HEADER PLANT PROTEIN 30-OCT-12 4HSD TITLE CRYSTAL STRUCTURE OF A NEW FORM OF PLANT LECTIN FROM CICER ARIETINUM TITLE 2 AT 2.45 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CICER ARIETINUM; SOURCE 3 ORGANISM_COMMON: GARBANZO; SOURCE 4 ORGANISM_TAXID: 3827 KEYWDS LECTIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,A.SINGH,A.BHUSHAN,S.DEY,S.SHARMA,T.P.SINGH REVDAT 2 08-NOV-23 4HSD 1 REMARK LINK REVDAT 1 14-NOV-12 4HSD 0 JRNL AUTH S.KUMAR,A.SINGH,A.BHUSHAN,S.DEY,S.SHARMA,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF A NEW FORM OF PLANT LECTIN FROM CICER JRNL TITL 2 ARIETINUM AT 2.45 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 16980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -0.84000 REMARK 3 B12 (A**2) : 0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.962 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.345 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.823 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.792 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3688 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4978 ; 1.974 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 4.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;30.824 ;23.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;18.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2874 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2220 ; 0.808 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3562 ; 1.360 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 1.693 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 2.436 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 69.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3V6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE TETRA HYDRATE, REMARK 280 0.1M SODIUN CACODYLATE TRIHYDRATE, 20% PEG 8000, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 THR B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 80 CD GLU B 80 OE1 -0.077 REMARK 500 GLU B 80 CD GLU B 80 OE2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 58 CB - CG1 - CD1 ANGL. DEV. = 27.1 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 205 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ILE A 206 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 ILE A 206 CB - CG1 - CD1 ANGL. DEV. = 37.3 DEGREES REMARK 500 ILE B 154 CB - CG1 - CD1 ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 5 -161.90 -114.75 REMARK 500 ASN A 23 -121.06 48.86 REMARK 500 ALA A 32 84.01 23.59 REMARK 500 LYS A 39 140.22 -179.45 REMARK 500 THR A 70 -97.82 -110.12 REMARK 500 TYR A 72 -134.67 57.54 REMARK 500 ASN A 73 51.48 -103.74 REMARK 500 TYR A 79 119.59 -168.58 REMARK 500 GLU A 80 -135.04 46.31 REMARK 500 ALA A 89 77.26 45.65 REMARK 500 LYS A 130 41.11 -99.83 REMARK 500 ILE A 206 145.59 134.23 REMARK 500 ASN B 23 -147.41 48.07 REMARK 500 ASP B 24 21.23 -76.66 REMARK 500 ALA B 32 78.01 32.04 REMARK 500 THR B 70 -84.31 -104.16 REMARK 500 TYR B 72 -136.69 65.55 REMARK 500 GLU B 80 -122.13 55.47 REMARK 500 ALA B 89 73.52 42.52 REMARK 500 SER B 92 -152.33 -143.38 REMARK 500 ASP B 93 7.71 -155.74 REMARK 500 LYS B 94 51.48 -103.33 REMARK 500 PRO B 200 107.90 -52.95 REMARK 500 THR B 203 94.25 -69.94 REMARK 500 ILE B 206 110.96 59.87 REMARK 500 TYR B 216 -10.09 -142.46 REMARK 500 SER B 219 2.51 -63.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 7 OD1 REMARK 620 2 ASN A 7 O 71.1 REMARK 620 3 ASP A 65 O 93.4 62.2 REMARK 620 4 ASP A 121 O 160.4 91.1 70.4 REMARK 620 5 ASP A 174 O 97.6 62.3 115.5 80.5 REMARK 620 6 HOH A 442 O 101.0 162.0 135.5 98.4 104.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 7 OD1 REMARK 620 2 ASN B 7 O 62.7 REMARK 620 3 ASP B 65 O 74.7 57.5 REMARK 620 4 ASP B 121 O 132.3 72.1 68.5 REMARK 620 5 ASP B 174 O 96.3 52.7 104.2 65.7 REMARK 620 6 HOH B 475 O 101.6 141.5 156.9 124.0 98.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V6N RELATED DB: PDB DBREF 4HSD A 1 227 UNP G1K3R9 G1K3R9_CICAR 1 227 DBREF 4HSD B 1 227 UNP G1K3R9 G1K3R9_CICAR 1 227 SEQRES 1 A 227 THR LYS THR GLY TYR ILE ASN ALA ALA PHE ARG SER SER SEQRES 2 A 227 ARG ASN ASN GLU ALA TYR LEU PHE ILE ASN ASP LYS TYR SEQRES 3 A 227 VAL LEU LEU ASP TYR ALA PRO GLY THR SER ASN ASP LYS SEQRES 4 A 227 VAL LEU TYR GLY PRO SER PHE VAL ARG ASP GLY TYR LYS SEQRES 5 A 227 SER LEU ALA LYS THR ILE PHE GLY THR TYR GLY ILE ASP SEQRES 6 A 227 CYS SER PHE ASP THR GLU TYR ASN GLU ALA PHE ILE PHE SEQRES 7 A 227 TYR GLU ASN PHE CYS ALA ARG ILE ASP TYR ALA PRO HIS SEQRES 8 A 227 SER ASP LYS ASP LYS ILE ILE SER GLY PRO LYS LYS ILE SEQRES 9 A 227 ALA ASP MET PHE PRO PHE PHE LYS GLY THR VAL PHE GLU SEQRES 10 A 227 ASN GLY ILE ASP ALA ALA PHE ARG SER THR LYS GLY LYS SEQRES 11 A 227 GLU VAL TYR LEU PHE LYS GLY ASP LYS TYR ALA ARG ILE SEQRES 12 A 227 ASP TYR LEU THR ASN ARG LEU VAL GLN ASN ILE LYS SER SEQRES 13 A 227 ILE SER ASP GLY PHE PRO CYS LEU ARG GLY THR ILE PHE SEQRES 14 A 227 GLU ALA GLY MET ASP SER ALA PHE ALA SER HIS LYS THR SEQRES 15 A 227 ASN GLU ALA TYR LEU PHE LYS GLY GLU TYR TYR ALA ARG SEQRES 16 A 227 ILE ASN PHE THR PRO GLY SER THR ASN ASP ILE MET GLY SEQRES 17 A 227 GLY VAL LYS LYS THR LEU ASP TYR TRP PRO SER LEU ARG SEQRES 18 A 227 GLY ILE ILE PRO LEU GLU SEQRES 1 B 227 THR LYS THR GLY TYR ILE ASN ALA ALA PHE ARG SER SER SEQRES 2 B 227 ARG ASN ASN GLU ALA TYR LEU PHE ILE ASN ASP LYS TYR SEQRES 3 B 227 VAL LEU LEU ASP TYR ALA PRO GLY THR SER ASN ASP LYS SEQRES 4 B 227 VAL LEU TYR GLY PRO SER PHE VAL ARG ASP GLY TYR LYS SEQRES 5 B 227 SER LEU ALA LYS THR ILE PHE GLY THR TYR GLY ILE ASP SEQRES 6 B 227 CYS SER PHE ASP THR GLU TYR ASN GLU ALA PHE ILE PHE SEQRES 7 B 227 TYR GLU ASN PHE CYS ALA ARG ILE ASP TYR ALA PRO HIS SEQRES 8 B 227 SER ASP LYS ASP LYS ILE ILE SER GLY PRO LYS LYS ILE SEQRES 9 B 227 ALA ASP MET PHE PRO PHE PHE LYS GLY THR VAL PHE GLU SEQRES 10 B 227 ASN GLY ILE ASP ALA ALA PHE ARG SER THR LYS GLY LYS SEQRES 11 B 227 GLU VAL TYR LEU PHE LYS GLY ASP LYS TYR ALA ARG ILE SEQRES 12 B 227 ASP TYR LEU THR ASN ARG LEU VAL GLN ASN ILE LYS SER SEQRES 13 B 227 ILE SER ASP GLY PHE PRO CYS LEU ARG GLY THR ILE PHE SEQRES 14 B 227 GLU ALA GLY MET ASP SER ALA PHE ALA SER HIS LYS THR SEQRES 15 B 227 ASN GLU ALA TYR LEU PHE LYS GLY GLU TYR TYR ALA ARG SEQRES 16 B 227 ILE ASN PHE THR PRO GLY SER THR ASN ASP ILE MET GLY SEQRES 17 B 227 GLY VAL LYS LYS THR LEU ASP TYR TRP PRO SER LEU ARG SEQRES 18 B 227 GLY ILE ILE PRO LEU GLU HET NA A 301 1 HET NA B 301 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *222(H2 O) HELIX 1 1 VAL A 47 TYR A 51 1 5 HELIX 2 2 LYS A 52 ALA A 55 5 4 HELIX 3 3 THR A 57 GLY A 63 1 7 HELIX 4 4 ILE A 104 PHE A 108 1 5 HELIX 5 5 PRO A 109 LYS A 112 5 4 HELIX 6 6 THR A 114 ASN A 118 5 5 HELIX 7 7 ILE A 157 PHE A 161 1 5 HELIX 8 8 PRO A 162 ARG A 165 5 4 HELIX 9 9 THR A 167 ALA A 171 5 5 HELIX 10 10 THR A 213 TRP A 217 1 5 HELIX 11 11 PRO A 218 ARG A 221 5 4 HELIX 12 12 VAL B 47 TYR B 51 1 5 HELIX 13 13 LYS B 52 ALA B 55 5 4 HELIX 14 14 THR B 57 TYR B 62 1 6 HELIX 15 15 ILE B 104 PHE B 108 1 5 HELIX 16 16 PRO B 109 LYS B 112 5 4 HELIX 17 17 ILE B 157 PHE B 161 1 5 HELIX 18 18 PRO B 162 ARG B 165 5 4 HELIX 19 19 TRP B 217 ARG B 221 5 5 SHEET 1 A 4 ILE A 6 ARG A 11 0 SHEET 2 A 4 GLU A 17 ILE A 22 -1 O PHE A 21 N ALA A 8 SHEET 3 A 4 LYS A 25 ASP A 30 -1 O LYS A 25 N ILE A 22 SHEET 4 A 4 LYS A 39 PHE A 46 -1 O LYS A 39 N ASP A 30 SHEET 1 B 4 CYS A 66 ASP A 69 0 SHEET 2 B 4 GLU A 74 TYR A 79 -1 O PHE A 78 N CYS A 66 SHEET 3 B 4 PHE A 82 ASP A 87 -1 O ALA A 84 N ILE A 77 SHEET 4 B 4 LYS A 96 LYS A 103 -1 O SER A 99 N ARG A 85 SHEET 1 C 4 ALA A 122 ARG A 125 0 SHEET 2 C 4 GLU A 131 LYS A 136 -1 O PHE A 135 N ALA A 122 SHEET 3 C 4 LYS A 139 ASP A 144 -1 O ILE A 143 N VAL A 132 SHEET 4 C 4 ARG A 149 LEU A 150 -1 O ARG A 149 N ASP A 144 SHEET 1 D 4 ALA A 122 ARG A 125 0 SHEET 2 D 4 GLU A 131 LYS A 136 -1 O PHE A 135 N ALA A 122 SHEET 3 D 4 LYS A 139 ASP A 144 -1 O ILE A 143 N VAL A 132 SHEET 4 D 4 LYS A 155 SER A 156 -1 O LYS A 155 N TYR A 140 SHEET 1 E 4 SER A 175 ALA A 178 0 SHEET 2 E 4 GLU A 184 LYS A 189 -1 O TYR A 186 N PHE A 177 SHEET 3 E 4 TYR A 192 ASN A 197 -1 O TYR A 192 N LYS A 189 SHEET 4 E 4 LYS A 211 LYS A 212 -1 O LYS A 211 N TYR A 193 SHEET 1 F 4 ILE B 6 ARG B 11 0 SHEET 2 F 4 GLU B 17 ILE B 22 -1 O PHE B 21 N ASN B 7 SHEET 3 F 4 LYS B 25 ASP B 30 -1 O LEU B 29 N ALA B 18 SHEET 4 F 4 LYS B 39 PHE B 46 -1 O TYR B 42 N LEU B 28 SHEET 1 G 4 CYS B 66 ASP B 69 0 SHEET 2 G 4 GLU B 74 TYR B 79 -1 O PHE B 76 N PHE B 68 SHEET 3 G 4 PHE B 82 ASP B 87 -1 O PHE B 82 N TYR B 79 SHEET 4 G 4 LYS B 96 LYS B 103 -1 O LYS B 96 N ASP B 87 SHEET 1 H 4 ALA B 122 ARG B 125 0 SHEET 2 H 4 GLU B 131 LYS B 136 -1 O TYR B 133 N PHE B 124 SHEET 3 H 4 LYS B 139 ASP B 144 -1 O LYS B 139 N LYS B 136 SHEET 4 H 4 LYS B 155 SER B 156 -1 O LYS B 155 N TYR B 140 SHEET 1 I 4 SER B 175 ALA B 178 0 SHEET 2 I 4 GLU B 184 LYS B 189 -1 O PHE B 188 N SER B 175 SHEET 3 I 4 TYR B 192 ASN B 197 -1 O TYR B 192 N LYS B 189 SHEET 4 I 4 LYS B 211 LYS B 212 -1 O LYS B 211 N TYR B 193 LINK OD1 ASN A 7 NA NA A 301 1555 1555 2.64 LINK O ASN A 7 NA NA A 301 1555 1555 2.70 LINK O ASP A 65 NA NA A 301 1555 1555 2.55 LINK O ASP A 121 NA NA A 301 1555 1555 2.57 LINK O ASP A 174 NA NA A 301 1555 1555 2.51 LINK NA NA A 301 O HOH A 442 1555 1555 3.09 LINK OD1 ASN B 7 NA NA B 301 1555 1555 2.50 LINK O ASN B 7 NA NA B 301 1555 1555 3.09 LINK O ASP B 65 NA NA B 301 1555 1555 2.65 LINK O ASP B 121 NA NA B 301 1555 1555 2.78 LINK O ASP B 174 NA NA B 301 1555 1555 3.00 LINK NA NA B 301 O HOH B 475 1555 1555 2.68 CISPEP 1 GLY A 43 PRO A 44 0 7.23 CISPEP 2 GLY A 100 PRO A 101 0 2.85 CISPEP 3 ILE A 206 MET A 207 0 4.65 CISPEP 4 ILE A 224 PRO A 225 0 0.14 CISPEP 5 GLY B 43 PRO B 44 0 2.68 CISPEP 6 GLY B 100 PRO B 101 0 1.59 CISPEP 7 ILE B 206 MET B 207 0 21.27 CISPEP 8 MET B 207 GLY B 208 0 -4.50 CISPEP 9 ILE B 224 PRO B 225 0 -0.89 SITE 1 AC1 5 ASN A 7 ASP A 65 ASP A 121 ASP A 174 SITE 2 AC1 5 HOH A 442 SITE 1 AC2 5 ASN B 7 ASP B 65 ASP B 121 ASP B 174 SITE 2 AC2 5 HOH B 475 CRYST1 80.481 80.481 69.177 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012425 0.007174 0.000000 0.00000 SCALE2 0.000000 0.014347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014456 0.00000