HEADER IMMUNE SYSTEM/VIRAL PROTEIN 24-OCT-12 4HPY TITLE CRYSTAL STRUCTURE OF RV144-ELICITED ANTIBODY CH59 IN COMPLEX WITH V2 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CH59 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CH59 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 11 CHAIN: P; COMPND 12 FRAGMENT: UNP RESIDUES 160-178; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 OTHER_DETAILS: PEPTIDE DERIVED FROM HIV-1 GP120 V2 REGION KEYWDS IMMUNOGLOBULIN, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.MCLELLAN,J.GORMAN,B.F.HAYNES,P.D.KWONG REVDAT 2 20-SEP-23 4HPY 1 REMARK REVDAT 1 06-FEB-13 4HPY 0 JRNL AUTH H.X.LIAO,M.BONSIGNORI,S.M.ALAM,J.S.MCLELLAN,G.D.TOMARAS, JRNL AUTH 2 M.A.MOODY,D.M.KOZINK,K.K.HWANG,X.CHEN,C.Y.TSAO,P.LIU,X.LU, JRNL AUTH 3 R.J.PARKS,D.C.MONTEFIORI,G.FERRARI,J.POLLARA,M.RAO, JRNL AUTH 4 K.K.PEACHMAN,S.SANTRA,N.L.LETVIN,N.KARASAVVAS,Z.Y.YANG, JRNL AUTH 5 K.DAI,M.PANCERA,J.GORMAN,K.WIEHE,N.I.NICELY,S.RERKS-NGARM, JRNL AUTH 6 S.NITAYAPHAN,J.KAEWKUNGWAL,P.PITISUTTITHUM,J.TARTAGLIA, JRNL AUTH 7 F.SINANGIL,J.H.KIM,N.L.MICHAEL,T.B.KEPLER,P.D.KWONG, JRNL AUTH 8 J.R.MASCOLA,G.J.NABEL,A.PINTER,S.ZOLLA-PAZNER,B.F.HAYNES JRNL TITL VACCINE INDUCTION OF ANTIBODIES AGAINST A STRUCTURALLY JRNL TITL 2 HETEROGENEOUS SITE OF IMMUNE PRESSURE WITHIN HIV-1 ENVELOPE JRNL TITL 3 PROTEIN VARIABLE REGIONS 1 AND 2. JRNL REF IMMUNITY V. 38 176 2013 JRNL REFN ISSN 1074-7613 JRNL PMID 23313589 JRNL DOI 10.1016/J.IMMUNI.2012.11.011 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8920 - 4.3662 1.00 2810 163 0.1711 0.1772 REMARK 3 2 4.3662 - 3.4716 1.00 2712 124 0.1577 0.1749 REMARK 3 3 3.4716 - 3.0345 1.00 2648 152 0.1680 0.1743 REMARK 3 4 3.0345 - 2.7578 1.00 2665 145 0.1761 0.1989 REMARK 3 5 2.7578 - 2.5606 1.00 2616 142 0.1795 0.1872 REMARK 3 6 2.5606 - 2.4099 1.00 2589 186 0.1802 0.1871 REMARK 3 7 2.4099 - 2.2894 1.00 2613 143 0.1688 0.2092 REMARK 3 8 2.2894 - 2.1899 1.00 2601 143 0.1677 0.1674 REMARK 3 9 2.1899 - 2.1057 1.00 2617 134 0.1575 0.1761 REMARK 3 10 2.1057 - 2.0331 1.00 2606 140 0.1576 0.1876 REMARK 3 11 2.0331 - 1.9696 1.00 2573 158 0.1678 0.1940 REMARK 3 12 1.9696 - 1.9133 1.00 2589 141 0.1617 0.1742 REMARK 3 13 1.9133 - 1.8630 1.00 2611 138 0.1669 0.2062 REMARK 3 14 1.8630 - 1.8176 1.00 2582 145 0.1774 0.1739 REMARK 3 15 1.8176 - 1.7763 1.00 2614 130 0.1703 0.2151 REMARK 3 16 1.7763 - 1.7385 1.00 2593 119 0.1743 0.1829 REMARK 3 17 1.7385 - 1.7037 1.00 2606 130 0.1705 0.2150 REMARK 3 18 1.7037 - 1.6716 1.00 2522 143 0.1757 0.2290 REMARK 3 19 1.6716 - 1.6418 1.00 2640 138 0.1799 0.2172 REMARK 3 20 1.6418 - 1.6139 1.00 2541 122 0.1770 0.1654 REMARK 3 21 1.6139 - 1.5879 1.00 2630 139 0.1874 0.1897 REMARK 3 22 1.5879 - 1.5635 1.00 2587 123 0.1854 0.2006 REMARK 3 23 1.5635 - 1.5405 1.00 2555 126 0.1952 0.2150 REMARK 3 24 1.5405 - 1.5188 1.00 2571 139 0.2060 0.2147 REMARK 3 25 1.5188 - 1.5000 0.96 2493 110 0.2065 0.2422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3445 REMARK 3 ANGLE : 0.998 4685 REMARK 3 CHIRALITY : 0.067 526 REMARK 3 PLANARITY : 0.005 600 REMARK 3 DIHEDRAL : 12.198 1236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 2:120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6347 26.7591 65.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0518 REMARK 3 T33: 0.0624 T12: -0.0008 REMARK 3 T13: -0.0044 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.5905 L22: 1.7798 REMARK 3 L33: 1.9302 L12: 0.2246 REMARK 3 L13: -0.4338 L23: -0.7072 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.0598 S13: -0.0141 REMARK 3 S21: -0.1200 S22: 0.0130 S23: 0.0308 REMARK 3 S31: 0.1220 S32: 0.0110 S33: -0.0312 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 121:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4387 23.5834 93.9722 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0762 REMARK 3 T33: 0.0968 T12: 0.0088 REMARK 3 T13: 0.0102 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.2503 L22: 1.7165 REMARK 3 L33: 1.5666 L12: 0.0126 REMARK 3 L13: -0.1829 L23: -0.0861 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.1032 S13: 0.1786 REMARK 3 S21: -0.0010 S22: 0.0402 S23: 0.0465 REMARK 3 S31: -0.0531 S32: -0.1173 S33: -0.0024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 0:109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3427 47.6855 70.1887 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0737 REMARK 3 T33: 0.0978 T12: -0.0127 REMARK 3 T13: -0.0135 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.0802 L22: 1.1745 REMARK 3 L33: 1.3050 L12: -0.2207 REMARK 3 L13: -0.8539 L23: 0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.1044 S13: 0.0841 REMARK 3 S21: 0.0215 S22: 0.0522 S23: -0.0331 REMARK 3 S31: -0.0272 S32: 0.0042 S33: -0.0287 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 110:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5886 35.4165 97.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0708 REMARK 3 T33: 0.0820 T12: 0.0080 REMARK 3 T13: 0.0020 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.8537 L22: 1.7641 REMARK 3 L33: 1.9368 L12: -0.1872 REMARK 3 L13: 0.2826 L23: -1.0538 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.0577 S13: -0.0527 REMARK 3 S21: 0.1738 S22: -0.0069 S23: -0.0480 REMARK 3 S31: -0.0021 S32: 0.0761 S33: 0.0013 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN P AND RESID 168:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4349 41.9886 61.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.1257 REMARK 3 T33: 0.1175 T12: -0.0203 REMARK 3 T13: 0.0086 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.8753 L22: 3.4379 REMARK 3 L33: 3.6766 L12: -0.2113 REMARK 3 L13: -0.8776 L23: 1.2203 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: 0.1800 S13: 0.1136 REMARK 3 S21: -0.2260 S22: 0.0552 S23: -0.4515 REMARK 3 S31: -0.2287 S32: 0.4623 S33: 0.0150 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4HPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG8000, 30% ISOPROPANOL, REMARK 280 0.1M IMIDAZOLE PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.94400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.55600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.55600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.94400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLU P 164 REMARK 465 LEU P 165 REMARK 465 ARG P 166 REMARK 465 ASP P 167 REMARK 465 LEU P 179 REMARK 465 ASP P 180 REMARK 465 ILE P 181 REMARK 465 VAL P 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 514 O HOH L 619 1.80 REMARK 500 O HOH H 438 O HOH H 504 1.85 REMARK 500 O HOH L 538 O HOH L 636 2.01 REMARK 500 O HOH H 411 O HOH H 431 2.04 REMARK 500 O HOH H 388 O HOH H 399 2.04 REMARK 500 O HOH L 496 O HOH L 622 2.04 REMARK 500 O HOH H 430 O HOH H 528 2.04 REMARK 500 O HOH H 502 O HOH L 524 2.05 REMARK 500 O HOH L 465 O HOH L 667 2.06 REMARK 500 O HOH L 658 O HOH L 664 2.06 REMARK 500 O HOH L 651 O HOH L 656 2.07 REMARK 500 O HOH L 639 O HOH L 659 2.10 REMARK 500 O HOH H 503 O HOH L 522 2.11 REMARK 500 O HOH H 510 O HOH H 520 2.12 REMARK 500 O HOH H 344 O HOH H 450 2.14 REMARK 500 NH1 ARG L 189 O HOH L 651 2.16 REMARK 500 O HOH L 575 O HOH L 640 2.16 REMARK 500 O HOH L 583 O HOH L 628 2.17 REMARK 500 O HOH H 431 O HOH H 468 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 521 O HOH L 656 2664 1.95 REMARK 500 O HOH L 443 O HOH L 619 3646 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 63.89 63.72 REMARK 500 SER L 1 -168.80 -115.99 REMARK 500 ASP L 51 -48.11 71.87 REMARK 500 ASP L 151 -114.90 53.95 REMARK 500 ASN L 170 -3.43 75.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HPO RELATED DB: PDB REMARK 900 RELATED ID: 4HQQ RELATED DB: PDB DBREF 4HPY P 164 182 UNP Q9WLG7 Q9WLG7_9HIV1 160 178 DBREF 4HPY H 1 218 PDB 4HPY 4HPY 1 218 DBREF 4HPY L 0 212 PDB 4HPY 4HPY 0 212 SEQRES 1 H 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 225 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 225 PHE THR PHE ASP ASP GLY ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE SER SEQRES 5 H 225 TRP ASN SER ASN ILE ILE ALA TYR ALA ASP SER VAL LYS SEQRES 6 H 225 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 225 LEU TYR LEU GLU MET ASN SER LEU ARG VAL GLU ASP THR SEQRES 8 H 225 ALA LEU TYR TYR CYS ALA LYS ASP SER PRO ARG GLY GLU SEQRES 9 H 225 LEU PRO LEU ASN TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 225 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 225 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 225 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 225 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 225 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 225 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 225 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 225 PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 18 H 225 SER CYS ASP LYS SEQRES 1 L 215 ASP SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SEQRES 2 L 215 SER PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP SEQRES 3 L 215 ALA LEU PRO LYS ASN TYR ALA TYR TRP TYR GLN GLN LYS SEQRES 4 L 215 SER GLY GLN ALA PRO VAL LEU VAL ILE TYR GLU ASP SER SEQRES 5 L 215 LYS ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SEQRES 6 L 215 SER SER GLY THR MET ALA THR LEU THR ILE SER GLY ALA SEQRES 7 L 215 GLN VAL GLU ASP GLU ALA ASP TYR TYR CYS TYR SER THR SEQRES 8 L 215 ASP SER SER GLY ASN HIS ARG VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 L 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 L 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 L 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 L 215 VAL ALA PRO THR GLU CYS SER SEQRES 1 P 19 GLU LEU ARG ASP LYS LYS GLN LYS VAL HIS ALA LEU PHE SEQRES 2 P 19 TYR LYS LEU ASP ILE VAL HET GOL L 301 6 HET GOL L 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *521(H2 O) HELIX 1 1 ASN H 73 LYS H 75 5 3 HELIX 2 2 ARG H 83 THR H 87 5 5 HELIX 3 3 SER H 96 GLU H 100 5 5 HELIX 4 4 SER H 127 LYS H 129 5 3 HELIX 5 5 SER H 156 ALA H 158 5 3 HELIX 6 6 SER H 187 LEU H 189 5 3 HELIX 7 7 LYS H 201 ASN H 204 5 4 HELIX 8 8 GLN L 79 GLU L 83 5 5 HELIX 9 9 SER L 121 GLN L 126 1 6 HELIX 10 10 THR L 181 HIS L 188 1 8 HELIX 11 11 HIS P 173 TYR P 177 5 5 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 A 4 SER H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 A 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLU H 81 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 B 6 ALA H 88 LYS H 94 -1 N TYR H 90 O THR H 107 SHEET 4 B 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 B 6 ILE H 57 TYR H 59 -1 O ALA H 58 N GLY H 50 SHEET 1 C 4 LEU H 11 VAL H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 C 4 ALA H 88 LYS H 94 -1 N TYR H 90 O THR H 107 SHEET 4 C 4 TYR H 102 TRP H 103 -1 O TYR H 102 N LYS H 94 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 D 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 D 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 E 4 THR H 131 SER H 132 0 SHEET 2 E 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 E 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 E 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 F 3 THR H 151 TRP H 154 0 SHEET 2 F 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 F 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 G 5 SER L 9 VAL L 13 0 SHEET 2 G 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 G 5 ALA L 84 THR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 G 5 TYR L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 G 5 VAL L 45 ILE L 48 -1 O VAL L 47 N TRP L 35 SHEET 1 H 4 SER L 9 VAL L 13 0 SHEET 2 H 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 H 4 ALA L 84 THR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 H 4 ARG L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 I 3 ALA L 19 SER L 24 0 SHEET 2 I 3 MET L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 I 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 J 4 SER L 114 PHE L 118 0 SHEET 2 J 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 J 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 J 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 K 4 SER L 114 PHE L 118 0 SHEET 2 K 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 K 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 K 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 L 4 SER L 153 VAL L 155 0 SHEET 2 L 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 L 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 L 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -5.12 CISPEP 2 GLU H 148 PRO H 149 0 2.32 CISPEP 3 TYR L 140 PRO L 141 0 1.02 SITE 1 AC1 8 THR H 183 SER L 114 VAL L 115 THR L 116 SITE 2 AC1 8 LEU L 135 ILE L 136 SER L 137 HOH L 632 SITE 1 AC2 7 GLU L 83 VAL L 106 GLY L 107 GLN L 108 SITE 2 AC2 7 TYR L 140 HOH L 418 HOH L 422 CRYST1 41.888 79.150 127.112 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007867 0.00000