HEADER OXIDOREDUCTASE 02-NOV-12 4HU7 TITLE E. COLI THIOREDOXIN VARIANT WITH PRO76 AS SINGLE PROLINE RESIDUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: TRXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRX1P KEYWDS CISPROLINE, THIOREDOXIN FOLD, PROTEIN DISULFIDE OXIDOREDUCTASE KEYWDS 2 ACTIVITY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.GLOCKSHUBER,M.A.SCHARER,G.CAPITANI,M.RUBINI REVDAT 4 20-SEP-23 4HU7 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4HU7 1 REMARK REVDAT 2 03-JUL-13 4HU7 1 JRNL REVDAT 1 29-MAY-13 4HU7 0 JRNL AUTH M.RUBINI,M.A.SCHARER,G.CAPITANI,R.GLOCKSHUBER JRNL TITL (4R)- AND (4S)-FLUOROPROLINE IN THE CONSERVED CIS-PROLYL JRNL TITL 2 PEPTIDE BOND OF THE THIOREDOXIN FOLD: TERTIARY STRUCTURE JRNL TITL 3 CONTEXT DICTATES RING PUCKERING. JRNL REF CHEMBIOCHEM V. 14 1053 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23712956 JRNL DOI 10.1002/CBIC.201300178 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6115 - 2.5439 1.00 5864 151 0.1484 0.1908 REMARK 3 2 2.5439 - 2.0191 1.00 5812 149 0.1489 0.1687 REMARK 3 3 2.0191 - 1.7639 1.00 5766 148 0.1537 0.2059 REMARK 3 4 1.7639 - 1.6026 1.00 5754 148 0.1787 0.2105 REMARK 3 5 1.6026 - 1.4877 1.00 5743 147 0.2039 0.2379 REMARK 3 6 1.4877 - 1.4000 0.99 5713 147 0.2609 0.2665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1698 REMARK 3 ANGLE : 1.058 2309 REMARK 3 CHIRALITY : 0.074 271 REMARK 3 PLANARITY : 0.004 295 REMARK 3 DIHEDRAL : 12.860 608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5855 -8.6277 23.8661 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.0843 REMARK 3 T33: 0.1355 T12: -0.0052 REMARK 3 T13: 0.0057 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.1875 L22: 0.1490 REMARK 3 L33: 0.5006 L12: 0.1189 REMARK 3 L13: 0.1255 L23: 0.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.1270 S12: -0.0259 S13: -0.1663 REMARK 3 S21: 0.1962 S22: 0.0674 S23: -0.0118 REMARK 3 S31: -0.1038 S32: -0.1095 S33: 0.1002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5710 -1.5726 21.4816 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.0774 REMARK 3 T33: 0.1363 T12: -0.0052 REMARK 3 T13: -0.0099 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.1131 L22: 0.1597 REMARK 3 L33: 0.1685 L12: 0.0888 REMARK 3 L13: 0.0007 L23: -0.1278 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0591 S13: -0.0802 REMARK 3 S21: 0.0184 S22: -0.0625 S23: -0.1291 REMARK 3 S31: -0.0512 S32: 0.0605 S33: -0.1244 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8105 -4.5426 17.9421 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.0837 REMARK 3 T33: 0.0974 T12: -0.0108 REMARK 3 T13: 0.0011 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.1070 L22: 0.0994 REMARK 3 L33: 0.0628 L12: 0.0981 REMARK 3 L13: -0.0639 L23: -0.0836 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.0278 S13: -0.0457 REMARK 3 S21: 0.0498 S22: 0.0096 S23: -0.0277 REMARK 3 S31: 0.0992 S32: -0.0650 S33: -0.0210 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1797 6.5146 19.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: 0.0819 REMARK 3 T33: 0.0989 T12: 0.0016 REMARK 3 T13: -0.0055 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.1500 L22: 0.1270 REMARK 3 L33: 0.2237 L12: 0.0519 REMARK 3 L13: -0.0125 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0434 S13: 0.0019 REMARK 3 S21: 0.0395 S22: 0.0187 S23: 0.0215 REMARK 3 S31: -0.0406 S32: -0.0402 S33: 0.0838 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2211 5.7518 -2.1405 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.2697 REMARK 3 T33: 0.1044 T12: -0.0465 REMARK 3 T13: -0.0049 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.1128 L22: 0.2532 REMARK 3 L33: 0.0151 L12: -0.0043 REMARK 3 L13: 0.0036 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0600 S13: -0.0383 REMARK 3 S21: -0.1103 S22: 0.0132 S23: -0.0066 REMARK 3 S31: -0.1170 S32: 0.3366 S33: -0.0360 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7554 16.5435 5.7149 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.0977 REMARK 3 T33: 0.1068 T12: -0.0025 REMARK 3 T13: -0.0070 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.0333 L22: 0.1137 REMARK 3 L33: 0.0409 L12: -0.0379 REMARK 3 L13: -0.0097 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.0775 S13: 0.0608 REMARK 3 S21: -0.0716 S22: -0.0774 S23: -0.0405 REMARK 3 S31: -0.1641 S32: -0.0418 S33: -0.0328 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4361 7.7003 0.2648 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.1965 REMARK 3 T33: 0.1015 T12: -0.0571 REMARK 3 T13: 0.0059 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 0.2415 L22: 0.2584 REMARK 3 L33: 0.0315 L12: -0.1539 REMARK 3 L13: -0.0364 L23: -0.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.1167 S13: -0.0538 REMARK 3 S21: -0.1015 S22: -0.0792 S23: 0.0100 REMARK 3 S31: 0.0562 S32: 0.1394 S33: -0.0453 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6724 3.9940 8.2543 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1569 REMARK 3 T33: 0.0954 T12: -0.0035 REMARK 3 T13: 0.0023 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1320 L22: 0.2455 REMARK 3 L33: 0.0031 L12: -0.0934 REMARK 3 L13: -0.0202 L23: 0.0465 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: -0.0082 S13: -0.0128 REMARK 3 S21: 0.0067 S22: 0.0948 S23: 0.0162 REMARK 3 S31: 0.0489 S32: 0.2074 S33: -0.0187 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6965 16.4122 13.2792 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1028 REMARK 3 T33: 0.1531 T12: -0.0040 REMARK 3 T13: 0.0211 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.0167 L22: 0.0088 REMARK 3 L33: 0.0169 L12: 0.0093 REMARK 3 L13: 0.0050 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0203 S13: 0.1439 REMARK 3 S21: -0.0317 S22: 0.0232 S23: -0.0930 REMARK 3 S31: -0.0909 S32: 0.0762 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99986 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.108 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 2TRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM ACETIC ACID-NAOH, 2 MM CUCL2, 35 REMARK 280 % (V/V) MPD , PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.44000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 33.85000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 108 REMARK 465 SER B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 3 REMARK 465 ALA B 108 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 36 CD CE NZ REMARK 480 LYS A 52 CG CD CE NZ REMARK 480 LYS B 18 CD CE NZ REMARK 480 ASP B 47 CB CG OD1 OD2 REMARK 480 GLN B 50 CG CD OE1 NE2 REMARK 480 LYS B 52 CG CD CE NZ REMARK 480 LYS B 57 CD CE NZ REMARK 480 LYS B 69 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 410 O HOH A 418 2.10 REMARK 500 O HOH A 416 O HOH B 363 2.11 REMARK 500 O HOH A 363 O HOH B 343 2.15 REMARK 500 O ASN B 63 O HOH B 350 2.18 REMARK 500 O HOH B 353 O HOH B 370 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 16 -60.16 -123.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 1 N REMARK 620 2 ASP A 2 N 86.0 REMARK 620 3 ASP A 2 OD1 177.3 91.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 6 NE2 REMARK 620 2 GLN B 62 OE1 164.2 REMARK 620 3 HOH B 365 O 92.9 71.8 REMARK 620 4 HOH B 366 O 87.7 81.1 59.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HUA RELATED DB: PDB REMARK 900 RELATED ID: 4HU9 RELATED DB: PDB DBREF 4HU7 A 1 108 UNP P0AA25 THIO_ECOLI 2 109 DBREF 4HU7 B 1 108 UNP P0AA25 THIO_ECOLI 2 109 SEQADV 4HU7 ALA A 34 UNP P0AA25 PRO 35 ENGINEERED MUTATION SEQADV 4HU7 ALA A 40 UNP P0AA25 PRO 41 ENGINEERED MUTATION SEQADV 4HU7 ALA A 64 UNP P0AA25 PRO 65 ENGINEERED MUTATION SEQADV 4HU7 ALA A 68 UNP P0AA25 PRO 69 ENGINEERED MUTATION SEQADV 4HU7 ALA B 34 UNP P0AA25 PRO 35 ENGINEERED MUTATION SEQADV 4HU7 ALA B 40 UNP P0AA25 PRO 41 ENGINEERED MUTATION SEQADV 4HU7 ALA B 64 UNP P0AA25 PRO 65 ENGINEERED MUTATION SEQADV 4HU7 ALA B 68 UNP P0AA25 PRO 69 ENGINEERED MUTATION SEQRES 1 A 108 SER ASP LYS ILE ILE HIS LEU THR ASP ASP SER PHE ASP SEQRES 2 A 108 THR ASP VAL LEU LYS ALA ASP GLY ALA ILE LEU VAL ASP SEQRES 3 A 108 PHE TRP ALA GLU TRP CYS GLY ALA CYS LYS MET ILE ALA SEQRES 4 A 108 ALA ILE LEU ASP GLU ILE ALA ASP GLU TYR GLN GLY LYS SEQRES 5 A 108 LEU THR VAL ALA LYS LEU ASN ILE ASP GLN ASN ALA GLY SEQRES 6 A 108 THR ALA ALA LYS TYR GLY ILE ARG GLY ILE PRO THR LEU SEQRES 7 A 108 LEU LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL SEQRES 8 A 108 GLY ALA LEU SER LYS GLY GLN LEU LYS GLU PHE LEU ASP SEQRES 9 A 108 ALA ASN LEU ALA SEQRES 1 B 108 SER ASP LYS ILE ILE HIS LEU THR ASP ASP SER PHE ASP SEQRES 2 B 108 THR ASP VAL LEU LYS ALA ASP GLY ALA ILE LEU VAL ASP SEQRES 3 B 108 PHE TRP ALA GLU TRP CYS GLY ALA CYS LYS MET ILE ALA SEQRES 4 B 108 ALA ILE LEU ASP GLU ILE ALA ASP GLU TYR GLN GLY LYS SEQRES 5 B 108 LEU THR VAL ALA LYS LEU ASN ILE ASP GLN ASN ALA GLY SEQRES 6 B 108 THR ALA ALA LYS TYR GLY ILE ARG GLY ILE PRO THR LEU SEQRES 7 B 108 LEU LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL SEQRES 8 B 108 GLY ALA LEU SER LYS GLY GLN LEU LYS GLU PHE LEU ASP SEQRES 9 B 108 ALA ASN LEU ALA HET CU A 201 1 HET NA A 202 1 HET CU B 201 1 HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION FORMUL 3 CU 2(CU 2+) FORMUL 4 NA NA 1+ FORMUL 6 HOH *189(H2 O) HELIX 1 1 SER A 11 VAL A 16 1 6 HELIX 2 2 CYS A 32 TYR A 49 1 18 HELIX 3 3 ASN A 63 TYR A 70 1 8 HELIX 4 4 SER A 95 LEU A 107 1 13 HELIX 5 5 SER B 11 VAL B 16 1 6 HELIX 6 6 CYS B 32 TYR B 49 1 18 HELIX 7 7 ALA B 64 TYR B 70 1 7 HELIX 8 8 SER B 95 LEU B 107 1 13 SHEET 1 A 5 ILE A 4 LEU A 7 0 SHEET 2 A 5 LEU A 53 ASN A 59 1 O LYS A 57 N LEU A 7 SHEET 3 A 5 ALA A 22 TRP A 28 1 N LEU A 24 O THR A 54 SHEET 4 A 5 THR A 77 LYS A 82 -1 O PHE A 81 N ILE A 23 SHEET 5 A 5 GLU A 85 VAL A 91 -1 O LYS A 90 N LEU A 78 SHEET 1 B 5 ILE B 5 HIS B 6 0 SHEET 2 B 5 THR B 54 ASN B 59 1 O LYS B 57 N ILE B 5 SHEET 3 B 5 ALA B 22 TRP B 28 1 N LEU B 24 O ALA B 56 SHEET 4 B 5 THR B 77 LYS B 82 -1 O PHE B 81 N ILE B 23 SHEET 5 B 5 GLU B 85 VAL B 91 -1 O ALA B 87 N LEU B 80 SSBOND 1 CYS A 32 CYS A 35 1555 1555 2.03 SSBOND 2 CYS B 32 CYS B 35 1555 1555 2.02 LINK N SER A 1 CU CU A 201 1555 1555 1.99 LINK N ASP A 2 CU CU A 201 1555 1555 1.96 LINK OD1 ASP A 2 CU CU A 201 1555 1555 2.03 LINK NA NA A 202 O HOH A 336 1555 1555 3.02 LINK NE2 HIS B 6 CU CU B 201 1555 1555 2.05 LINK OE1 GLN B 62 CU CU B 201 1555 1555 2.65 LINK CU CU B 201 O HOH B 365 1555 1555 2.16 LINK CU CU B 201 O HOH B 366 1555 1555 2.36 CISPEP 1 ILE A 75 PRO A 76 0 -0.44 CISPEP 2 ILE B 75 PRO B 76 0 -7.88 SITE 1 AC1 5 SER A 1 ASP A 2 LYS A 3 HOH A 348 SITE 2 AC1 5 ASP B 10 SITE 1 AC2 3 VAL A 91 HOH A 336 GLY B 33 SITE 1 AC3 5 ASP A 47 HIS B 6 GLN B 62 HOH B 365 SITE 2 AC3 5 HOH B 366 CRYST1 33.850 60.880 45.330 90.00 100.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029542 0.000000 0.005409 0.00000 SCALE2 0.000000 0.016426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022427 0.00000