 620 4 SER B 922 O 86.1 128.6 154.8 REMARK 620 5 ASP B 927 OD2 148.7 154.6 79.4 75.9 REMARK 620 6 ASP B 930 OD1 123.2 77.9 72.7 110.9 87.5 REMARK 620 7 ASP B 930 OD2 84.3 71.1 119.4 76.7 115.3 51.4 REMARK 620 8 HOH B1204 O 76.4 105.9 81.0 88.8 77.7 151.9 156.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 901 OE2 REMARK 620 2 GLU B 901 OE1 52.4 REMARK 620 3 ASN B 903 OD1 85.3 73.5 REMARK 620 4 ASP B 904 OD2 133.3 82.6 93.9 REMARK 620 5 ASP B 927 OD1 82.9 99.3 168.2 94.4 REMARK 620 6 ARG B 929 O 149.5 157.3 98.1 76.9 91.9 REMARK 620 7 ASP B 930 OD1 73.5 122.0 83.9 152.9 92.5 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O8O RELATED DB: PDB REMARK 900 SAME PROTEIN REFINED USING SHELX97 REMARK 900 RELATED ID: 1NQD RELATED DB: PDB REMARK 900 A BACTERIAL COLLAGEN-BINDING DOMAIN WITH NOVEL CALCIUM-BINDING MOTIF REMARK 900 RELATED ID: 1NQJ RELATED DB: PDB REMARK 900 SAME PROTEIN IN THE ABSENCE OF CALCIUM REMARK 900 RELATED ID: 3JQW RELATED DB: PDB REMARK 900 COLH COLLAGENASE COLLAGEN BINDING DOMAIN 3 IN THE PRESENCE OF REMARK 900 CALCIUM REMARK 900 RELATED ID: 3JQX RELATED DB: PDB REMARK 900 COLH COLLAGENASE COLLAGEN BINDING DOMAIN 3 IN THE PRESENCE OF REMARK 900 CALCIUM AND CADMIUM DBREF 4HPK A 896 1008 UNP Q9X721 Q9X721_CLOHI 1006 1118 DBREF 4HPK B 891 1008 UNP Q9X721 Q9X721_CLOHI 999 1118 SEQADV 4HPK PRO B 892 UNP Q9X721 LEU 1002 ENGINEERED MUTATION SEQRES 1 A 113 LYS LEU LYS GLU LYS GLU ASN ASN ASP SER SER ASP LYS SEQRES 2 A 113 ALA THR VAL ILE PRO ASN PHE ASN THR THR MET GLN GLY SEQRES 3 A 113 SER LEU LEU GLY ASP ASP SER ARG ASP TYR TYR SER PHE SEQRES 4 A 113 GLU VAL LYS GLU GLU GLY GLU VAL ASN ILE GLU LEU ASP SEQRES 5 A 113 LYS LYS ASP GLU PHE GLY VAL THR TRP THR LEU HIS PRO SEQRES 6 A 113 GLU SER ASN ILE ASN ASP ARG ILE THR TYR GLY GLN VAL SEQRES 7 A 113 ASP GLY ASN LYS VAL SER ASN LYS VAL LYS LEU ARG PRO SEQRES 8 A 113 GLY LYS TYR TYR LEU LEU VAL TYR LYS TYR SER GLY SER SEQRES 9 A 113 GLY ASN TYR GLU LEU ARG VAL ASN LYS SEQRES 1 B 118 ILE PRO GLY ASN GLU LYS LEU LYS GLU LYS GLU ASN ASN SEQRES 2 B 118 ASP SER SER ASP LYS ALA THR VAL ILE PRO ASN PHE ASN SEQRES 3 B 118 THR THR MET GLN GLY SER LEU LEU GLY ASP ASP SER ARG SEQRES 4 B 118 ASP TYR TYR SER PHE GLU VAL LYS GLU GLU GLY GLU VAL SEQRES 5 B 118 ASN ILE GLU LEU ASP LYS LYS ASP GLU PHE GLY VAL THR SEQRES 6 B 118 TRP THR LEU HIS PRO GLU SER ASN ILE ASN ASP ARG ILE SEQRES 7 B 118 THR TYR GLY GLN VAL ASP GLY ASN LYS VAL SER ASN LYS SEQRES 8 B 118 VAL LYS LEU ARG PRO GLY LYS TYR TYR LEU LEU VAL TYR SEQRES 9 B 118 LYS TYR SER GLY SER GLY ASN TYR GLU LEU ARG VAL ASN SEQRES 10 B 118 LYS HET CA A1101 1 HET CA A1102 1 HET CL A1103 1 HET NO3 A1104 4 HET CA B1101 1 HET CA B1102 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM NO3 NITRATE ION FORMUL 3 CA 4(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 NO3 N O3 1- FORMUL 9 HOH *286(H2 O) HELIX 1 1 SER A 905 ALA A 909 5 5 HELIX 2 2 SER B 905 ALA B 909 5 5 SHEET 1 A 6 LEU A 897 LYS A 898 0 SHEET 2 A 6 MET A 919 LEU A 923 1 O GLN A 920 N LEU A 897 SHEET 3 A 6 GLY A1000 ASN A1007 -1 O GLY A1000 N LEU A 923 SHEET 4 A 6 GLY A 940 LYS A 948 -1 N ASP A 947 O GLU A1003 SHEET 5 A 6 LYS A 977 LEU A 984 -1 O VAL A 982 N VAL A 942 SHEET 6 A 6 GLN A 972 ASP A 974 -1 N ASP A 974 O LYS A 977 SHEET 1 B 5 THR A 910 VAL A 911 0 SHEET 2 B 5 ARG A 929 VAL A 936 1 O TYR A 931 N THR A 910 SHEET 3 B 5 GLY A 987 SER A 997 -1 O VAL A 993 N ASP A 930 SHEET 4 B 5 GLY A 953 PRO A 960 -1 N THR A 957 O LEU A 992 SHEET 5 B 5 THR A 969 TYR A 970 -1 O THR A 969 N LEU A 958 SHEET 1 C 6 GLU B 895 LYS B 898 0 SHEET 2 C 6 THR B 917 LEU B 923 1 O THR B 918 N GLU B 895 SHEET 3 C 6 GLY B1000 ASN B1007 -1 O GLY B1000 N LEU B 923 SHEET 4 C 6 GLY B 940 LYS B 948 -1 N ASN B 943 O ASN B1007 SHEET 5 C 6 LYS B 977 LEU B 984 -1 O VAL B 978 N LEU B 946 SHEET 6 C 6 GLN B 972 ASP B 974 -1 N ASP B 974 O LYS B 977 SHEET 1 D 5 THR B 910 VAL B 911 0 SHEET 2 D 5 ARG B 929 VAL B 936 1 O TYR B 931 N THR B 910 SHEET 3 D 5 GLY B 987 SER B 997 -1 O GLY B 987 N VAL B 936 SHEET 4 D 5 GLY B 953 PRO B 960 -1 N THR B 957 O LEU B 992 SHEET 5 D 5 THR B 969 TYR B 970 -1 O THR B 969 N LEU B 958 LINK OE2 GLU A 899 CA CA A1102 1555 1555 2.42 LINK OE1 GLU A 899 CA CA A1102 1555 1555 2.50 LINK OE2 GLU A 901 CA CA A1101 1555 1555 2.42 LINK OE1 GLU A 901 CA CA A1101 1555 1555 2.59 LINK OE2 GLU A 901 CA CA A1102 1555 1555 2.36 LINK OD1 ASN A 903 CA CA A1101 1555 1555 2.38 LINK OD2 ASP A 904 CA CA A1101 1555 1555 2.36 LINK O SER A 922 CA CA A1102 1555 1555 2.36 LINK OD1 ASP A 927 CA CA A1101 1555 1555 2.41 LINK OD2 ASP A 927 CA CA A1102 1555 1555 2.37 LINK O ARG A 929 CA CA A1101 1555 1555 2.33 LINK OD1 ASP A 930 CA CA A1101 1555 1555 2.37 LINK OD1 ASP A 930 CA CA A1102 1555 1555 2.47 LINK OD2 ASP A 930 CA CA A1102 1555 1555 2.59 LINK CA CA A1102 O HOH A1205 1555 1555 2.40 LINK OE1 GLU B 899 CA CA B1102 1555 1555 2.44 LINK OE2 GLU B 899 CA CA B1102 1555 1555 2.53 LINK OE2 GLU B 901 CA CA B1101 1555 1555 2.40 LINK OE1 GLU B 901 CA CA B1101 1555 1555 2.59 LINK OE2 GLU B 901 CA CA B1102 1555 1555 2.34 LINK OD1 ASN B 903 CA CA B1101 1555 1555 2.34 LINK OD2 ASP B 904 CA CA B1101 1555 1555 2.34 LINK O SER B 922 CA CA B1102 1555 1555 2.34 LINK OD1 ASP B 927 CA CA B1101 1555 1555 2.44 LINK OD2 ASP B 927 CA CA B1102 1555 1555 2.33 LINK O ARG B 929 CA CA B1101 1555 1555 2.34 LINK OD1 ASP B 930 CA CA B1101 1555 1555 2.36 LINK OD1 ASP B 930 CA CA B1102 1555 1555 2.46 LINK OD2 ASP B 930 CA CA B1102 1555 1555 2.59 LINK CA CA B1102 O HOH B1204 1555 1555 2.43 CISPEP 1 GLU A 901 ASN A 902 0 -4.99 CISPEP 2 GLU B 901 ASN B 902 0 -4.04 SITE 1 AC1 6 GLU A 901 ASN A 903 ASP A 904 ASP A 927 SITE 2 AC1 6 ARG A 929 ASP A 930 SITE 1 AC2 6 GLU A 899 GLU A 901 SER A 922 ASP A 927 SITE 2 AC2 6 ASP A 930 HOH A1205 SITE 1 AC3 3 LYS A 937 GLU A 938 LYS A1008 SITE 1 AC4 6 LEU A 958 PRO A 960 ARG A 967 ILE A 968 SITE 2 AC4 6 THR A 969 TYR A 989 SITE 1 AC5 6 GLU B 901 ASN B 903 ASP B 904 ASP B 927 SITE 2 AC5 6 ARG B 929 ASP B 930 SITE 1 AC6 6 GLU B 899 GLU B 901 SER B 922 ASP B 927 SITE 2 AC6 6 ASP B 930 HOH B1204 CRYST1 40.866 59.170 48.800 90.00 100.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024470 0.000000 0.004655 0.00000 SCALE2 0.000000 0.016900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020859 0.00000