HEADER OXIDOREDUCTASE 26-OCT-12 4HR3 TITLE STRUCTURE OF A PUTATIVE ACYL-COA DEHYDROGENASE FROM MYCOBACTERIUM TITLE 2 ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: ATCC 19977 / DSM 44196; SOURCE 5 GENE: MAB_0255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, KEYWDS 3 DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 28-FEB-24 4HR3 1 REMARK SEQADV REVDAT 2 22-APR-15 4HR3 1 JRNL REVDAT 1 14-NOV-12 4HR3 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 51307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 547 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3253 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3102 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4458 ; 1.302 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7122 ; 0.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 5.183 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;30.098 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;11.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3746 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 736 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8128 56.1192 42.4767 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0606 REMARK 3 T33: 0.0327 T12: -0.0130 REMARK 3 T13: 0.0236 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.1777 L22: 0.2260 REMARK 3 L33: 0.6196 L12: -0.1052 REMARK 3 L13: 0.6063 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.1155 S13: -0.0300 REMARK 3 S21: -0.0309 S22: 0.0680 S23: -0.0215 REMARK 3 S31: -0.0639 S32: 0.1102 S33: -0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9432 32.4825 40.9183 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0436 REMARK 3 T33: 0.0451 T12: 0.0105 REMARK 3 T13: 0.0182 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.5824 L22: 0.8217 REMARK 3 L33: 0.3296 L12: -0.1299 REMARK 3 L13: -0.0631 L23: 0.1355 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0662 S13: -0.0541 REMARK 3 S21: -0.0027 S22: 0.0232 S23: -0.0786 REMARK 3 S31: 0.0335 S32: 0.0369 S33: -0.0135 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 409 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9898 54.3161 59.5455 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: 0.0406 REMARK 3 T33: 0.0284 T12: 0.0055 REMARK 3 T13: 0.0067 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.3004 L22: 0.5377 REMARK 3 L33: 0.3378 L12: -0.1587 REMARK 3 L13: 0.1021 L23: -0.1962 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.0267 S13: -0.0041 REMARK 3 S21: -0.0236 S22: -0.0094 S23: -0.0052 REMARK 3 S31: 0.0208 S32: 0.0279 S33: 0.0293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYABA.00309.A.A1.PS01029 AT 53.09 REMARK 280 MG/ML,0.1M BIS-TRIS HCL PH 5.5, 200MM NACL, 25% PEG3350, REMARK 280 CRYOPROTECTANT: 15% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.66500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.66500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.33000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 137.10000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 107.33000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 137.10000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 833 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 888 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 980 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 410 REMARK 465 ASP A 411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 HIS A 199 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 797 O HOH A 935 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 194 -73.22 -111.79 REMARK 500 TYR A 201 -5.59 80.21 REMARK 500 ALA A 251 -55.13 73.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYABA.00309.A RELATED DB: TARGETTRACK DBREF 4HR3 A 1 411 UNP B1MFF5 B1MFF5_MYCA9 1 411 SEQADV 4HR3 GLY A -3 UNP B1MFF5 EXPRESSION TAG SEQADV 4HR3 PRO A -2 UNP B1MFF5 EXPRESSION TAG SEQADV 4HR3 GLY A -1 UNP B1MFF5 EXPRESSION TAG SEQADV 4HR3 SER A 0 UNP B1MFF5 EXPRESSION TAG SEQRES 1 A 415 GLY PRO GLY SER MET ASP PHE ALA PRO SER ALA ARG ALA SEQRES 2 A 415 ALA GLU LEU ILE ALA ALA VAL ARG GLU PHE ILE ASP ALA SEQRES 3 A 415 GLU VAL MET PRO VAL GLU ARG ALA VAL LEU ALA HIS HIS SEQRES 4 A 415 ASP GLU LEU LEU GLY ALA ARG ALA GLY THR THR ALA GLU SEQRES 5 A 415 LEU TRP HIS VAL PRO PRO GLU LEU ASP SER LEU LYS ALA SEQRES 6 A 415 LYS ALA ARG ALA ALA GLY LEU TRP ASN LEU PHE LEU PRO SEQRES 7 A 415 ASP PRO GLU LEU GLY GLY GLY LEU SER ASN SER GLU TYR SEQRES 8 A 415 ALA PRO LEU ALA GLU GLN MET GLY ARG SER LEU PHE ALA SEQRES 9 A 415 PRO THR VAL PHE ASN CYS ASN ALA PRO ASP SER GLY ASN SEQRES 10 A 415 MET GLU VAL LEU HIS ARG TYR GLY SER GLN GLU GLN LYS SEQRES 11 A 415 GLU VAL TRP LEU GLU PRO LEU LEU GLU GLY ASP ILE ARG SEQRES 12 A 415 SER ALA PHE CYS MET THR GLU PRO ASP VAL ALA SER SER SEQRES 13 A 415 ASP ALA THR ASN MET ALA ALA THR ALA VAL VAL GLU GLY SEQRES 14 A 415 ASP GLU VAL VAL ILE ASN GLY ARG LYS TRP TRP SER THR SEQRES 15 A 415 GLY VAL GLY HIS PRO ASP CYS LYS VAL ILE ILE PHE MET SEQRES 16 A 415 GLY LEU THR ASP PRO ASN ALA HIS ARG TYR ALA ARG HIS SEQRES 17 A 415 SER MET VAL LEU VAL PRO MET ASP THR PRO GLY ILE THR SEQRES 18 A 415 VAL GLU ARG MET LEU PRO THR MET GLY PHE TYR ASP GLU SEQRES 19 A 415 PRO GLY GLY HIS GLY VAL VAL SER PHE ASP ASN VAL ARG SEQRES 20 A 415 LEU PRO ALA ASP ALA PHE ILE ALA GLY PRO GLY LYS GLY SEQRES 21 A 415 PHE GLU ILE ALA GLN GLY ARG LEU GLY PRO GLY ARG VAL SEQRES 22 A 415 HIS HIS ALA MET ARG LEU ILE GLY LEU ALA GLU VAL ALA SEQRES 23 A 415 LEU GLU HIS ALA CYS ARG ARG GLY LEU ASP ARG THR ALA SEQRES 24 A 415 PHE GLY LYS PRO LEU VAL ASN LEU GLY GLY ASN ARG GLU SEQRES 25 A 415 ARG ILE ALA ASP ALA ARG ILE ALA ILE ASN GLN THR ARG SEQRES 26 A 415 LEU LEU VAL LEU HIS ALA ALA TRP LEU LEU ASP THR VAL SEQRES 27 A 415 GLY ILE MET GLY ALA LEU SER ALA VAL SER GLU ILE LYS SEQRES 28 A 415 VAL ALA ALA PRO ASN MET ALA GLN GLN VAL ILE ASP MET SEQRES 29 A 415 ALA ILE GLN ILE HIS GLY GLY GLY GLY LEU SER ASN ASP SEQRES 30 A 415 PHE PRO LEU ALA ALA ALA TRP VAL ASN ALA ARG ALA LEU SEQRES 31 A 415 ARG LEU ALA ASP GLY PRO ASP GLU VAL HIS ARG GLY VAL SEQRES 32 A 415 VAL ALA ARG ILE GLU LEU ALA LYS TYR ALA ASN ASP HET FAD A 501 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *547(H2 O) HELIX 1 1 SER A 6 GLU A 23 1 18 HELIX 2 2 GLU A 23 ALA A 41 1 19 HELIX 3 3 THR A 46 HIS A 51 5 6 HELIX 4 4 PRO A 54 ALA A 66 1 13 HELIX 5 5 SER A 83 GLY A 95 1 13 HELIX 6 6 PHE A 99 PHE A 104 1 6 HELIX 7 7 PRO A 109 GLY A 121 1 13 HELIX 8 8 SER A 122 TRP A 129 1 8 HELIX 9 9 TRP A 129 GLU A 135 1 7 HELIX 10 10 ASP A 153 MET A 157 5 5 HELIX 11 11 ASP A 247 PHE A 249 5 3 HELIX 12 12 LYS A 255 LEU A 264 1 10 HELIX 13 13 GLY A 265 ARG A 293 1 29 HELIX 14 14 VAL A 301 LEU A 303 5 3 HELIX 15 15 GLY A 305 VAL A 334 1 30 HELIX 16 16 GLY A 335 GLY A 338 5 4 HELIX 17 17 ALA A 339 HIS A 365 1 27 HELIX 18 18 GLY A 366 SER A 371 5 6 HELIX 19 19 PRO A 375 LEU A 386 1 12 HELIX 20 20 PRO A 392 LYS A 407 1 16 SHEET 1 A 3 ARG A 139 CYS A 143 0 SHEET 2 A 3 CYS A 185 LEU A 193 1 O ILE A 189 N CYS A 143 SHEET 3 A 3 HIS A 204 PRO A 210 -1 O VAL A 209 N ILE A 188 SHEET 1 B 4 THR A 160 GLU A 164 0 SHEET 2 B 4 GLU A 167 THR A 178 -1 O VAL A 169 N VAL A 162 SHEET 3 B 4 HIS A 234 PRO A 245 -1 O VAL A 242 N ILE A 170 SHEET 4 B 4 ILE A 216 MET A 221 -1 N THR A 217 O SER A 238 SHEET 1 C 2 THR A 294 ALA A 295 0 SHEET 2 C 2 LYS A 298 PRO A 299 -1 O LYS A 298 N ALA A 295 CISPEP 1 ALA A 108 PRO A 109 0 2.20 CISPEP 2 GLU A 230 PRO A 231 0 6.29 SITE 1 AC1 35 PHE A 142 MET A 144 THR A 145 VAL A 149 SITE 2 AC1 35 ALA A 150 SER A 151 SER A 152 TRP A 176 SITE 3 AC1 35 THR A 178 HIS A 234 ARG A 293 PHE A 296 SITE 4 AC1 35 LEU A 300 LEU A 303 ASN A 306 GLN A 363 SITE 5 AC1 35 ILE A 364 GLY A 366 GLY A 367 ALA A 385 SITE 6 AC1 35 LEU A 388 ASP A 390 PRO A 392 GLU A 394 SITE 7 AC1 35 VAL A 395 HOH A 605 HOH A 607 HOH A 618 SITE 8 AC1 35 HOH A 627 HOH A 630 HOH A 700 HOH A 860 SITE 9 AC1 35 HOH A 948 HOH A 954 HOH A1080 CRYST1 79.950 107.330 137.100 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007294 0.00000