HEADER TRANSFERASE 26-OCT-12 4HR2 TITLE STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE (NDK) FROM BURKHOLDERIA TITLE 2 THAILANDENSIS BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDK, NDP KINASE, NUCLEOSIDE-2-P KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: NDK, BTH_I2231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4HR2 1 REMARK SEQADV REVDAT 1 07-NOV-12 4HR2 0 JRNL AUTH M.C.CLIFTON,J.A.ABENDROTH JRNL TITL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE (NDK) FROM JRNL TITL 2 BURKHOLDERIA THAILANDENSIS BOUND TO ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 27787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.772 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2266 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2125 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3079 ; 1.413 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4869 ; 0.784 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 5.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;33.090 ;23.592 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;13.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.255 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2568 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 520 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7202 18.9914 4.4848 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0774 REMARK 3 T33: 0.0608 T12: 0.0088 REMARK 3 T13: 0.0229 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.9303 L22: 0.7067 REMARK 3 L33: 0.7751 L12: -0.0101 REMARK 3 L13: -0.1006 L23: 0.2210 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.1217 S13: -0.1423 REMARK 3 S21: 0.0840 S22: -0.0008 S23: 0.0422 REMARK 3 S31: 0.0869 S32: 0.0753 S33: 0.0571 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8319 20.0976 16.1945 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1500 REMARK 3 T33: 0.0313 T12: -0.0172 REMARK 3 T13: 0.0425 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 6.1386 L22: 4.8901 REMARK 3 L33: 4.4204 L12: -0.3306 REMARK 3 L13: 0.2077 L23: -0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.4257 S13: -0.2162 REMARK 3 S21: 0.4076 S22: -0.0046 S23: 0.2203 REMARK 3 S31: 0.1661 S32: -0.1668 S33: -0.0364 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1728 18.2011 4.1507 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0837 REMARK 3 T33: 0.0307 T12: 0.0056 REMARK 3 T13: 0.0031 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.2176 L22: 1.0972 REMARK 3 L33: 0.9984 L12: -0.1528 REMARK 3 L13: -0.9243 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: -0.1686 S13: -0.2068 REMARK 3 S21: 0.0169 S22: 0.0525 S23: -0.0579 REMARK 3 S31: 0.0440 S32: 0.0982 S33: 0.0585 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2697 39.4511 -6.3288 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.0390 REMARK 3 T33: 0.0493 T12: -0.0289 REMARK 3 T13: 0.0155 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.9682 L22: 0.6149 REMARK 3 L33: 1.1501 L12: 0.0488 REMARK 3 L13: -0.4086 L23: 0.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.0127 S13: 0.0578 REMARK 3 S21: -0.0732 S22: 0.0161 S23: 0.0041 REMARK 3 S31: -0.2531 S32: 0.0737 S33: -0.0686 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7657 51.4380 -1.6367 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.0356 REMARK 3 T33: 0.1624 T12: 0.0228 REMARK 3 T13: 0.0544 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 10.6815 L22: 14.0441 REMARK 3 L33: 6.7532 L12: 5.3539 REMARK 3 L13: 3.3029 L23: 1.5639 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.4230 S13: 0.9022 REMARK 3 S21: -0.2615 S22: -0.0739 S23: -0.0525 REMARK 3 S31: -0.4319 S32: -0.0682 S33: 0.1167 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9046 39.7411 -7.9461 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0176 REMARK 3 T33: 0.0511 T12: 0.0111 REMARK 3 T13: 0.0228 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0850 L22: 1.7948 REMARK 3 L33: 1.6460 L12: 0.3581 REMARK 3 L13: -0.0986 L23: 0.5494 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: 0.0272 S13: 0.1222 REMARK 3 S21: -0.0105 S22: 0.0586 S23: -0.0332 REMARK 3 S31: -0.1775 S32: 0.0326 S33: -0.0954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4HR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.427 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 4EK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUTHA.00438.A.A1 PS01186 AT 42.64 REMARK 280 MG/ML, 1.5 M AMMONIUM SULFATE, 0.1 M BIS-TRIS PROPANE, PH 7.0, REMARK 280 CRYOPROTECTANT: 15% ETHYLENE GLYCOL, 1MM ADP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.09500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.54750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.64250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.09500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.64250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.54750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 781 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 789 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 841 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LEU A 84 CG CD1 CD2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LEU B 3 CG CD1 CD2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 815 O HOH B 815 7554 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 -46.38 75.46 REMARK 500 ALA B 115 -42.29 72.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DUT RELATED DB: PDB REMARK 900 RELATED ID: 4EK2 RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-BUTHA.00438.A RELATED DB: TARGETTRACK DBREF 4HR2 A 1 141 UNP Q2SWE7 NDK_BURTA 1 141 DBREF 4HR2 B 1 141 UNP Q2SWE7 NDK_BURTA 1 141 SEQADV 4HR2 GLY A -3 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 PRO A -2 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 GLY A -1 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 SER A 0 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 GLY B -3 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 PRO B -2 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 GLY B -1 UNP Q2SWE7 EXPRESSION TAG SEQADV 4HR2 SER B 0 UNP Q2SWE7 EXPRESSION TAG SEQRES 1 A 145 GLY PRO GLY SER MET ALA LEU GLU ARG THR LEU SER ILE SEQRES 2 A 145 ILE LYS PRO ASP ALA VAL ALA LYS ASN VAL ILE GLY GLN SEQRES 3 A 145 ILE TYR SER ARG PHE GLU ASN ALA GLY LEU LYS ILE VAL SEQRES 4 A 145 ALA ALA ARG MET ALA HIS LEU SER ARG ALA ASP ALA GLU SEQRES 5 A 145 LYS PHE TYR ALA VAL HIS ALA GLU ARG PRO PHE PHE LYS SEQRES 6 A 145 ASP LEU VAL GLU PHE MET ILE SER GLY PRO VAL MET ILE SEQRES 7 A 145 GLN VAL LEU GLU GLY GLU ASP ALA ILE LEU LYS ASN ARG SEQRES 8 A 145 ASP LEU MET GLY ALA THR ASP PRO LYS LYS ALA GLU LYS SEQRES 9 A 145 GLY THR ILE ARG ALA ASP PHE ALA ASP SER ILE ASP ALA SEQRES 10 A 145 ASN ALA VAL HIS GLY SER ASP ALA PRO GLU THR ALA ARG SEQRES 11 A 145 VAL GLU ILE ALA PHE PHE PHE PRO GLU MET ASN VAL TYR SEQRES 12 A 145 SER ARG SEQRES 1 B 145 GLY PRO GLY SER MET ALA LEU GLU ARG THR LEU SER ILE SEQRES 2 B 145 ILE LYS PRO ASP ALA VAL ALA LYS ASN VAL ILE GLY GLN SEQRES 3 B 145 ILE TYR SER ARG PHE GLU ASN ALA GLY LEU LYS ILE VAL SEQRES 4 B 145 ALA ALA ARG MET ALA HIS LEU SER ARG ALA ASP ALA GLU SEQRES 5 B 145 LYS PHE TYR ALA VAL HIS ALA GLU ARG PRO PHE PHE LYS SEQRES 6 B 145 ASP LEU VAL GLU PHE MET ILE SER GLY PRO VAL MET ILE SEQRES 7 B 145 GLN VAL LEU GLU GLY GLU ASP ALA ILE LEU LYS ASN ARG SEQRES 8 B 145 ASP LEU MET GLY ALA THR ASP PRO LYS LYS ALA GLU LYS SEQRES 9 B 145 GLY THR ILE ARG ALA ASP PHE ALA ASP SER ILE ASP ALA SEQRES 10 B 145 ASN ALA VAL HIS GLY SER ASP ALA PRO GLU THR ALA ARG SEQRES 11 B 145 VAL GLU ILE ALA PHE PHE PHE PRO GLU MET ASN VAL TYR SEQRES 12 B 145 SER ARG HET ADP A 601 27 HET ADP B 601 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 HOH *308(H2 O) HELIX 1 1 LYS A 11 LYS A 17 1 7 HELIX 2 2 VAL A 19 ALA A 30 1 12 HELIX 3 3 SER A 43 TYR A 51 1 9 HELIX 4 4 ALA A 52 ALA A 55 5 4 HELIX 5 5 PHE A 59 ILE A 68 1 10 HELIX 6 6 ASP A 81 GLY A 91 1 11 HELIX 7 7 THR A 102 ALA A 108 1 7 HELIX 8 8 ALA A 121 PHE A 133 1 13 HELIX 9 9 PRO A 134 VAL A 138 5 5 HELIX 10 10 LYS B 11 LYS B 17 1 7 HELIX 11 11 VAL B 19 ALA B 30 1 12 HELIX 12 12 SER B 43 TYR B 51 1 9 HELIX 13 13 ALA B 52 ALA B 55 5 4 HELIX 14 14 PHE B 59 ILE B 68 1 10 HELIX 15 15 ASP B 81 GLY B 91 1 11 HELIX 16 16 THR B 102 ALA B 108 1 7 HELIX 17 17 SER B 110 ASN B 114 5 5 HELIX 18 18 ALA B 121 PHE B 133 1 13 HELIX 19 19 PRO B 134 VAL B 138 5 5 SHEET 1 A 4 LYS A 33 ALA A 40 0 SHEET 2 A 4 VAL A 72 GLU A 80 -1 O VAL A 72 N ALA A 40 SHEET 3 A 4 LEU A 3 ILE A 10 -1 N GLU A 4 O GLY A 79 SHEET 4 A 4 VAL A 116 GLY A 118 -1 O HIS A 117 N ILE A 9 SHEET 1 B 4 LYS B 33 ALA B 40 0 SHEET 2 B 4 VAL B 72 GLU B 78 -1 O VAL B 72 N ALA B 40 SHEET 3 B 4 ARG B 5 ILE B 10 -1 N ILE B 10 O MET B 73 SHEET 4 B 4 VAL B 116 GLY B 118 -1 O HIS B 117 N ILE B 9 SITE 1 AC1 18 LYS A 11 HIS A 54 PHE A 59 LEU A 63 SITE 2 AC1 18 ARG A 87 THR A 93 ARG A 104 ILE A 111 SITE 3 AC1 18 ASN A 114 HOH A 715 HOH A 731 HOH A 738 SITE 4 AC1 18 HOH A 760 HOH A 772 HOH A 805 HOH A 815 SITE 5 AC1 18 HOH A 839 HOH A 848 SITE 1 AC2 15 ALA A 2 LEU A 3 LYS B 11 TYR B 51 SITE 2 AC2 15 HIS B 54 PHE B 59 LEU B 63 ARG B 104 SITE 3 AC2 15 ILE B 111 ASN B 114 HIS B 117 GLY B 118 SITE 4 AC2 15 HOH B 780 HOH B 785 HOH B 787 CRYST1 91.240 91.240 90.190 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011088 0.00000