HEADER CELL ADHESION 25-OCT-12 4HQL TITLE CRYSTAL STRUCTURE OF MAGNESIUM-LOADED PLASMODIUM VIVAX TRAP PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPOROZOITE SURFACE PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ADHESIVE DOMAINS (UNP RESIDUES 25-283); COMPND 5 SYNONYM: THROMBOSPONDIN REPEAT ANONYMOUS PROTEIN, TRAP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 STRAIN: SAL I; SOURCE 5 GENE: SSP2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS MALARIA, PARASITE MOTILITY, VWA DOMAIN, TSR DOMAIN, RECEPTOR ON KEYWDS 2 SPOROZOITE, VACCINE TARGET, SPOROZOITE SURFACE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.SONG,A.C.KOKSAL,C.LU,T.A.SPRINGER REVDAT 4 20-SEP-23 4HQL 1 HETSYN REVDAT 3 29-JUL-20 4HQL 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 09-JAN-13 4HQL 1 JRNL REVDAT 1 26-DEC-12 4HQL 0 JRNL AUTH G.SONG,A.C.KOKSAL,C.LU,T.A.SPRINGER JRNL TITL SHAPE CHANGE IN THE RECEPTOR FOR GLIDING MOTILITY IN JRNL TITL 2 PLASMODIUM SPOROZOITES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 21420 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23236185 JRNL DOI 10.1073/PNAS.1218581109 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 45378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7273 - 5.6426 0.98 2844 163 0.1836 0.2247 REMARK 3 2 5.6426 - 4.4804 1.00 2768 140 0.1461 0.2001 REMARK 3 3 4.4804 - 3.9145 1.00 2723 150 0.1431 0.1741 REMARK 3 4 3.9145 - 3.5568 1.00 2728 140 0.1509 0.1879 REMARK 3 5 3.5568 - 3.3020 1.00 2709 130 0.1582 0.1696 REMARK 3 6 3.3020 - 3.1074 1.00 2693 144 0.1641 0.2231 REMARK 3 7 3.1074 - 2.9518 1.00 2697 142 0.1654 0.2226 REMARK 3 8 2.9518 - 2.8233 1.00 2670 159 0.1644 0.2056 REMARK 3 9 2.8233 - 2.7147 1.00 2680 133 0.1606 0.1960 REMARK 3 10 2.7147 - 2.6210 1.00 2699 127 0.1648 0.1984 REMARK 3 11 2.6210 - 2.5391 1.00 2668 153 0.1687 0.2279 REMARK 3 12 2.5391 - 2.4665 1.00 2681 127 0.1843 0.2362 REMARK 3 13 2.4665 - 2.4016 1.00 2671 131 0.1797 0.2543 REMARK 3 14 2.4016 - 2.3430 1.00 2655 139 0.1784 0.2182 REMARK 3 15 2.3430 - 2.2897 1.00 2624 160 0.1880 0.1983 REMARK 3 16 2.2897 - 2.2410 0.97 2580 150 0.2023 0.2408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4176 REMARK 3 ANGLE : 1.010 5631 REMARK 3 CHIRALITY : 0.071 646 REMARK 3 PLANARITY : 0.004 721 REMARK 3 DIHEDRAL : 12.658 1585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5233 -15.0650 -11.4901 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1836 REMARK 3 T33: 0.2052 T12: 0.0408 REMARK 3 T13: 0.0262 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.4345 L22: 2.1801 REMARK 3 L33: 3.8592 L12: 1.0843 REMARK 3 L13: 0.9989 L23: 0.4239 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.3751 S13: 0.3454 REMARK 3 S21: -0.2955 S22: 0.0426 S23: 0.0026 REMARK 3 S31: -0.1738 S32: 0.0229 S33: -0.0191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5741 -42.7884 -56.3980 REMARK 3 T TENSOR REMARK 3 T11: 1.5021 T22: 0.5467 REMARK 3 T33: 1.0135 T12: 0.0422 REMARK 3 T13: 0.2257 T23: -0.1291 REMARK 3 L TENSOR REMARK 3 L11: 3.4061 L22: 9.9488 REMARK 3 L33: 8.9647 L12: 2.0627 REMARK 3 L13: 1.4048 L23: 9.3818 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0384 S13: 0.2401 REMARK 3 S21: 0.8913 S22: 0.2112 S23: 0.3158 REMARK 3 S31: 0.1466 S32: 0.0996 S33: -0.2417 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9479 -10.3608 -39.7883 REMARK 3 T TENSOR REMARK 3 T11: 0.5893 T22: 0.8523 REMARK 3 T33: 0.2222 T12: -0.0023 REMARK 3 T13: -0.0702 T23: 0.3664 REMARK 3 L TENSOR REMARK 3 L11: 7.8579 L22: 0.8451 REMARK 3 L33: 5.0187 L12: 2.8581 REMARK 3 L13: -6.2990 L23: -2.3441 REMARK 3 S TENSOR REMARK 3 S11: 0.1678 S12: -0.7113 S13: -0.0084 REMARK 3 S21: 0.1605 S22: 0.3187 S23: -0.3274 REMARK 3 S31: -0.0189 S32: -0.6041 S33: -0.1887 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2852 -5.1853 -59.1308 REMARK 3 T TENSOR REMARK 3 T11: 0.3419 T22: 0.4667 REMARK 3 T33: 0.4211 T12: 0.0780 REMARK 3 T13: 0.0081 T23: 0.1781 REMARK 3 L TENSOR REMARK 3 L11: 4.2587 L22: 4.3115 REMARK 3 L33: 5.1946 L12: -0.0127 REMARK 3 L13: 1.1757 L23: 0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0005 S13: -0.3861 REMARK 3 S21: 0.1943 S22: -0.1967 S23: -0.7707 REMARK 3 S31: 0.6089 S32: 0.9131 S33: 0.1514 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1058 1.8391 -63.6678 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2451 REMARK 3 T33: 0.2805 T12: 0.0652 REMARK 3 T13: -0.0226 T23: 0.0833 REMARK 3 L TENSOR REMARK 3 L11: 6.6174 L22: 6.0200 REMARK 3 L33: 6.2018 L12: 5.8452 REMARK 3 L13: -2.0637 L23: -3.4189 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.2371 S13: -0.3338 REMARK 3 S21: -0.0190 S22: -0.1057 S23: -0.0557 REMARK 3 S31: 0.0958 S32: -0.0677 S33: 0.1470 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 200 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3553 11.7965 -57.0770 REMARK 3 T TENSOR REMARK 3 T11: 0.7475 T22: 0.7389 REMARK 3 T33: 0.5864 T12: 0.1341 REMARK 3 T13: -0.0919 T23: 0.1101 REMARK 3 L TENSOR REMARK 3 L11: 7.3515 L22: 7.4273 REMARK 3 L33: 2.0307 L12: 0.0216 REMARK 3 L13: 3.2126 L23: 1.0970 REMARK 3 S TENSOR REMARK 3 S11: -0.6496 S12: 0.1819 S13: 2.3322 REMARK 3 S21: 0.6482 S22: 0.4188 S23: 0.8764 REMARK 3 S31: -2.3371 S32: -0.8452 S33: 0.3824 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6457 -2.5558 -41.0831 REMARK 3 T TENSOR REMARK 3 T11: 0.9788 T22: 0.5798 REMARK 3 T33: 0.3758 T12: -0.0858 REMARK 3 T13: 0.1104 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.9397 L22: 8.5730 REMARK 3 L33: 2.0349 L12: 7.1235 REMARK 3 L13: 1.8251 L23: -9.8175 REMARK 3 S TENSOR REMARK 3 S11: 0.2875 S12: -0.3044 S13: 0.6979 REMARK 3 S21: 0.7078 S22: 0.4052 S23: 0.0047 REMARK 3 S31: -0.7216 S32: -0.3165 S33: -0.4088 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8360 -16.3016 -4.1493 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1933 REMARK 3 T33: 0.1834 T12: -0.0077 REMARK 3 T13: -0.0630 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 8.9118 L22: 3.0591 REMARK 3 L33: 8.4123 L12: -1.4284 REMARK 3 L13: -7.5235 L23: 1.3782 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.2897 S13: 0.3925 REMARK 3 S21: 0.0045 S22: -0.1005 S23: 0.1506 REMARK 3 S31: -0.0924 S32: -0.0938 S33: 0.1078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 41.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 13.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35300 REMARK 200 FOR SHELL : 4.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SHU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 15% PEG20000, REMARK 280 EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.80050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.62700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.98150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.62700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.80050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.98150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 VAL A 28 REMARK 465 VAL A 29 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 ALA A 290 REMARK 465 ASP B 25 REMARK 465 GLU B 26 REMARK 465 LYS B 27 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 ALA B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 597 O HOH B 599 2.05 REMARK 500 O HOH B 509 O HOH B 511 2.09 REMARK 500 O HOH A 443 O HOH A 592 2.10 REMARK 500 O HOH B 600 O HOH B 601 2.15 REMARK 500 O HOH A 587 O HOH A 588 2.16 REMARK 500 O HOH B 479 O HOH B 488 2.18 REMARK 500 O HOH A 533 O HOH A 547 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 BGC C 2 O HOH B 626 3544 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 81 -108.27 -115.65 REMARK 500 ASN A 207 76.28 54.82 REMARK 500 TYR A 213 26.90 -140.91 REMARK 500 ALA A 214 -134.35 -100.81 REMARK 500 MET A 273 118.69 -160.96 REMARK 500 GLU A 279 58.56 -90.70 REMARK 500 THR B 81 -113.07 -107.84 REMARK 500 ALA B 214 -133.13 -114.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 52 OG REMARK 620 2 SER A 54 OG 94.4 REMARK 620 3 THR A 127 OG1 91.9 172.1 REMARK 620 4 HOH A 401 O 176.4 88.5 85.0 REMARK 620 5 HOH A 402 O 89.4 85.2 99.5 93.0 REMARK 620 6 HOH A 403 O 89.1 87.8 87.6 88.8 172.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 52 OG REMARK 620 2 SER B 54 OG 97.0 REMARK 620 3 THR B 127 OG1 86.4 176.4 REMARK 620 4 HOH B 401 O 174.9 87.7 88.9 REMARK 620 5 HOH B 402 O 89.1 85.2 96.0 89.3 REMARK 620 6 HOH B 597 O 90.5 86.2 92.7 91.9 171.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HQF RELATED DB: PDB REMARK 900 RELATED ID: 4HQK RELATED DB: PDB REMARK 900 RELATED ID: 4HQN RELATED DB: PDB REMARK 900 RELATED ID: 4HQO RELATED DB: PDB DBREF 4HQL A 25 283 UNP Q9TVF0 Q9TVF0_PLAVI 25 283 DBREF 4HQL B 25 283 UNP Q9TVF0 Q9TVF0_PLAVI 25 283 SEQADV 4HQL GLN A 42 UNP Q9TVF0 SER 42 ENGINEERED MUTATION SEQADV 4HQL SER A 91 UNP Q9TVF0 ASN 91 ENGINEERED MUTATION SEQADV 4HQL SER A 128 UNP Q9TVF0 ASN 128 ENGINEERED MUTATION SEQADV 4HQL ARG A 180 UNP Q9TVF0 SER 180 ENGINEERED MUTATION SEQADV 4HQL HIS A 284 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS A 285 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS A 286 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS A 287 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS A 288 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS A 289 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL ALA A 290 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL GLN B 42 UNP Q9TVF0 SER 42 ENGINEERED MUTATION SEQADV 4HQL SER B 91 UNP Q9TVF0 ASN 91 ENGINEERED MUTATION SEQADV 4HQL SER B 128 UNP Q9TVF0 ASN 128 ENGINEERED MUTATION SEQADV 4HQL ARG B 180 UNP Q9TVF0 SER 180 ENGINEERED MUTATION SEQADV 4HQL HIS B 284 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS B 285 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS B 286 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS B 287 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS B 288 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL HIS B 289 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQL ALA B 290 UNP Q9TVF0 EXPRESSION TAG SEQRES 1 A 266 ASP GLU LYS VAL VAL ASP GLU VAL LYS TYR SER GLU GLU SEQRES 2 A 266 VAL CYS ASN GLU GLN VAL ASP LEU TYR LEU LEU VAL ASP SEQRES 3 A 266 GLY SER GLY SER ILE GLY TYR PRO ASN TRP ILE THR LYS SEQRES 4 A 266 VAL ILE PRO MET LEU ASN GLY LEU ILE ASN SER LEU SER SEQRES 5 A 266 LEU SER ARG ASP THR ILE ASN LEU TYR MET ASN LEU PHE SEQRES 6 A 266 GLY SER TYR THR THR GLU LEU ILE ARG LEU GLY SER GLY SEQRES 7 A 266 GLN SER ILE ASP LYS ARG GLN ALA LEU SER LYS VAL THR SEQRES 8 A 266 GLU LEU ARG LYS THR TYR THR PRO TYR GLY THR THR SER SEQRES 9 A 266 MET THR ALA ALA LEU ASP GLU VAL GLN LYS HIS LEU ASN SEQRES 10 A 266 ASP ARG VAL ASN ARG GLU LYS ALA ILE GLN LEU VAL ILE SEQRES 11 A 266 LEU MET THR ASP GLY VAL PRO ASN SER LYS TYR ARG ALA SEQRES 12 A 266 LEU GLU VAL ALA ASN LYS LEU LYS GLN ARG ASN VAL ARG SEQRES 13 A 266 LEU ALA VAL ILE GLY ILE GLY GLN GLY ILE ASN HIS GLN SEQRES 14 A 266 PHE ASN ARG LEU ILE ALA GLY CYS ARG PRO ARG GLU PRO SEQRES 15 A 266 ASN CYS LYS PHE TYR SER TYR ALA ASP TRP ASN GLU ALA SEQRES 16 A 266 VAL ALA LEU ILE LYS PRO PHE ILE ALA LYS VAL CYS THR SEQRES 17 A 266 GLU VAL GLU ARG VAL ALA ASN CYS GLY PRO TRP ASP PRO SEQRES 18 A 266 TRP THR ALA CYS SER VAL THR CYS GLY ARG GLY THR HIS SEQRES 19 A 266 SER ARG SER ARG PRO SER LEU HIS GLU LYS CYS THR THR SEQRES 20 A 266 HIS MET VAL SER GLU CYS GLU GLU GLY GLU CYS PRO HIS SEQRES 21 A 266 HIS HIS HIS HIS HIS ALA SEQRES 1 B 266 ASP GLU LYS VAL VAL ASP GLU VAL LYS TYR SER GLU GLU SEQRES 2 B 266 VAL CYS ASN GLU GLN VAL ASP LEU TYR LEU LEU VAL ASP SEQRES 3 B 266 GLY SER GLY SER ILE GLY TYR PRO ASN TRP ILE THR LYS SEQRES 4 B 266 VAL ILE PRO MET LEU ASN GLY LEU ILE ASN SER LEU SER SEQRES 5 B 266 LEU SER ARG ASP THR ILE ASN LEU TYR MET ASN LEU PHE SEQRES 6 B 266 GLY SER TYR THR THR GLU LEU ILE ARG LEU GLY SER GLY SEQRES 7 B 266 GLN SER ILE ASP LYS ARG GLN ALA LEU SER LYS VAL THR SEQRES 8 B 266 GLU LEU ARG LYS THR TYR THR PRO TYR GLY THR THR SER SEQRES 9 B 266 MET THR ALA ALA LEU ASP GLU VAL GLN LYS HIS LEU ASN SEQRES 10 B 266 ASP ARG VAL ASN ARG GLU LYS ALA ILE GLN LEU VAL ILE SEQRES 11 B 266 LEU MET THR ASP GLY VAL PRO ASN SER LYS TYR ARG ALA SEQRES 12 B 266 LEU GLU VAL ALA ASN LYS LEU LYS GLN ARG ASN VAL ARG SEQRES 13 B 266 LEU ALA VAL ILE GLY ILE GLY GLN GLY ILE ASN HIS GLN SEQRES 14 B 266 PHE ASN ARG LEU ILE ALA GLY CYS ARG PRO ARG GLU PRO SEQRES 15 B 266 ASN CYS LYS PHE TYR SER TYR ALA ASP TRP ASN GLU ALA SEQRES 16 B 266 VAL ALA LEU ILE LYS PRO PHE ILE ALA LYS VAL CYS THR SEQRES 17 B 266 GLU VAL GLU ARG VAL ALA ASN CYS GLY PRO TRP ASP PRO SEQRES 18 B 266 TRP THR ALA CYS SER VAL THR CYS GLY ARG GLY THR HIS SEQRES 19 B 266 SER ARG SER ARG PRO SER LEU HIS GLU LYS CYS THR THR SEQRES 20 B 266 HIS MET VAL SER GLU CYS GLU GLU GLY GLU CYS PRO HIS SEQRES 21 B 266 HIS HIS HIS HIS HIS ALA MODRES 4HQL THR B 252 THR GLYCOSYLATION SITE MODRES 4HQL THR A 252 THR GLYCOSYLATION SITE HET FUC C 1 10 HET BGC C 2 11 HET FUC D 1 10 HET BGC D 2 11 HET MG A 301 1 HET CL A 304 1 HET MG B 301 1 HET CL B 304 1 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 BGC 2(C6 H12 O6) FORMUL 5 MG 2(MG 2+) FORMUL 6 CL 2(CL 1-) FORMUL 9 HOH *537(H2 O) HELIX 1 1 GLY A 56 LYS A 63 1 8 HELIX 2 2 LYS A 63 SER A 74 1 12 HELIX 3 3 SER A 101 ASP A 106 1 6 HELIX 4 4 ASP A 106 TYR A 121 1 16 HELIX 5 5 SER A 128 ASP A 142 1 15 HELIX 6 6 SER A 163 GLN A 176 1 14 HELIX 7 7 ASN A 191 GLY A 200 1 10 HELIX 8 8 ASP A 215 ALA A 228 1 14 HELIX 9 9 SER B 52 ILE B 55 5 4 HELIX 10 10 GLY B 56 LYS B 63 1 8 HELIX 11 11 LYS B 63 SER B 74 1 12 HELIX 12 12 SER B 101 ASP B 106 1 6 HELIX 13 13 ASP B 106 TYR B 121 1 16 HELIX 14 14 SER B 128 ASP B 142 1 15 HELIX 15 15 SER B 163 ARG B 177 1 15 HELIX 16 16 ASN B 191 GLY B 200 1 10 HELIX 17 17 ASP B 215 ALA B 228 1 14 SHEET 1 A 4 GLU A 31 VAL A 38 0 SHEET 2 A 4 CYS A 231 ASN A 239 -1 O ALA A 238 N VAL A 32 SHEET 3 A 4 GLU B 31 ASN B 40 1 O CYS B 39 N CYS A 231 SHEET 4 A 4 VAL B 230 ASN B 239 -1 O VAL B 234 N GLU B 36 SHEET 1 B 6 THR A 93 ILE A 97 0 SHEET 2 B 6 ILE A 82 PHE A 89 -1 N LEU A 88 O THR A 94 SHEET 3 B 6 VAL A 43 ASP A 50 1 N VAL A 49 O ASN A 87 SHEET 4 B 6 ILE A 150 THR A 157 1 O LEU A 152 N TYR A 46 SHEET 5 B 6 ARG A 180 GLY A 185 1 O ARG A 180 N VAL A 153 SHEET 6 B 6 TYR A 211 SER A 212 1 O SER A 212 N GLY A 185 SHEET 1 C 2 ARG A 255 SER A 261 0 SHEET 2 C 2 HIS A 272 GLU A 278 -1 O CYS A 277 N GLY A 256 SHEET 1 D 6 THR B 93 ILE B 97 0 SHEET 2 D 6 ILE B 82 PHE B 89 -1 N MET B 86 O LEU B 96 SHEET 3 D 6 VAL B 43 ASP B 50 1 N LEU B 47 O TYR B 85 SHEET 4 D 6 ILE B 150 THR B 157 1 O ILE B 154 N LEU B 48 SHEET 5 D 6 ARG B 180 GLY B 185 1 O ARG B 180 N VAL B 153 SHEET 6 D 6 TYR B 211 SER B 212 1 O SER B 212 N GLY B 185 SHEET 1 E 2 ARG B 255 SER B 261 0 SHEET 2 E 2 HIS B 272 GLU B 278 -1 O SER B 275 N HIS B 258 SSBOND 1 CYS A 39 CYS A 231 1555 1555 2.05 SSBOND 2 CYS A 201 CYS A 208 1555 1555 2.05 SSBOND 3 CYS A 240 CYS A 269 1555 1555 2.03 SSBOND 4 CYS A 249 CYS A 277 1555 1555 2.04 SSBOND 5 CYS A 253 CYS A 282 1555 1555 2.04 SSBOND 6 CYS B 39 CYS B 231 1555 1555 2.04 SSBOND 7 CYS B 201 CYS B 208 1555 1555 2.05 SSBOND 8 CYS B 240 CYS B 269 1555 1555 2.07 SSBOND 9 CYS B 249 CYS B 277 1555 1555 2.07 SSBOND 10 CYS B 253 CYS B 282 1555 1555 2.05 LINK OG1 THR A 252 C1 FUC C 1 1555 1555 1.52 LINK OG1 THR B 252 C1 FUC D 1 1555 1555 1.50 LINK O3 FUC C 1 C1 BGC C 2 1555 1555 1.50 LINK O3 FUC D 1 C1 BGC D 2 1555 1555 1.50 LINK OG SER A 52 MG MG A 301 1555 1555 2.10 LINK OG SER A 54 MG MG A 301 1555 1555 2.12 LINK OG1 THR A 127 MG MG A 301 1555 1555 2.19 LINK MG MG A 301 O HOH A 401 1555 1555 2.08 LINK MG MG A 301 O HOH A 402 1555 1555 2.11 LINK MG MG A 301 O HOH A 403 1555 1555 2.05 LINK OG SER B 52 MG MG B 301 1555 1555 2.10 LINK OG SER B 54 MG MG B 301 1555 1555 2.17 LINK OG1 THR B 127 MG MG B 301 1555 1555 2.12 LINK MG MG B 301 O HOH B 401 1555 1555 2.07 LINK MG MG B 301 O HOH B 402 1555 1555 2.08 LINK MG MG B 301 O HOH B 597 1555 1555 2.12 CRYST1 59.601 97.963 159.254 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006279 0.00000