HEADER HYDROLASE 01-NOV-12 4HTJ TITLE CRYSTALLOGRAPHIC STRUCTURE OF THE MEMBRANE-PROXIMAL ECTODOMAIN OF THE TITLE 2 HUMAN RECEPTOR-TYPE PROTEIN-TYROSINE PHOSPHATASE PHOGRIN AT PH 4.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE N2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 502 - 599; COMPND 5 SYNONYM: R-PTP-N2, ISLET CELL AUTOANTIGEN-RELATED PROTEIN, IAR, COMPND 6 ICAAR, PHOGRIN; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRN2, KIAA0387; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOGRIN, IA-2BETA, PROTEIN-TYROSINE PHOSPHATASE, TRANSMEMBRANE KEYWDS 2 PROTEIN, DIABETES, AUTOIMMUNITY, GLYCOPROTEIN, RECEPTOR, HYDROLASE, KEYWDS 3 FERREDOXIN-LIKE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR M.E.NOGUERA,J.JAKONCIC,E.POSKUS,M.R.ERMACORA REVDAT 8 20-SEP-23 4HTJ 1 SEQADV REVDAT 7 15-NOV-17 4HTJ 1 REMARK REVDAT 6 18-MAR-15 4HTJ 1 JRNL REVDAT 5 24-JUL-13 4HTJ 1 JRNL REVDAT 4 20-MAR-13 4HTJ 1 JRNL REVDAT 3 30-JAN-13 4HTJ 1 JRNL REVDAT 2 19-DEC-12 4HTJ 1 JRNL REVDAT 1 28-NOV-12 4HTJ 0 JRNL AUTH M.E.NOGUERA,M.E.PRIMO,J.JAKONCIC,E.POSKUS,M.SOLIMENA, JRNL AUTH 2 M.R.ERMACORA JRNL TITL X-RAY STRUCTURE OF THE MATURE ECTODOMAIN OF PHOGRIN. JRNL REF J.STRUCT.FUNCT.GENOM. V. 16 1 2015 JRNL REFN ISSN 1345-711X JRNL PMID 25421040 JRNL DOI 10.1007/S10969-014-9191-0 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 9206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 692 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 939 ; 2.000 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 90 ; 6.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;32.522 ;25.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 125 ;16.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 114 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 516 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 510 A 515 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5080 -25.8540 -6.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.4371 T22: 0.3892 REMARK 3 T33: 0.1145 T12: -0.0029 REMARK 3 T13: 0.0070 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 14.2230 L22: 1.1900 REMARK 3 L33: 7.9534 L12: 4.0901 REMARK 3 L13: 2.6733 L23: 0.4624 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: -0.0824 S13: -0.6005 REMARK 3 S21: 0.0042 S22: -0.0473 S23: -0.1747 REMARK 3 S31: 0.5122 S32: 0.1201 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 516 A 520 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4960 -13.2080 -12.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.3351 REMARK 3 T33: 0.1558 T12: -0.0127 REMARK 3 T13: -0.0665 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 8.9144 L22: 6.5098 REMARK 3 L33: 17.3176 L12: -2.6287 REMARK 3 L13: 1.4619 L23: -3.7864 REMARK 3 S TENSOR REMARK 3 S11: -0.2579 S12: 0.0298 S13: 0.6378 REMARK 3 S21: 0.0846 S22: -0.4600 S23: -0.1423 REMARK 3 S31: -0.9464 S32: 0.2796 S33: 0.7180 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 521 A 525 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2590 -12.6440 -12.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.5086 T22: 0.3889 REMARK 3 T33: 0.2031 T12: -0.0710 REMARK 3 T13: -0.0723 T23: 0.1629 REMARK 3 L TENSOR REMARK 3 L11: 50.4701 L22: 0.9079 REMARK 3 L33: 46.2507 L12: 4.1808 REMARK 3 L13: 10.4355 L23: 5.8390 REMARK 3 S TENSOR REMARK 3 S11: -0.6931 S12: 2.1697 S13: 2.0061 REMARK 3 S21: -0.2873 S22: 0.3209 S23: 0.1641 REMARK 3 S31: -2.2493 S32: 1.6291 S33: 0.3722 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 526 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7500 -14.6870 -3.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.3919 T22: 0.4454 REMARK 3 T33: 0.2105 T12: 0.0345 REMARK 3 T13: -0.1152 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 8.1456 L22: 5.4407 REMARK 3 L33: 31.2516 L12: -1.0880 REMARK 3 L13: -0.7751 L23: 7.3987 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.2073 S13: 0.3611 REMARK 3 S21: 0.1911 S22: 0.4013 S23: -0.5282 REMARK 3 S31: 0.1001 S32: 1.6727 S33: -0.4130 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 539 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0210 -17.9240 6.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.4451 T22: 0.4596 REMARK 3 T33: 0.3073 T12: 0.0328 REMARK 3 T13: -0.1658 T23: -0.1199 REMARK 3 L TENSOR REMARK 3 L11: 23.5626 L22: 16.4248 REMARK 3 L33: 29.2804 L12: -18.9636 REMARK 3 L13: 17.2355 L23: -10.0580 REMARK 3 S TENSOR REMARK 3 S11: -0.2660 S12: -0.6130 S13: -0.0175 REMARK 3 S21: 0.0323 S22: 0.2092 S23: 0.2976 REMARK 3 S31: -0.1704 S32: -0.6300 S33: 0.0568 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 540 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0040 -22.1630 -0.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.3870 REMARK 3 T33: 0.1244 T12: -0.0225 REMARK 3 T13: -0.0277 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 32.7426 L22: 17.2444 REMARK 3 L33: 20.5550 L12: -2.5232 REMARK 3 L13: 14.6338 L23: 14.3284 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.0788 S13: 0.6886 REMARK 3 S21: -0.2773 S22: 0.1580 S23: -0.4716 REMARK 3 S31: -0.3062 S32: 0.1596 S33: -0.0605 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 546 A 551 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0170 -22.3680 -11.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.3775 REMARK 3 T33: 0.0878 T12: 0.0145 REMARK 3 T13: -0.0027 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 29.7294 L22: 8.1348 REMARK 3 L33: 20.8417 L12: -5.7604 REMARK 3 L13: 19.0886 L23: -3.5642 REMARK 3 S TENSOR REMARK 3 S11: 0.7332 S12: 0.8908 S13: -1.3671 REMARK 3 S21: -0.0228 S22: 0.0999 S23: 0.0391 REMARK 3 S31: 0.5503 S32: 1.0641 S33: -0.8332 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 552 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7320 -24.0120 -6.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.3786 T22: 0.3577 REMARK 3 T33: 0.1177 T12: -0.0117 REMARK 3 T13: -0.0347 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 24.9139 L22: 2.3595 REMARK 3 L33: 11.5508 L12: -7.2275 REMARK 3 L13: 14.4844 L23: -3.3083 REMARK 3 S TENSOR REMARK 3 S11: 0.4666 S12: -0.0541 S13: -0.3068 REMARK 3 S21: -0.0683 S22: 0.0000 S23: 0.0245 REMARK 3 S31: 0.3997 S32: -0.1371 S33: -0.4667 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 559 A 566 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6070 -28.2390 6.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.3292 T22: 0.3220 REMARK 3 T33: 0.1094 T12: 0.0035 REMARK 3 T13: -0.0141 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 14.8247 L22: 12.3141 REMARK 3 L33: 16.8799 L12: -5.1087 REMARK 3 L13: -0.8447 L23: 5.0128 REMARK 3 S TENSOR REMARK 3 S11: -0.1375 S12: -0.4131 S13: -1.0470 REMARK 3 S21: 0.3915 S22: 0.3698 S23: 0.5505 REMARK 3 S31: 0.3822 S32: -0.1486 S33: -0.2324 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 567 A 571 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3500 -27.6750 2.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.5842 T22: 0.5915 REMARK 3 T33: 0.3380 T12: -0.1733 REMARK 3 T13: 0.0788 T23: -0.1075 REMARK 3 L TENSOR REMARK 3 L11: 49.1328 L22: 1.2653 REMARK 3 L33: 48.6773 L12: 3.8994 REMARK 3 L13: 27.3409 L23: -3.4760 REMARK 3 S TENSOR REMARK 3 S11: 0.3238 S12: 0.1491 S13: -2.6538 REMARK 3 S21: -0.3829 S22: 0.3497 S23: -0.3583 REMARK 3 S31: 2.5441 S32: -1.6981 S33: -0.6734 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 572 A 577 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5430 -21.2280 5.9960 REMARK 3 T TENSOR REMARK 3 T11: 0.5698 T22: 0.8466 REMARK 3 T33: 0.1335 T12: 0.1470 REMARK 3 T13: 0.0036 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 15.8226 L22: 23.7088 REMARK 3 L33: 14.8799 L12: -1.4835 REMARK 3 L13: 1.9357 L23: 18.3835 REMARK 3 S TENSOR REMARK 3 S11: -0.2471 S12: -1.3882 S13: -0.8242 REMARK 3 S21: 1.2787 S22: 0.1968 S23: 0.2425 REMARK 3 S31: 0.8849 S32: -0.2065 S33: 0.0503 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 578 A 583 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4570 -11.9350 3.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.4012 T22: 0.5420 REMARK 3 T33: 0.0779 T12: 0.1542 REMARK 3 T13: -0.0421 T23: -0.1848 REMARK 3 L TENSOR REMARK 3 L11: 23.2142 L22: 16.0959 REMARK 3 L33: 28.9032 L12: -1.7987 REMARK 3 L13: 7.4155 L23: -5.3239 REMARK 3 S TENSOR REMARK 3 S11: -0.7194 S12: -2.3663 S13: 0.8739 REMARK 3 S21: 1.3137 S22: 0.3285 S23: 0.1923 REMARK 3 S31: -0.9327 S32: -1.1190 S33: 0.3908 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 584 A 589 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9750 -11.3610 -2.6860 REMARK 3 T TENSOR REMARK 3 T11: 0.6152 T22: 0.3789 REMARK 3 T33: 0.1186 T12: 0.0533 REMARK 3 T13: -0.1150 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: 23.0280 L22: 16.8209 REMARK 3 L33: 9.0275 L12: -2.3793 REMARK 3 L13: 8.2708 L23: 5.8326 REMARK 3 S TENSOR REMARK 3 S11: -0.6155 S12: -0.8259 S13: 1.0678 REMARK 3 S21: 0.1323 S22: -0.0224 S23: -0.0364 REMARK 3 S31: -0.8497 S32: -0.5997 S33: 0.6380 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 590 A 598 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0940 -29.2490 -6.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.3875 T22: 0.3970 REMARK 3 T33: 0.0863 T12: -0.0055 REMARK 3 T13: 0.0300 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.7411 L22: 17.6570 REMARK 3 L33: 5.3084 L12: -6.1515 REMARK 3 L13: -0.1926 L23: 0.6928 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: 0.3394 S13: -0.1033 REMARK 3 S21: 0.5050 S22: -0.3977 S23: -0.0272 REMARK 3 S31: 0.6024 S32: 0.0377 S33: 0.3099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QT7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 25 % W/V POLYETHYLENE GLYCOL 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.71567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.43133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.57350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 124.28917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.85783 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.71567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 99.43133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 124.28917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.57350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.85783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 501 REMARK 465 GLU A 502 REMARK 465 VAL A 503 REMARK 465 GLN A 504 REMARK 465 PRO A 505 REMARK 465 SER A 506 REMARK 465 GLU A 507 REMARK 465 GLU A 508 REMARK 465 GLU A 509 REMARK 465 LYS A 599 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 535 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 4HTJ A 501 599 UNP Q92932 PTPR2_HUMAN 501 599 SEQADV 4HTJ MET A 501 UNP Q92932 LEU 501 CONFLICT SEQRES 1 A 99 MET GLU VAL GLN PRO SER GLU GLU GLU ALA ARG GLY TYR SEQRES 2 A 99 ILE VAL THR ASP ARG ASP PRO LEU ARG PRO GLU GLU GLY SEQRES 3 A 99 ARG ARG LEU VAL GLU ASP VAL ALA ARG LEU LEU GLN VAL SEQRES 4 A 99 PRO SER SER ALA PHE ALA ASP VAL GLU VAL LEU GLY PRO SEQRES 5 A 99 ALA VAL THR PHE LYS VAL SER ALA ASN VAL GLN ASN VAL SEQRES 6 A 99 THR THR GLU ASP VAL GLU LYS ALA THR VAL ASP ASN LYS SEQRES 7 A 99 ASP LYS LEU GLU GLU THR SER GLY LEU LYS ILE LEU GLN SEQRES 8 A 99 THR GLY VAL GLY SER LYS SER LYS FORMUL 2 HOH *34(H2 O) HELIX 1 1 ARG A 522 LEU A 537 1 16 HELIX 2 2 PRO A 540 SER A 542 5 3 HELIX 3 3 THR A 566 ASN A 577 1 12 HELIX 4 4 ASN A 577 GLY A 586 1 10 SHEET 1 A 4 PHE A 544 LEU A 550 0 SHEET 2 A 4 ALA A 553 VAL A 558 -1 O THR A 555 N GLU A 548 SHEET 3 A 4 GLY A 512 THR A 516 -1 N GLY A 512 O PHE A 556 SHEET 4 A 4 ILE A 589 VAL A 594 -1 O LEU A 590 N VAL A 515 CISPEP 1 ASP A 519 PRO A 520 0 -3.67 CRYST1 54.742 54.742 149.147 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018268 0.010547 0.000000 0.00000 SCALE2 0.000000 0.021094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006705 0.00000