HEADER CELL ADHESION 25-OCT-12 4HQO TITLE CRYSTAL STRUCTURE OF PLASMODIUM VIVAX TRAP PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPOROZOITE SURFACE PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ADHESIVE DOMAINS (UNP RESIDUES 25-283); COMPND 5 SYNONYM: THROMBOSPONDIN REPEAT ANONYMOUS PROTEIN, TRAP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 STRAIN: SAL I; SOURCE 5 GENE: SSP2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS MALARIA, GLIDING MOTILITY, VWA DOMAIN, TSR DOMAIN, EXTENSIBLE BETA- KEYWDS 2 RIBBON, RECEPTOR ON SPOROZOITE, VACCINE TARGET, SPOROZOITE SURFACE, KEYWDS 3 CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.SONG,A.C.KOKSAL,C.LU,T.A.SPRINGER REVDAT 4 20-SEP-23 4HQO 1 HETSYN REVDAT 3 29-JUL-20 4HQO 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 09-JAN-13 4HQO 1 JRNL REVDAT 1 26-DEC-12 4HQO 0 JRNL AUTH G.SONG,A.C.KOKSAL,C.LU,T.A.SPRINGER JRNL TITL SHAPE CHANGE IN THE RECEPTOR FOR GLIDING MOTILITY IN JRNL TITL 2 PLASMODIUM SPOROZOITES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 21420 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23236185 JRNL DOI 10.1073/PNAS.1218581109 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 46085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4417 - 5.6383 0.98 2759 144 0.1801 0.1884 REMARK 3 2 5.6383 - 4.4769 0.99 2680 138 0.1419 0.1930 REMARK 3 3 4.4769 - 3.9114 0.99 2617 138 0.1274 0.1695 REMARK 3 4 3.9114 - 3.5540 0.99 2618 108 0.1410 0.1569 REMARK 3 5 3.5540 - 3.2994 0.99 2610 130 0.1419 0.1802 REMARK 3 6 3.2994 - 3.1049 0.99 2602 148 0.1467 0.1931 REMARK 3 7 3.1049 - 2.9495 0.99 2560 152 0.1625 0.2193 REMARK 3 8 2.9495 - 2.8211 0.99 2595 133 0.1673 0.2095 REMARK 3 9 2.8211 - 2.7125 1.00 2608 127 0.1764 0.2489 REMARK 3 10 2.7125 - 2.6189 0.99 2557 143 0.1739 0.2663 REMARK 3 11 2.6189 - 2.5370 0.99 2568 140 0.1851 0.2159 REMARK 3 12 2.5370 - 2.4645 0.99 2560 149 0.1863 0.2162 REMARK 3 13 2.4645 - 2.3997 0.99 2549 144 0.1839 0.2359 REMARK 3 14 2.3997 - 2.3411 0.98 2524 130 0.1824 0.2268 REMARK 3 15 2.3411 - 2.2879 0.98 2548 138 0.1891 0.2717 REMARK 3 16 2.2879 - 2.2392 0.97 2521 126 0.2030 0.2460 REMARK 3 17 2.2392 - 2.1940 0.88 2288 133 0.2198 0.2512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4206 REMARK 3 ANGLE : 0.931 5674 REMARK 3 CHIRALITY : 0.063 649 REMARK 3 PLANARITY : 0.004 725 REMARK 3 DIHEDRAL : 12.752 1586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6336 -15.0894 -11.1890 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.2324 REMARK 3 T33: 0.2323 T12: 0.0405 REMARK 3 T13: 0.0198 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 3.2575 L22: 2.2797 REMARK 3 L33: 3.5508 L12: 1.3193 REMARK 3 L13: 0.6116 L23: -0.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.3461 S13: 0.3596 REMARK 3 S21: -0.2733 S22: 0.0667 S23: 0.0386 REMARK 3 S31: -0.1920 S32: 0.0061 S33: 0.0427 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6148 -44.8223 -60.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.8918 T22: 0.4545 REMARK 3 T33: 1.0124 T12: 0.0030 REMARK 3 T13: 0.1723 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.4163 L22: 5.5971 REMARK 3 L33: 8.7602 L12: 0.4211 REMARK 3 L13: 0.0572 L23: 5.4967 REMARK 3 S TENSOR REMARK 3 S11: 0.2802 S12: -0.3386 S13: 0.8628 REMARK 3 S21: 0.5453 S22: 0.2216 S23: 0.8058 REMARK 3 S31: -0.5895 S32: -0.1607 S33: -0.4915 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2818 -17.6261 -25.5259 REMARK 3 T TENSOR REMARK 3 T11: 0.9488 T22: 1.0277 REMARK 3 T33: 0.7138 T12: -0.1345 REMARK 3 T13: 0.1691 T23: 0.1998 REMARK 3 L TENSOR REMARK 3 L11: 2.0501 L22: 8.5042 REMARK 3 L33: 2.0454 L12: 6.2375 REMARK 3 L13: 1.9129 L23: -7.5133 REMARK 3 S TENSOR REMARK 3 S11: -0.2710 S12: -0.4187 S13: 0.1220 REMARK 3 S21: -0.2364 S22: 0.6085 S23: 0.7732 REMARK 3 S31: 1.4529 S32: -0.7942 S33: -0.1060 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3967 -6.6849 -57.2289 REMARK 3 T TENSOR REMARK 3 T11: 0.4665 T22: 0.4496 REMARK 3 T33: 0.4027 T12: 0.0814 REMARK 3 T13: 0.0169 T23: 0.1797 REMARK 3 L TENSOR REMARK 3 L11: 3.0098 L22: 3.8968 REMARK 3 L33: 5.6153 L12: 1.0176 REMARK 3 L13: -0.3528 L23: -1.8636 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.2796 S13: -0.5258 REMARK 3 S21: 0.0933 S22: -0.2896 S23: -0.5420 REMARK 3 S31: 0.6751 S32: 0.4788 S33: 0.2544 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2435 5.2288 -60.8091 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.4470 REMARK 3 T33: 0.3450 T12: 0.0694 REMARK 3 T13: -0.0271 T23: 0.1025 REMARK 3 L TENSOR REMARK 3 L11: 4.5141 L22: 7.6725 REMARK 3 L33: 6.4138 L12: 1.7476 REMARK 3 L13: 2.9828 L23: -0.0973 REMARK 3 S TENSOR REMARK 3 S11: -0.1648 S12: -0.0817 S13: 0.3080 REMARK 3 S21: 0.0362 S22: 0.0015 S23: 0.3420 REMARK 3 S31: -0.5394 S32: -0.2605 S33: 0.1558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0357 -3.4036 -40.4243 REMARK 3 T TENSOR REMARK 3 T11: 0.5878 T22: 0.6563 REMARK 3 T33: 0.3810 T12: -0.0400 REMARK 3 T13: -0.0466 T23: 0.1243 REMARK 3 L TENSOR REMARK 3 L11: 5.9278 L22: 7.9162 REMARK 3 L33: 6.9873 L12: 6.2920 REMARK 3 L13: -5.5980 L23: -4.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.1361 S12: -0.0877 S13: 0.0705 REMARK 3 S21: 0.2600 S22: 0.1626 S23: 0.1147 REMARK 3 S31: -0.6235 S32: -0.5910 S33: -0.3515 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6464 -16.4760 -2.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.2763 REMARK 3 T33: 0.2605 T12: -0.0078 REMARK 3 T13: -0.0565 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 10.0309 L22: 5.4384 REMARK 3 L33: 5.7360 L12: -1.4753 REMARK 3 L13: -5.3578 L23: 1.1493 REMARK 3 S TENSOR REMARK 3 S11: 0.1648 S12: 0.2189 S13: 0.4812 REMARK 3 S21: 0.0396 S22: -0.1985 S23: 0.0278 REMARK 3 S31: -0.2389 S32: 0.0717 S33: -0.0259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.194 REMARK 200 RESOLUTION RANGE LOW (A) : 42.434 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SHU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 15% PEG20000, REMARK 280 EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.14700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.27350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.23700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.27350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.14700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.23700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 VAL A 28 REMARK 465 VAL A 29 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 ALA A 290 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 ALA B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 FUC D 1 O5 BGC D 2 2.16 REMARK 500 O HOH A 687 O HOH A 745 2.16 REMARK 500 O HOH B 673 O HOH B 699 2.17 REMARK 500 O HOH B 520 O HOH B 596 2.17 REMARK 500 O HOH B 614 O HOH B 644 2.18 REMARK 500 O HOH A 687 O HOH A 743 2.18 REMARK 500 O HOH A 477 O HOH A 728 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 459 O HOH B 562 4545 2.12 REMARK 500 OD1 ASP B 25 O HOH A 502 4445 2.15 REMARK 500 O HOH A 608 O HOH B 527 4545 2.17 REMARK 500 O HOH A 532 O HOH A 541 4545 2.18 REMARK 500 N ASP B 25 O HOH B 559 3544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 63 -56.22 -130.16 REMARK 500 THR A 81 -110.31 -121.33 REMARK 500 ARG A 204 -5.05 75.52 REMARK 500 ALA A 214 -134.30 -98.75 REMARK 500 LYS B 63 -56.69 -124.40 REMARK 500 THR B 81 -104.72 -102.87 REMARK 500 TYR B 213 35.16 -145.25 REMARK 500 ALA B 214 -119.57 -108.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 52 OG REMARK 620 2 SER A 54 OG 89.8 REMARK 620 3 THR A 127 OG1 91.8 168.6 REMARK 620 4 HOH A 401 O 93.5 88.1 103.1 REMARK 620 5 HOH A 408 O 171.4 96.5 83.3 80.8 REMARK 620 6 HOH A 523 O 80.9 87.7 81.4 173.1 105.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 85 OH REMARK 620 2 GLU A 95 OE1 135.0 REMARK 620 3 HOH A 551 O 127.2 88.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HQF RELATED DB: PDB REMARK 900 RELATED ID: 4HQK RELATED DB: PDB REMARK 900 RELATED ID: 4HQL RELATED DB: PDB REMARK 900 RELATED ID: 4HQN RELATED DB: PDB DBREF 4HQO A 25 283 UNP Q9TVF0 Q9TVF0_PLAVI 25 283 DBREF 4HQO B 25 283 UNP Q9TVF0 Q9TVF0_PLAVI 25 283 SEQADV 4HQO GLN A 42 UNP Q9TVF0 SER 42 ENGINEERED MUTATION SEQADV 4HQO SER A 91 UNP Q9TVF0 ASN 91 ENGINEERED MUTATION SEQADV 4HQO SER A 128 UNP Q9TVF0 ASN 128 ENGINEERED MUTATION SEQADV 4HQO ARG A 180 UNP Q9TVF0 SER 180 ENGINEERED MUTATION SEQADV 4HQO HIS A 284 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS A 285 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS A 286 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS A 287 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS A 288 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS A 289 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO ALA A 290 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO GLN B 42 UNP Q9TVF0 SER 42 ENGINEERED MUTATION SEQADV 4HQO SER B 91 UNP Q9TVF0 ASN 91 ENGINEERED MUTATION SEQADV 4HQO SER B 128 UNP Q9TVF0 ASN 128 ENGINEERED MUTATION SEQADV 4HQO ARG B 180 UNP Q9TVF0 SER 180 ENGINEERED MUTATION SEQADV 4HQO HIS B 284 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS B 285 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS B 286 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS B 287 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS B 288 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO HIS B 289 UNP Q9TVF0 EXPRESSION TAG SEQADV 4HQO ALA B 290 UNP Q9TVF0 EXPRESSION TAG SEQRES 1 A 266 ASP GLU LYS VAL VAL ASP GLU VAL LYS TYR SER GLU GLU SEQRES 2 A 266 VAL CYS ASN GLU GLN VAL ASP LEU TYR LEU LEU VAL ASP SEQRES 3 A 266 GLY SER GLY SER ILE GLY TYR PRO ASN TRP ILE THR LYS SEQRES 4 A 266 VAL ILE PRO MET LEU ASN GLY LEU ILE ASN SER LEU SER SEQRES 5 A 266 LEU SER ARG ASP THR ILE ASN LEU TYR MET ASN LEU PHE SEQRES 6 A 266 GLY SER TYR THR THR GLU LEU ILE ARG LEU GLY SER GLY SEQRES 7 A 266 GLN SER ILE ASP LYS ARG GLN ALA LEU SER LYS VAL THR SEQRES 8 A 266 GLU LEU ARG LYS THR TYR THR PRO TYR GLY THR THR SER SEQRES 9 A 266 MET THR ALA ALA LEU ASP GLU VAL GLN LYS HIS LEU ASN SEQRES 10 A 266 ASP ARG VAL ASN ARG GLU LYS ALA ILE GLN LEU VAL ILE SEQRES 11 A 266 LEU MET THR ASP GLY VAL PRO ASN SER LYS TYR ARG ALA SEQRES 12 A 266 LEU GLU VAL ALA ASN LYS LEU LYS GLN ARG ASN VAL ARG SEQRES 13 A 266 LEU ALA VAL ILE GLY ILE GLY GLN GLY ILE ASN HIS GLN SEQRES 14 A 266 PHE ASN ARG LEU ILE ALA GLY CYS ARG PRO ARG GLU PRO SEQRES 15 A 266 ASN CYS LYS PHE TYR SER TYR ALA ASP TRP ASN GLU ALA SEQRES 16 A 266 VAL ALA LEU ILE LYS PRO PHE ILE ALA LYS VAL CYS THR SEQRES 17 A 266 GLU VAL GLU ARG VAL ALA ASN CYS GLY PRO TRP ASP PRO SEQRES 18 A 266 TRP THR ALA CYS SER VAL THR CYS GLY ARG GLY THR HIS SEQRES 19 A 266 SER ARG SER ARG PRO SER LEU HIS GLU LYS CYS THR THR SEQRES 20 A 266 HIS MET VAL SER GLU CYS GLU GLU GLY GLU CYS PRO HIS SEQRES 21 A 266 HIS HIS HIS HIS HIS ALA SEQRES 1 B 266 ASP GLU LYS VAL VAL ASP GLU VAL LYS TYR SER GLU GLU SEQRES 2 B 266 VAL CYS ASN GLU GLN VAL ASP LEU TYR LEU LEU VAL ASP SEQRES 3 B 266 GLY SER GLY SER ILE GLY TYR PRO ASN TRP ILE THR LYS SEQRES 4 B 266 VAL ILE PRO MET LEU ASN GLY LEU ILE ASN SER LEU SER SEQRES 5 B 266 LEU SER ARG ASP THR ILE ASN LEU TYR MET ASN LEU PHE SEQRES 6 B 266 GLY SER TYR THR THR GLU LEU ILE ARG LEU GLY SER GLY SEQRES 7 B 266 GLN SER ILE ASP LYS ARG GLN ALA LEU SER LYS VAL THR SEQRES 8 B 266 GLU LEU ARG LYS THR TYR THR PRO TYR GLY THR THR SER SEQRES 9 B 266 MET THR ALA ALA LEU ASP GLU VAL GLN LYS HIS LEU ASN SEQRES 10 B 266 ASP ARG VAL ASN ARG GLU LYS ALA ILE GLN LEU VAL ILE SEQRES 11 B 266 LEU MET THR ASP GLY VAL PRO ASN SER LYS TYR ARG ALA SEQRES 12 B 266 LEU GLU VAL ALA ASN LYS LEU LYS GLN ARG ASN VAL ARG SEQRES 13 B 266 LEU ALA VAL ILE GLY ILE GLY GLN GLY ILE ASN HIS GLN SEQRES 14 B 266 PHE ASN ARG LEU ILE ALA GLY CYS ARG PRO ARG GLU PRO SEQRES 15 B 266 ASN CYS LYS PHE TYR SER TYR ALA ASP TRP ASN GLU ALA SEQRES 16 B 266 VAL ALA LEU ILE LYS PRO PHE ILE ALA LYS VAL CYS THR SEQRES 17 B 266 GLU VAL GLU ARG VAL ALA ASN CYS GLY PRO TRP ASP PRO SEQRES 18 B 266 TRP THR ALA CYS SER VAL THR CYS GLY ARG GLY THR HIS SEQRES 19 B 266 SER ARG SER ARG PRO SER LEU HIS GLU LYS CYS THR THR SEQRES 20 B 266 HIS MET VAL SER GLU CYS GLU GLU GLY GLU CYS PRO HIS SEQRES 21 B 266 HIS HIS HIS HIS HIS ALA MODRES 4HQO THR B 252 THR GLYCOSYLATION SITE MODRES 4HQO THR A 252 THR GLYCOSYLATION SITE HET FUC C 1 10 HET BGC C 2 11 HET FUC D 1 10 HET BGC D 2 11 HET MG A 301 1 HET CL A 304 1 HET NA A 305 1 HET CL B 303 1 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 BGC 2(C6 H12 O6) FORMUL 5 MG MG 2+ FORMUL 6 CL 2(CL 1-) FORMUL 7 NA NA 1+ FORMUL 9 HOH *647(H2 O) HELIX 1 1 GLY A 56 LYS A 63 1 8 HELIX 2 2 LYS A 63 SER A 74 1 12 HELIX 3 3 SER A 101 ASP A 106 1 6 HELIX 4 4 ASP A 106 TYR A 121 1 16 HELIX 5 5 SER A 128 ASP A 142 1 15 HELIX 6 6 SER A 163 ARG A 177 1 15 HELIX 7 7 ASN A 191 GLY A 200 1 10 HELIX 8 8 ASP A 215 ALA A 228 1 14 HELIX 9 9 GLY B 56 LYS B 63 1 8 HELIX 10 10 LYS B 63 LEU B 75 1 13 HELIX 11 11 SER B 101 ASP B 106 1 6 HELIX 12 12 ASP B 106 TYR B 121 1 16 HELIX 13 13 SER B 128 ASP B 142 1 15 HELIX 14 14 SER B 163 ARG B 177 1 15 HELIX 15 15 ASN B 191 GLY B 200 1 10 HELIX 16 16 ASP B 215 ALA B 228 1 14 SHEET 1 A 4 GLU A 31 CYS A 39 0 SHEET 2 A 4 CYS A 231 ASN A 239 -1 O ARG A 236 N TYR A 34 SHEET 3 A 4 GLU B 31 ASN B 40 1 O CYS B 39 N CYS A 231 SHEET 4 A 4 VAL B 230 ASN B 239 -1 O VAL B 234 N GLU B 36 SHEET 1 B 6 THR A 93 ILE A 97 0 SHEET 2 B 6 ILE A 82 PHE A 89 -1 N LEU A 88 O THR A 94 SHEET 3 B 6 VAL A 43 ASP A 50 1 N VAL A 49 O ASN A 87 SHEET 4 B 6 ILE A 150 THR A 157 1 O ILE A 150 N ASP A 44 SHEET 5 B 6 ARG A 180 GLY A 185 1 O ARG A 180 N VAL A 153 SHEET 6 B 6 TYR A 211 SER A 212 1 O SER A 212 N GLY A 185 SHEET 1 C 2 GLY A 254 SER A 261 0 SHEET 2 C 2 HIS A 272 GLU A 279 -1 O SER A 275 N HIS A 258 SHEET 1 D 6 THR B 93 ILE B 97 0 SHEET 2 D 6 ILE B 82 PHE B 89 -1 N MET B 86 O LEU B 96 SHEET 3 D 6 VAL B 43 ASP B 50 1 N LEU B 47 O TYR B 85 SHEET 4 D 6 ILE B 150 THR B 157 1 O ILE B 150 N ASP B 44 SHEET 5 D 6 ARG B 180 GLY B 185 1 O ARG B 180 N VAL B 153 SHEET 6 D 6 TYR B 211 SER B 212 1 O SER B 212 N GLY B 185 SHEET 1 E 2 ARG B 255 SER B 261 0 SHEET 2 E 2 HIS B 272 GLU B 278 -1 O CYS B 277 N GLY B 256 SSBOND 1 CYS A 39 CYS A 231 1555 1555 2.05 SSBOND 2 CYS A 201 CYS A 208 1555 1555 2.04 SSBOND 3 CYS A 240 CYS A 269 1555 1555 2.04 SSBOND 4 CYS A 249 CYS A 277 1555 1555 2.04 SSBOND 5 CYS A 253 CYS A 282 1555 1555 2.04 SSBOND 6 CYS B 39 CYS B 231 1555 1555 2.05 SSBOND 7 CYS B 201 CYS B 208 1555 1555 2.04 SSBOND 8 CYS B 240 CYS B 269 1555 1555 2.05 SSBOND 9 CYS B 249 CYS B 277 1555 1555 2.06 SSBOND 10 CYS B 253 CYS B 282 1555 1555 2.04 LINK OG1 THR A 252 C1 FUC C 1 1555 1555 1.50 LINK OG1 THR B 252 C1 FUC D 1 1555 1555 1.49 LINK O3 FUC C 1 C1 BGC C 2 1555 1555 1.50 LINK O3 FUC D 1 C1 BGC D 2 1555 1555 1.50 LINK OG SER A 52 MG MG A 301 1555 1555 2.29 LINK OG SER A 54 MG MG A 301 1555 1555 2.25 LINK OH TYR A 85 NA NA A 305 1555 1555 2.29 LINK OE1 GLU A 95 NA NA A 305 1555 1555 2.19 LINK OG1 THR A 127 MG MG A 301 1555 1555 2.20 LINK MG MG A 301 O HOH A 401 1555 1555 2.18 LINK MG MG A 301 O HOH A 408 1555 1555 2.13 LINK MG MG A 301 O HOH A 523 1555 1555 2.16 LINK NA NA A 305 O HOH A 551 1555 1555 3.12 CRYST1 56.294 100.474 158.547 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006307 0.00000