HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-OCT-12 4HPT TITLE CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN TITLE 2 KINASE DISPLAYING COMPLETE PHOSPHORYL TRANSFER OF AMP-PNP ONTO A TITLE 3 SUBSTRATE PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: I; COMPND 10 FRAGMENT: SP20 DERIVED FROM PKI (UNP RESIDUES 6-25); COMPND 11 SYNONYM: PKI-ALPHA, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 12 MUSCLE/BRAIN ISOFORM; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PROTEIN KINASE, PHOSPHOTRANSFERASE, REGULATORY SUBUNITS, PKI, KEYWDS 2 MAGNESIUM, PHOSPHORYLATION, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.BASTIDAS,J.M.STEICHEN,J.WU,S.S.TAYLOR REVDAT 5 27-NOV-24 4HPT 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4HPT 1 REMARK REVDAT 3 10-APR-13 4HPT 1 JRNL REVDAT 2 27-MAR-13 4HPT 1 JRNL REVDAT 1 20-MAR-13 4HPT 0 JRNL AUTH A.C.BASTIDAS,M.S.DEAL,J.M.STEICHEN,Y.GUO,J.WU,S.S.TAYLOR JRNL TITL PHOSPHORYL TRANSFER BY PROTEIN KINASE A IS CAPTURED IN A JRNL TITL 2 CRYSTAL LATTICE. JRNL REF J.AM.CHEM.SOC. V. 135 4788 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23458248 JRNL DOI 10.1021/JA312237Q REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.8 REMARK 3 NUMBER OF REFLECTIONS : 20161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1098 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3018 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4089 ; 1.155 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;35.923 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;14.545 ;15.057 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.757 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2280 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1776 ; 0.497 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2864 ; 0.936 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1242 ; 1.344 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1223 ; 2.201 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 14 E 350 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0983 -2.5511 -2.5763 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0602 REMARK 3 T33: 0.0196 T12: -0.0093 REMARK 3 T13: -0.0023 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.2947 L22: 0.6288 REMARK 3 L33: 0.9711 L12: -0.2414 REMARK 3 L13: 0.0375 L23: 0.2677 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0076 S13: 0.0208 REMARK 3 S21: -0.0103 S22: -0.0145 S23: 0.0125 REMARK 3 S31: -0.0151 S32: 0.1377 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 5 I 23 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7290 1.1935 9.2946 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0606 REMARK 3 T33: 0.0209 T12: -0.0223 REMARK 3 T13: 0.0065 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.7121 L22: 1.6413 REMARK 3 L33: 2.7390 L12: -0.9867 REMARK 3 L13: -0.5716 L23: 1.8433 REMARK 3 S TENSOR REMARK 3 S11: -0.0820 S12: -0.0896 S13: -0.0985 REMARK 3 S21: -0.0646 S22: 0.0218 S23: 0.0920 REMARK 3 S31: -0.0125 S32: -0.1422 S33: 0.0602 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 401 E 401 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5930 -10.1383 2.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: 0.1567 REMARK 3 T33: 0.0884 T12: -0.0277 REMARK 3 T13: -0.0040 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 3.8988 L22: 27.6818 REMARK 3 L33: 0.1838 L12: -10.3884 REMARK 3 L13: -0.8459 L23: 2.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.1716 S12: -0.0718 S13: 0.2778 REMARK 3 S21: 0.4920 S22: 0.2211 S23: -0.7315 REMARK 3 S31: 0.0411 S32: 0.0094 S33: -0.0495 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 402 E 402 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4696 -7.2082 0.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0781 REMARK 3 T33: 0.0585 T12: -0.0254 REMARK 3 T13: 0.0036 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 501 E 659 REMARK 3 RESIDUE RANGE : I 101 I 118 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5477 -2.2906 -1.3541 REMARK 3 T TENSOR REMARK 3 T11: 0.0410 T22: 0.0465 REMARK 3 T33: 0.0573 T12: 0.0097 REMARK 3 T13: 0.0002 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.6696 L22: 0.3291 REMARK 3 L33: 1.0758 L12: -0.3965 REMARK 3 L13: -0.1794 L23: 0.3962 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.0114 S13: -0.0020 REMARK 3 S21: 0.0056 S22: 0.0035 S23: 0.0176 REMARK 3 S31: 0.0174 S32: 0.0808 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 403 E 403 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0937 -8.5463 -3.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.1232 T22: 0.2109 REMARK 3 T33: 0.2470 T12: -0.0718 REMARK 3 T13: 0.0368 T23: 0.1783 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 50 MM BICINE, 150 MM REMARK 280 AMMONIUM ACETATE, 10 MM DTT, ~7-10 MG/ML PROTEIN WELL SOLUTION: REMARK 280 1 ML OF 2% MPD, 80 UL METHANOL ADDED TO THE WELL IMMEDIATELY REMARK 280 BEFORE SEALING 8 UL DROPS OF 1:1 PROTEIN:WELL WERE USED., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.77250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.77250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E 1 REMARK 465 ASN E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 ALA E 5 REMARK 465 ALA E 6 REMARK 465 LYS E 7 REMARK 465 LYS E 8 REMARK 465 GLY E 9 REMARK 465 SER E 10 REMARK 465 GLU E 11 REMARK 465 GLN E 12 REMARK 465 GLU E 13 REMARK 465 ASP I 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 16 CE NZ REMARK 470 LYS E 105 CD CE NZ REMARK 470 ARG E 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 285 CG CD CE NZ REMARK 470 LYS E 317 CE NZ REMARK 470 LYS E 319 CG CD CE NZ REMARK 470 GLU E 333 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 548 O HOH E 655 2.01 REMARK 500 O LYS E 213 O HOH E 643 2.07 REMARK 500 O HOH E 609 O HOH E 630 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 112 -154.85 -130.43 REMARK 500 ASP E 166 38.25 -142.90 REMARK 500 ASP E 184 81.09 67.73 REMARK 500 LEU E 273 48.56 -86.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN E 171 OD1 REMARK 620 2 ASP E 184 OD2 93.2 REMARK 620 3 ANP E 401 N3B 172.7 86.9 REMARK 620 4 ANP E 401 O2A 92.8 87.1 80.0 REMARK 620 5 HOH E 520 O 90.0 176.0 89.5 90.4 REMARK 620 6 HOH I 104 O 99.1 78.9 88.0 162.1 102.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 184 OD1 REMARK 620 2 ASP E 184 OD2 49.2 REMARK 620 3 ANP E 401 O1B 87.7 74.9 REMARK 620 4 HOH E 519 O 75.4 77.2 152.1 REMARK 620 5 SEP I 21 O1P 123.4 75.3 87.7 83.5 REMARK 620 6 HOH I 101 O 138.4 164.8 115.2 91.8 93.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF CAMP-DEPENDENT REMARK 800 PROTEIN KINASE INHIBITOR ALPHA REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ATP RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH IP20 REMARK 900 RELATED ID: 1L3R RELATED DB: PDB REMARK 900 TRANSITION STATE MIMIC OF SAME PROTEIN IN COMPLEX WITH THE SAME REMARK 900 SUBSTRATE PEPTIDE REMARK 900 RELATED ID: 4DFX RELATED DB: PDB REMARK 900 MYRISTYLATED CATALYTIC SUBUNIT WITH A K7C MUTATION IN COMPLEX WITH REMARK 900 AMP-PNP AND THE SAME SUBSTRATE PEPTIDE WITHOUT TRANSFER REMARK 900 RELATED ID: 4DG0 RELATED DB: PDB REMARK 900 MYRISTYLATED CATALYTIC SUBUNIT IN COMPLEX WITH AMP-PNP AND THE SAME REMARK 900 SUBSTRATE PEPTIDE WITHOUT TRANSFER REMARK 900 RELATED ID: 1JLU RELATED DB: PDB REMARK 900 SAME PROTEIN IN A COMPLEX WITH THE SAME SUBSTRATE PEPTIDE THAT WAS REMARK 900 PHOSPHORYLATED PRIOR TO CRYSTALLIZATION REMARK 900 RELATED ID: 1JBP RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH THE SAME SUBSTRATE PEPTIDE AND ADP REMARK 900 RELATED ID: 4DH1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME PROTEIN WITH LOW MAGNESIUM SHOWING OCCUPANCY REMARK 900 OF ONLY ONE MAGNESIUM SITE, MG2. REMARK 900 RELATED ID: 4HPU RELATED DB: PDB DBREF 4HPT E 1 350 UNP P05132 KAPCA_MOUSE 2 351 DBREF 4HPT I 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 4HPT ALA I 20 UNP P63248 ASN 21 ENGINEERED MUTATION SEQADV 4HPT SEP I 21 UNP P63248 ALA 22 ENGINEERED MUTATION SEQRES 1 E 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 E 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 E 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 E 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 E 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 E 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 E 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 E 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 E 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 E 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 E 350 HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS ALA SEQRES 12 E 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 E 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 E 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 E 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 E 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 E 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 E 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 E 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 E 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 E 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 E 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 E 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 E 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 E 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 E 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 E 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ALA SEP ILE HIS ASP MODRES 4HPT TPO E 197 THR PHOSPHOTHREONINE MODRES 4HPT SEP E 338 SER PHOSPHOSERINE MODRES 4HPT SEP I 21 SER PHOSPHOSERINE HET TPO E 197 11 HET SEP E 338 10 HET SEP I 21 10 HET ANP E 401 27 HET MG E 402 1 HET MG E 403 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *177(H2 O) HELIX 1 1 SER E 14 THR E 32 1 19 HELIX 2 2 GLN E 39 ASP E 41 5 3 HELIX 3 3 LYS E 76 LEU E 82 1 7 HELIX 4 4 GLN E 84 GLN E 96 1 13 HELIX 5 5 GLU E 127 GLY E 136 1 10 HELIX 6 6 SER E 139 LEU E 160 1 22 HELIX 7 7 LYS E 168 GLU E 170 5 3 HELIX 8 8 THR E 201 LEU E 205 5 5 HELIX 9 9 ALA E 206 LEU E 211 1 6 HELIX 10 10 LYS E 217 GLY E 234 1 18 HELIX 11 11 GLN E 242 SER E 252 1 11 HELIX 12 12 SER E 262 LEU E 273 1 12 HELIX 13 13 VAL E 288 ASN E 293 1 6 HELIX 14 14 HIS E 294 ALA E 298 5 5 HELIX 15 15 ASP E 301 GLN E 307 1 7 HELIX 16 16 THR I 6 SER I 13 1 8 SHEET 1 A 5 PHE E 43 THR E 51 0 SHEET 2 A 5 GLY E 55 HIS E 62 -1 O LEU E 59 N LYS E 47 SHEET 3 A 5 HIS E 68 ASP E 75 -1 O ILE E 73 N ARG E 56 SHEET 4 A 5 ASN E 115 GLU E 121 -1 O MET E 118 N LYS E 72 SHEET 5 A 5 LEU E 106 LYS E 111 -1 N GLU E 107 O VAL E 119 SHEET 1 B 2 LEU E 162 ILE E 163 0 SHEET 2 B 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 C 2 LEU E 172 ILE E 174 0 SHEET 2 C 2 ILE E 180 VAL E 182 -1 O GLN E 181 N LEU E 173 LINK C TRP E 196 N TPO E 197 1555 1555 1.33 LINK C TPO E 197 N LEU E 198 1555 1555 1.33 LINK C VAL E 337 N SEP E 338 1555 1555 1.33 LINK C SEP E 338 N ILE E 339 1555 1555 1.33 LINK C ALA I 20 N SEP I 21 1555 1555 1.33 LINK C SEP I 21 N ILE I 22 1555 1555 1.32 LINK OD1 ASN E 171 MG MG E 402 1555 1555 2.17 LINK OD2 ASP E 184 MG MG E 402 1555 1555 2.28 LINK OD1 ASP E 184 MG MG E 403 1555 1555 2.51 LINK OD2 ASP E 184 MG MG E 403 1555 1555 2.74 LINK N3B ANP E 401 MG MG E 402 1555 1555 2.02 LINK O2A ANP E 401 MG MG E 402 1555 1555 2.05 LINK O1B ANP E 401 MG MG E 403 1555 1555 2.15 LINK MG MG E 402 O HOH E 520 1555 1555 2.27 LINK MG MG E 402 O HOH I 104 1555 1555 2.16 LINK MG MG E 403 O HOH E 519 1555 1555 2.30 LINK MG MG E 403 O1P SEP I 21 1555 1555 2.10 LINK MG MG E 403 O HOH I 101 1555 1555 2.42 SITE 1 AC1 26 GLY E 50 GLY E 52 VAL E 57 ALA E 70 SITE 2 AC1 26 LYS E 72 VAL E 104 MET E 120 GLU E 121 SITE 3 AC1 26 TYR E 122 VAL E 123 GLU E 127 GLU E 170 SITE 4 AC1 26 ASN E 171 LEU E 173 THR E 183 ASP E 184 SITE 5 AC1 26 PHE E 327 MG E 402 MG E 403 HOH E 520 SITE 6 AC1 26 HOH E 556 HOH E 594 HOH E 646 ARG I 18 SITE 7 AC1 26 SEP I 21 HOH I 104 SITE 1 AC2 5 ASN E 171 ASP E 184 ANP E 401 HOH E 520 SITE 2 AC2 5 HOH I 104 SITE 1 AC3 5 ASP E 184 ANP E 401 HOH E 519 SEP I 21 SITE 2 AC3 5 HOH I 101 SITE 1 AC4 53 SER E 53 GLN E 84 GLU E 86 ARG E 93 SITE 2 AC4 53 GLU E 127 PHE E 129 ARG E 133 ASP E 166 SITE 3 AC4 53 LYS E 168 PRO E 169 GLU E 170 ASP E 184 SITE 4 AC4 53 PHE E 187 ARG E 190 LYS E 192 LEU E 198 SITE 5 AC4 53 CYS E 199 GLY E 200 PRO E 202 GLU E 203 SITE 6 AC4 53 GLU E 230 TYR E 235 PRO E 236 PHE E 239 SITE 7 AC4 53 ALA E 240 ASP E 241 ILE E 246 TYR E 330 SITE 8 AC4 53 GLU E 349 ANP E 401 MG E 403 HOH E 519 SITE 9 AC4 53 HOH E 530 HOH E 544 HOH E 558 HOH E 576 SITE 10 AC4 53 HOH E 596 HOH E 603 HOH E 622 HOH I 101 SITE 11 AC4 53 HOH I 102 HOH I 103 HOH I 104 HOH I 105 SITE 12 AC4 53 HOH I 106 HOH I 109 HOH I 110 HOH I 111 SITE 13 AC4 53 HOH I 112 HOH I 113 HOH I 114 HOH I 116 SITE 14 AC4 53 HOH I 117 CRYST1 71.545 79.060 80.090 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012486 0.00000