HEADER CELL ADHESION 30-OCT-12 4HSS TITLE STRUCTURE OF THE FULL-LENGTH MAJOR PILIN SPAD FROM CORYNEBACTERIUM TITLE 2 DIPHTHERIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FIMBRIAL SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAINS D1-D3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 257309; SOURCE 4 STRAIN: ATCC 700971 / NCTC 13129 / BIOTYPE GRAVIS; SOURCE 5 GENE: DIP0235; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS CNAA/CNAB FOLDED DOMAINS, MAJOR PILIN POLYMER, HOMOPOLYMER, KEYWDS 2 ISOPEPTIDE BONDING BETWEEN LYS AND ASN SIDECHAINS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR N.G.PATERSON,H.J.KANG,E.N.BAKER REVDAT 4 20-SEP-23 4HSS 1 REMARK SEQADV LINK REVDAT 3 25-JUN-14 4HSS 1 JRNL REVDAT 2 14-MAY-14 4HSS 1 JRNL REVDAT 1 13-NOV-13 4HSS 0 JRNL AUTH H.J.KANG,N.G.PATERSON,C.U.KIM,M.MIDDLEDITCH,C.CHANG, JRNL AUTH 2 H.TON-THAT,E.N.BAKER JRNL TITL A SLOW-FORMING ISOPEPTIDE BOND IN THE STRUCTURE OF THE MAJOR JRNL TITL 2 PILIN SPAD FROM CORYNEBACTERIUM DIPHTHERIAE HAS IMPLICATIONS JRNL TITL 3 FOR PILUS ASSEMBLY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1190 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24816089 JRNL DOI 10.1107/S1399004714001400 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1405 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2902 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2429 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2783 REMARK 3 BIN R VALUE (WORKING SET) : 0.2374 REMARK 3 BIN FREE R VALUE : 0.3726 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6209 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.43990 REMARK 3 B22 (A**2) : -5.00540 REMARK 3 B33 (A**2) : 21.44540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.311 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6314 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8533 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2988 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 187 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 892 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6314 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 860 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6844 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4HSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 600, 0.2M IMIDAZOLE-MALATE, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.41400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 217.91950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 217.91950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.41400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SPAD SUBUNITS COVALENTLY LINKED BY SORTASE-CATALYSED REMARK 300 ISOPEPTIDE BOND BETWEEN C-TERMINAL SORTASE MOTIF THR CARBOXYL AND REMARK 300 EPSILON AMINO GROUP OF LYS 179 IN D1 OF NEXT MONOMER. CHAINS A AND REMARK 300 B ARE ARRANGED IN THE PREDICTED POLYMER ORIENTATION AND THIS REMARK 300 CONTINUES THROUGHOUT THE CRYSTAL VIA SYMMETRY OPERATIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 30 REMARK 465 ILE A 31 REMARK 465 ALA A 32 REMARK 465 GLU A 33 REMARK 465 GLU A 34 REMARK 465 GLY A 35 REMARK 465 THR A 36 REMARK 465 GLN A 37 REMARK 465 VAL A 38 REMARK 465 GLN A 39 REMARK 465 GLN A 40 REMARK 465 THR A 41 REMARK 465 GLU A 437 REMARK 465 GLY A 438 REMARK 465 ASP A 439 REMARK 465 GLY B 25 REMARK 465 PRO B 26 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 VAL B 29 REMARK 465 ALA B 30 REMARK 465 ILE B 31 REMARK 465 ALA B 32 REMARK 465 GLU B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 THR B 36 REMARK 465 GLN B 37 REMARK 465 VAL B 38 REMARK 465 GLN B 39 REMARK 465 GLN B 40 REMARK 465 THR B 41 REMARK 465 GLU B 63 REMARK 465 SER B 64 REMARK 465 GLU B 65 REMARK 465 LYS B 66 REMARK 465 ARG B 67 REMARK 465 ALA B 68 REMARK 465 THR B 69 REMARK 465 GLY B 70 REMARK 465 LYS B 71 REMARK 465 GLU B 72 REMARK 465 MET B 73 REMARK 465 ASP B 74 REMARK 465 ASP B 75 REMARK 465 VAL B 76 REMARK 465 GLY B 212 REMARK 465 LYS B 213 REMARK 465 ASP B 214 REMARK 465 LYS B 435 REMARK 465 PHE B 436 REMARK 465 GLY B 454 REMARK 465 THR B 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 187 OD1 ASN A 299 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 124 -60.97 -122.06 REMARK 500 ASN A 126 33.20 -97.73 REMARK 500 PHE A 220 116.52 -164.72 REMARK 500 GLN A 233 -73.59 -103.71 REMARK 500 ASP A 311 -6.29 67.00 REMARK 500 SER B 124 -56.73 -124.31 REMARK 500 ASN B 126 33.91 -98.04 REMARK 500 TYR B 177 78.25 -119.95 REMARK 500 GLN B 233 -84.13 -103.62 REMARK 500 LYS B 279 98.88 -68.68 REMARK 500 ASP B 311 -7.15 67.39 REMARK 500 ASP B 439 -173.52 -65.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 430 O REMARK 620 2 GLU A 432 O 97.6 REMARK 620 3 ASP A 440 O 79.3 89.1 REMARK 620 4 THR A 443 O 85.6 159.3 71.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 430 O REMARK 620 2 ASP B 440 O 63.3 REMARK 620 3 THR B 443 O 83.2 59.8 REMARK 620 4 HOH B 674 O 167.7 122.9 91.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HSQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RESIDUES 180-455 OF SAME PROTEIN FOLLOWING REMARK 900 LIMITED PROTEOLYSIS WITH TRYPSIN. DBREF 4HSS A 26 455 UNP Q6NK05 Q6NK05_CORDI 26 455 DBREF 4HSS B 26 455 UNP Q6NK05 Q6NK05_CORDI 26 455 SEQADV 4HSS GLY A 25 UNP Q6NK05 EXPRESSION TAG SEQADV 4HSS GLY B 25 UNP Q6NK05 EXPRESSION TAG SEQRES 1 A 431 GLY PRO GLY ALA VAL ALA ILE ALA GLU GLU GLY THR GLN SEQRES 2 A 431 VAL GLN GLN THR GLN ARG ALA ASN ILE ASP PHE GLU ARG SEQRES 3 A 431 LYS GLY SER LEU THR LEU HIS LYS LYS LYS GLY ALA GLU SEQRES 4 A 431 SER GLU LYS ARG ALA THR GLY LYS GLU MET ASP ASP VAL SEQRES 5 A 431 ALA GLY GLU PRO LEU ASN GLY VAL THR PHE LYS ILE THR SEQRES 6 A 431 LYS LEU ASN PHE ASP LEU GLN ASN GLY ASP TRP ALA LYS SEQRES 7 A 431 PHE PRO LYS THR ALA ALA ASP ALA LYS GLY HIS GLU THR SEQRES 8 A 431 SER THR THR LYS GLU VAL GLU THR SER GLY ASN GLY THR SEQRES 9 A 431 ALA VAL PHE ASP ASN LEU ASP LEU GLY ILE TYR LEU VAL SEQRES 10 A 431 GLU GLU THR LYS ALA PRO ASP GLY ILE VAL THR GLY ALA SEQRES 11 A 431 PRO PHE ILE VAL SER ILE PRO MET VAL ASN GLU ALA SER SEQRES 12 A 431 ASP ALA TRP ASN TYR ASN VAL VAL ALA TYR PRO LYS ASN SEQRES 13 A 431 THR GLU THR LYS THR GLU LYS THR VAL LYS ASP ALA ASP SEQRES 14 A 431 GLN ASN ILE GLN ASP ALA TYR THR TYR THR ILE LYS ALA SEQRES 15 A 431 ASP ALA PRO THR TRP GLY LYS ASP LYS LYS LEU THR ALA SEQRES 16 A 431 PHE ARG PHE GLU ASP GLU LEU ASP LYS ARG LEU ASP PHE SEQRES 17 A 431 GLN LYS VAL THR GLU VAL LYS ALA GLY ASP THR VAL LEU SEQRES 18 A 431 GLY THR SER ASP TYR THR VAL ASN ASP PRO ALA THR ASP SEQRES 19 A 431 GLY ASN LYS LEU VAL VAL THR LEU THR ASP GLU GLY LEU SEQRES 20 A 431 LYS LYS VAL LYS SER GLY ASP LYS MET SER LEU THR PHE SEQRES 21 A 431 GLU VAL LYS ARG LYS GLU VAL GLY ASN THR THR GLU LEU SEQRES 22 A 431 LYS ASN ARG ALA ASP VAL ILE PHE ASN ASN PRO ASN THR SEQRES 23 A 431 ASP LYS GLU VAL LYS ASN LYS THR ASN GLU VAL VAL THR SEQRES 24 A 431 TYR HIS GLY LYS LEU LYS VAL VAL LYS LYS ASP GLY LYS SEQRES 25 A 431 GLU ALA GLY LYS VAL LEU LYS GLY ALA GLU PHE GLU LEU SEQRES 26 A 431 TYR GLN CYS THR SER ALA ALA VAL LEU GLY LYS GLY PRO SEQRES 27 A 431 LEU THR VAL ASP GLY VAL LYS LYS TRP THR THR GLY ASP SEQRES 28 A 431 ASP GLY THR PHE THR ILE ASP GLY LEU HIS VAL THR ASP SEQRES 29 A 431 PHE GLU ASP GLY LYS GLU ALA ALA PRO ALA THR LYS LYS SEQRES 30 A 431 PHE CYS LEU LYS GLU THR LYS ALA PRO ALA GLY TYR ALA SEQRES 31 A 431 LEU PRO ASP PRO ASN VAL THR GLU ILE GLU PHE THR ARG SEQRES 32 A 431 ALA LYS ILE SER GLU LYS ASP LYS PHE GLU GLY ASP ASP SEQRES 33 A 431 GLU VAL THR LEU VAL SER GLU ILE LYS ASN ILE LYS GLN SEQRES 34 A 431 GLY THR SEQRES 1 B 431 GLY PRO GLY ALA VAL ALA ILE ALA GLU GLU GLY THR GLN SEQRES 2 B 431 VAL GLN GLN THR GLN ARG ALA ASN ILE ASP PHE GLU ARG SEQRES 3 B 431 LYS GLY SER LEU THR LEU HIS LYS LYS LYS GLY ALA GLU SEQRES 4 B 431 SER GLU LYS ARG ALA THR GLY LYS GLU MET ASP ASP VAL SEQRES 5 B 431 ALA GLY GLU PRO LEU ASN GLY VAL THR PHE LYS ILE THR SEQRES 6 B 431 LYS LEU ASN PHE ASP LEU GLN ASN GLY ASP TRP ALA LYS SEQRES 7 B 431 PHE PRO LYS THR ALA ALA ASP ALA LYS GLY HIS GLU THR SEQRES 8 B 431 SER THR THR LYS GLU VAL GLU THR SER GLY ASN GLY THR SEQRES 9 B 431 ALA VAL PHE ASP ASN LEU ASP LEU GLY ILE TYR LEU VAL SEQRES 10 B 431 GLU GLU THR LYS ALA PRO ASP GLY ILE VAL THR GLY ALA SEQRES 11 B 431 PRO PHE ILE VAL SER ILE PRO MET VAL ASN GLU ALA SER SEQRES 12 B 431 ASP ALA TRP ASN TYR ASN VAL VAL ALA TYR PRO LYS ASN SEQRES 13 B 431 THR GLU THR LYS THR GLU LYS THR VAL LYS ASP ALA ASP SEQRES 14 B 431 GLN ASN ILE GLN ASP ALA TYR THR TYR THR ILE LYS ALA SEQRES 15 B 431 ASP ALA PRO THR TRP GLY LYS ASP LYS LYS LEU THR ALA SEQRES 16 B 431 PHE ARG PHE GLU ASP GLU LEU ASP LYS ARG LEU ASP PHE SEQRES 17 B 431 GLN LYS VAL THR GLU VAL LYS ALA GLY ASP THR VAL LEU SEQRES 18 B 431 GLY THR SER ASP TYR THR VAL ASN ASP PRO ALA THR ASP SEQRES 19 B 431 GLY ASN LYS LEU VAL VAL THR LEU THR ASP GLU GLY LEU SEQRES 20 B 431 LYS LYS VAL LYS SER GLY ASP LYS MET SER LEU THR PHE SEQRES 21 B 431 GLU VAL LYS ARG LYS GLU VAL GLY ASN THR THR GLU LEU SEQRES 22 B 431 LYS ASN ARG ALA ASP VAL ILE PHE ASN ASN PRO ASN THR SEQRES 23 B 431 ASP LYS GLU VAL LYS ASN LYS THR ASN GLU VAL VAL THR SEQRES 24 B 431 TYR HIS GLY LYS LEU LYS VAL VAL LYS LYS ASP GLY LYS SEQRES 25 B 431 GLU ALA GLY LYS VAL LEU LYS GLY ALA GLU PHE GLU LEU SEQRES 26 B 431 TYR GLN CYS THR SER ALA ALA VAL LEU GLY LYS GLY PRO SEQRES 27 B 431 LEU THR VAL ASP GLY VAL LYS LYS TRP THR THR GLY ASP SEQRES 28 B 431 ASP GLY THR PHE THR ILE ASP GLY LEU HIS VAL THR ASP SEQRES 29 B 431 PHE GLU ASP GLY LYS GLU ALA ALA PRO ALA THR LYS LYS SEQRES 30 B 431 PHE CYS LEU LYS GLU THR LYS ALA PRO ALA GLY TYR ALA SEQRES 31 B 431 LEU PRO ASP PRO ASN VAL THR GLU ILE GLU PHE THR ARG SEQRES 32 B 431 ALA LYS ILE SER GLU LYS ASP LYS PHE GLU GLY ASP ASP SEQRES 33 B 431 GLU VAL THR LEU VAL SER GLU ILE LYS ASN ILE LYS GLN SEQRES 34 B 431 GLY THR HET CA A 501 1 HET CA B 501 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *280(H2 O) HELIX 1 1 ASP A 99 PHE A 103 5 5 HELIX 2 2 THR A 106 LYS A 111 1 6 HELIX 3 3 ASP A 254 ASP A 258 5 5 HELIX 4 4 THR A 267 LYS A 273 1 7 HELIX 5 5 THR A 426 GLU A 432 1 7 HELIX 6 6 ASP B 99 PHE B 103 5 5 HELIX 7 7 ASP B 254 ASP B 258 5 5 HELIX 8 8 THR B 267 VAL B 274 1 8 HELIX 9 9 THR B 426 GLU B 432 1 7 SHEET 1 A 3 THR A 128 LEU A 134 0 SHEET 2 A 3 GLY A 52 HIS A 57 -1 N LEU A 54 O PHE A 131 SHEET 3 A 3 ASN A 173 ALA A 176 1 O ALA A 176 N HIS A 57 SHEET 1 B 4 GLU A 79 PRO A 80 0 SHEET 2 B 4 LYS A 59 LYS A 60 -1 N LYS A 60 O GLU A 79 SHEET 3 B 4 LYS A 179 GLU A 182 1 O ASN A 180 N LYS A 59 SHEET 4 B 4 ILE A 150 THR A 152 -1 N VAL A 151 O THR A 181 SHEET 1 C 4 GLU A 114 GLU A 122 0 SHEET 2 C 4 THR A 85 LEU A 91 -1 N PHE A 86 O VAL A 121 SHEET 3 C 4 GLY A 137 LYS A 145 -1 O GLU A 142 N LYS A 87 SHEET 4 C 4 PHE A 156 ILE A 160 -1 O PHE A 156 N VAL A 141 SHEET 1 D 5 THR A 185 LYS A 190 0 SHEET 2 D 5 ALA A 199 ASP A 207 -1 O LYS A 205 N GLU A 186 SHEET 3 D 5 LYS A 279 ARG A 288 -1 O MET A 280 N ALA A 206 SHEET 4 D 5 LEU A 230 ALA A 240 -1 N LYS A 234 O GLU A 285 SHEET 5 D 5 THR A 243 VAL A 244 -1 O THR A 243 N ALA A 240 SHEET 1 E 5 TYR A 250 VAL A 252 0 SHEET 2 E 5 LYS A 261 LEU A 266 -1 O THR A 265 N THR A 251 SHEET 3 E 5 PHE A 220 GLU A 225 -1 N ASP A 224 O LEU A 262 SHEET 4 E 5 ASP A 302 ASN A 306 -1 O ASP A 302 N GLU A 223 SHEET 5 E 5 GLU A 313 LYS A 317 -1 O VAL A 314 N PHE A 305 SHEET 1 F 3 GLU A 296 ASN A 299 0 SHEET 2 F 3 VAL A 321 ASP A 334 -1 O VAL A 321 N ASN A 299 SHEET 3 F 3 THR A 378 HIS A 385 -1 O ILE A 381 N LEU A 328 SHEET 1 G 3 GLU A 296 ASN A 299 0 SHEET 2 G 3 VAL A 321 ASP A 334 -1 O VAL A 321 N ASN A 299 SHEET 3 G 3 THR A 443 ASN A 450 1 O SER A 446 N LYS A 329 SHEET 1 H 3 VAL A 357 LEU A 358 0 SHEET 2 H 3 GLU A 346 SER A 354 -1 N THR A 353 O VAL A 357 SHEET 3 H 3 TRP A 371 THR A 372 -1 O TRP A 371 N PHE A 347 SHEET 1 I 4 VAL A 357 LEU A 358 0 SHEET 2 I 4 GLU A 346 SER A 354 -1 N THR A 353 O VAL A 357 SHEET 3 I 4 LYS A 401 LYS A 408 -1 O CYS A 403 N TYR A 350 SHEET 4 I 4 VAL A 420 ILE A 423 -1 O ILE A 423 N PHE A 402 SHEET 1 J 2 PHE A 389 GLU A 390 0 SHEET 2 J 2 LYS A 393 GLU A 394 -1 O LYS A 393 N GLU A 390 SHEET 1 K 3 THR B 128 LEU B 134 0 SHEET 2 K 3 GLY B 52 HIS B 57 -1 N LEU B 54 O PHE B 131 SHEET 3 K 3 ASN B 173 ALA B 176 1 O VAL B 174 N THR B 55 SHEET 1 L 4 GLU B 79 PRO B 80 0 SHEET 2 L 4 LYS B 59 LYS B 60 -1 N LYS B 60 O GLU B 79 SHEET 3 L 4 LYS B 179 GLU B 182 1 O ASN B 180 N LYS B 59 SHEET 4 L 4 ILE B 150 THR B 152 -1 N VAL B 151 O THR B 181 SHEET 1 M 4 GLU B 114 GLU B 122 0 SHEET 2 M 4 THR B 85 LEU B 91 -1 N PHE B 86 O VAL B 121 SHEET 3 M 4 GLY B 137 LYS B 145 -1 O GLU B 142 N LYS B 87 SHEET 4 M 4 PHE B 156 ILE B 160 -1 O PHE B 156 N VAL B 141 SHEET 1 N 5 THR B 185 LYS B 190 0 SHEET 2 N 5 ALA B 199 ASP B 207 -1 O THR B 201 N LYS B 190 SHEET 3 N 5 LYS B 279 ARG B 288 -1 O VAL B 286 N TYR B 200 SHEET 4 N 5 LEU B 230 ALA B 240 -1 N LYS B 234 O GLU B 285 SHEET 5 N 5 THR B 243 VAL B 244 -1 O THR B 243 N ALA B 240 SHEET 1 O 5 TYR B 250 VAL B 252 0 SHEET 2 O 5 LYS B 261 LEU B 266 -1 O THR B 265 N THR B 251 SHEET 3 O 5 ARG B 221 GLU B 225 -1 N ASP B 224 O LEU B 262 SHEET 4 O 5 ALA B 301 ASN B 306 -1 O ASP B 302 N GLU B 223 SHEET 5 O 5 GLU B 313 LYS B 317 -1 O VAL B 314 N PHE B 305 SHEET 1 P 3 GLU B 296 ASN B 299 0 SHEET 2 P 3 VAL B 321 ASP B 334 -1 O VAL B 321 N ASN B 299 SHEET 3 P 3 THR B 378 HIS B 385 -1 O ILE B 381 N LEU B 328 SHEET 1 Q 3 GLU B 296 ASN B 299 0 SHEET 2 Q 3 VAL B 321 ASP B 334 -1 O VAL B 321 N ASN B 299 SHEET 3 Q 3 THR B 443 ASN B 450 1 O SER B 446 N LYS B 329 SHEET 1 R 3 VAL B 357 LEU B 358 0 SHEET 2 R 3 GLU B 346 SER B 354 -1 N THR B 353 O VAL B 357 SHEET 3 R 3 TRP B 371 THR B 372 -1 O TRP B 371 N PHE B 347 SHEET 1 S 4 VAL B 357 LEU B 358 0 SHEET 2 S 4 GLU B 346 SER B 354 -1 N THR B 353 O VAL B 357 SHEET 3 S 4 LYS B 401 LYS B 408 -1 O CYS B 403 N TYR B 350 SHEET 4 S 4 VAL B 420 ILE B 423 -1 O ILE B 423 N PHE B 402 SHEET 1 T 2 PHE B 389 GLU B 390 0 SHEET 2 T 2 LYS B 393 GLU B 394 -1 O LYS B 393 N GLU B 390 SSBOND 1 CYS A 352 CYS A 403 1555 1555 2.06 SSBOND 2 CYS B 352 CYS B 403 1555 1555 2.05 LINK NZ LYS A 58 CG ASN A 180 1555 1555 1.33 LINK NZ LYS A 187 CG ASN A 299 1555 1555 1.33 LINK NZ LYS A 332 CG ASN A 450 1555 1555 1.29 LINK NZ LYS B 58 CG ASN B 180 1555 1555 1.31 LINK NZ LYS B 187 CG ASN B 299 1555 1555 1.34 LINK NZ LYS B 332 CG ASN B 450 1555 1555 1.27 LINK O ILE A 430 CA CA A 501 1555 1555 2.71 LINK O GLU A 432 CA CA A 501 1555 1555 2.34 LINK O ASP A 440 CA CA A 501 1555 1555 2.61 LINK O THR A 443 CA CA A 501 1555 1555 2.37 LINK O ILE B 430 CA CA B 501 1555 1555 2.55 LINK O ASP B 440 CA CA B 501 1555 1555 3.09 LINK O THR B 443 CA CA B 501 1555 1555 2.69 LINK CA CA B 501 O HOH B 674 1555 1555 3.13 CISPEP 1 ILE A 160 PRO A 161 0 1.43 CISPEP 2 GLY A 361 PRO A 362 0 0.50 CISPEP 3 ASP A 382 GLY A 383 0 4.89 CISPEP 4 ALA A 396 PRO A 397 0 -3.42 CISPEP 5 ASP A 417 PRO A 418 0 2.91 CISPEP 6 ILE B 160 PRO B 161 0 2.21 CISPEP 7 GLY B 361 PRO B 362 0 -0.01 CISPEP 8 ASP B 382 GLY B 383 0 5.71 CISPEP 9 ALA B 396 PRO B 397 0 -4.49 CISPEP 10 ASP B 417 PRO B 418 0 3.98 SITE 1 AC1 4 ILE A 430 GLU A 432 ASP A 440 THR A 443 SITE 1 AC2 5 LYS B 429 ILE B 430 GLU B 432 ASP B 440 SITE 2 AC2 5 THR B 443 CRYST1 32.828 56.791 435.839 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002294 0.00000