HEADER UNKNOWN FUNCTION 02-NOV-12 4HUC TITLE CRYSTAL STRUCTURE OF LDTMT2, A L,D-TRANSPEPTIDASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS: DOMAIN B AND C COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CONSERVED LIPOPROTEIN LPPS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 149-408; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: LPPS, MT2594, RV2518C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28BSA4 KEYWDS EXTRACELLULAR, TRANSPEPTIDASE, PEPTIDOGLYCAN REMODELING, PERIPLASMIC, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.BOTH,E.STEINER,Y.LINDQVIST,R.SCHNELL,G.SCHNEIDER REVDAT 3 28-FEB-24 4HUC 1 REMARK SEQADV LINK REVDAT 2 15-MAY-13 4HUC 1 JRNL REVDAT 1 12-DEC-12 4HUC 0 JRNL AUTH D.BOTH,E.M.STEINER,D.STADLER,Y.LINDQVIST,R.SCHNELL, JRNL AUTH 2 G.SCHNEIDER JRNL TITL STRUCTURE OF LDTMT2, AN L,D-TRANSPEPTIDASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 432 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519418 JRNL DOI 10.1107/S0907444912049268 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 67939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.14000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4195 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5731 ; 1.619 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 6.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;29.321 ;24.249 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;12.262 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3322 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 149 407 B 149 407 357 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 408 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3170 18.9250 32.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.0290 T22: 0.0153 REMARK 3 T33: 0.0737 T12: -0.0101 REMARK 3 T13: 0.0324 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.7840 L22: 1.1858 REMARK 3 L33: 0.3491 L12: 0.5921 REMARK 3 L13: -0.2064 L23: -0.1566 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.0123 S13: -0.0585 REMARK 3 S21: -0.1698 S22: 0.0486 S23: -0.2077 REMARK 3 S31: -0.0061 S32: 0.0403 S33: 0.0413 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 150 B 408 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3250 1.1350 49.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0225 T22: 0.0732 REMARK 3 T33: 0.0259 T12: -0.0304 REMARK 3 T13: 0.0090 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.7940 L22: 0.3278 REMARK 3 L33: 1.0026 L12: 0.3474 REMARK 3 L13: -0.4842 L23: -0.2824 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: 0.0418 S13: 0.0149 REMARK 3 S21: -0.0124 S22: 0.0444 S23: 0.0505 REMARK 3 S31: 0.1379 S32: -0.1934 S33: 0.0090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4HUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 86.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.06500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M NAOAC PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.01350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.64900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.64900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.01350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.01350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.64900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.01350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.64900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 773 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 147 REMARK 465 SER B 147 REMARK 465 MET B 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 775 O HOH B 790 1.94 REMARK 500 O HOH A 849 O HOH A 850 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 246 CG HIS A 246 CD2 0.088 REMARK 500 HIS B 246 CG HIS B 246 CD2 0.069 REMARK 500 TRP B 324 CE2 TRP B 324 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 347 -50.39 -139.18 REMARK 500 ASN A 405 36.64 -145.36 REMARK 500 ASN B 227 59.30 -91.72 REMARK 500 HIS B 347 -49.17 -135.70 REMARK 500 ASN B 405 36.24 -146.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 342 O REMARK 620 2 GLY A 343 O 82.7 REMARK 620 3 GLN A 345 O 107.3 89.2 REMARK 620 4 HOH A 653 O 142.2 92.4 110.0 REMARK 620 5 HOH A 713 O 86.1 93.5 166.6 56.7 REMARK 620 6 HOH A 774 O 92.5 171.6 85.6 95.6 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 342 O REMARK 620 2 GLY B 343 O 80.9 REMARK 620 3 GLN B 345 O 105.0 90.6 REMARK 620 4 HOH B 633 O 146.5 100.1 108.5 REMARK 620 5 HOH B 754 O 86.9 166.4 86.8 93.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HU2 RELATED DB: PDB DBREF 4HUC A 149 408 UNP O53223 O53223_MYCTU 149 408 DBREF 4HUC B 149 408 UNP O53223 O53223_MYCTU 149 408 SEQADV 4HUC SER A 147 UNP O53223 EXPRESSION TAG SEQADV 4HUC MET A 148 UNP O53223 EXPRESSION TAG SEQADV 4HUC SER B 147 UNP O53223 EXPRESSION TAG SEQADV 4HUC MET B 148 UNP O53223 EXPRESSION TAG SEQRES 1 A 262 SER MET ALA HIS LEU THR MET PRO TYR VAL MET PRO GLY SEQRES 2 A 262 ASP GLY GLU VAL VAL GLY VAL GLY GLU PRO VAL ALA ILE SEQRES 3 A 262 ARG PHE ASP GLU ASN ILE ALA ASP ARG GLY ALA ALA GLU SEQRES 4 A 262 LYS ALA ILE LYS ILE THR THR ASN PRO PRO VAL GLU GLY SEQRES 5 A 262 ALA PHE TYR TRP LEU ASN ASN ARG GLU VAL ARG TRP ARG SEQRES 6 A 262 PRO GLU HIS PHE TRP LYS PRO GLY THR ALA VAL ASP VAL SEQRES 7 A 262 ALA VAL ASN THR TYR GLY VAL ASP LEU GLY GLU GLY MET SEQRES 8 A 262 PHE GLY GLU ASP ASN VAL GLN THR HIS PHE THR ILE GLY SEQRES 9 A 262 ASP GLU VAL ILE ALA THR ALA ASP ASP ASN THR LYS ILE SEQRES 10 A 262 LEU THR VAL ARG VAL ASN GLY GLU VAL VAL LYS SER MET SEQRES 11 A 262 PRO THR SER MET GLY LYS ASP SER THR PRO THR ALA ASN SEQRES 12 A 262 GLY ILE TYR ILE VAL GLY SER ARG TYR LYS HIS ILE ILE SEQRES 13 A 262 MET ASP SER SER THR TYR GLY VAL PRO VAL ASN SER PRO SEQRES 14 A 262 ASN GLY TYR ARG THR ASP VAL ASP TRP ALA THR GLN ILE SEQRES 15 A 262 SER TYR SER GLY VAL PHE VAL HIS SER ALA PRO TRP SER SEQRES 16 A 262 VAL GLY ALA GLN GLY HIS THR ASN THR SER HIS GLY CYS SEQRES 17 A 262 LEU ASN VAL SER PRO SER ASN ALA GLN TRP PHE TYR ASP SEQRES 18 A 262 HIS VAL LYS ARG GLY ASP ILE VAL GLU VAL VAL ASN THR SEQRES 19 A 262 VAL GLY GLY THR LEU PRO GLY ILE ASP GLY LEU GLY ASP SEQRES 20 A 262 TRP ASN ILE PRO TRP ASP GLN TRP ARG ALA GLY ASN ALA SEQRES 21 A 262 LYS ALA SEQRES 1 B 262 SER MET ALA HIS LEU THR MET PRO TYR VAL MET PRO GLY SEQRES 2 B 262 ASP GLY GLU VAL VAL GLY VAL GLY GLU PRO VAL ALA ILE SEQRES 3 B 262 ARG PHE ASP GLU ASN ILE ALA ASP ARG GLY ALA ALA GLU SEQRES 4 B 262 LYS ALA ILE LYS ILE THR THR ASN PRO PRO VAL GLU GLY SEQRES 5 B 262 ALA PHE TYR TRP LEU ASN ASN ARG GLU VAL ARG TRP ARG SEQRES 6 B 262 PRO GLU HIS PHE TRP LYS PRO GLY THR ALA VAL ASP VAL SEQRES 7 B 262 ALA VAL ASN THR TYR GLY VAL ASP LEU GLY GLU GLY MET SEQRES 8 B 262 PHE GLY GLU ASP ASN VAL GLN THR HIS PHE THR ILE GLY SEQRES 9 B 262 ASP GLU VAL ILE ALA THR ALA ASP ASP ASN THR LYS ILE SEQRES 10 B 262 LEU THR VAL ARG VAL ASN GLY GLU VAL VAL LYS SER MET SEQRES 11 B 262 PRO THR SER MET GLY LYS ASP SER THR PRO THR ALA ASN SEQRES 12 B 262 GLY ILE TYR ILE VAL GLY SER ARG TYR LYS HIS ILE ILE SEQRES 13 B 262 MET ASP SER SER THR TYR GLY VAL PRO VAL ASN SER PRO SEQRES 14 B 262 ASN GLY TYR ARG THR ASP VAL ASP TRP ALA THR GLN ILE SEQRES 15 B 262 SER TYR SER GLY VAL PHE VAL HIS SER ALA PRO TRP SER SEQRES 16 B 262 VAL GLY ALA GLN GLY HIS THR ASN THR SER HIS GLY CYS SEQRES 17 B 262 LEU ASN VAL SER PRO SER ASN ALA GLN TRP PHE TYR ASP SEQRES 18 B 262 HIS VAL LYS ARG GLY ASP ILE VAL GLU VAL VAL ASN THR SEQRES 19 B 262 VAL GLY GLY THR LEU PRO GLY ILE ASP GLY LEU GLY ASP SEQRES 20 B 262 TRP ASN ILE PRO TRP ASP GLN TRP ARG ALA GLY ASN ALA SEQRES 21 B 262 LYS ALA HET ACT A 501 4 HET ACT A 502 4 HET ACT A 503 4 HET ACT A 504 4 HET ACT A 505 4 HET ACT A 506 4 HET ACT A 507 4 HET ACT A 508 4 HET NA A 509 1 HET ACT B 501 4 HET ACT B 502 4 HET ACT B 503 4 HET ACT B 504 4 HET NA B 505 1 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 3 ACT 12(C2 H3 O2 1-) FORMUL 11 NA 2(NA 1+) FORMUL 17 HOH *480(H2 O) HELIX 1 1 ASP A 180 ALA A 187 1 8 HELIX 2 2 SER A 306 GLY A 309 5 4 HELIX 3 3 PRO A 339 VAL A 342 5 4 HELIX 4 4 SER A 358 VAL A 369 1 12 HELIX 5 5 GLY A 392 ILE A 396 5 5 HELIX 6 6 PRO A 397 GLY A 404 1 8 HELIX 7 7 ASP B 180 ALA B 187 1 8 HELIX 8 8 SER B 306 GLY B 309 5 4 HELIX 9 9 PRO B 339 VAL B 342 5 4 HELIX 10 10 SER B 358 VAL B 369 1 12 HELIX 11 11 GLY B 392 ILE B 396 5 5 HELIX 12 12 PRO B 397 GLY B 404 1 8 SHEET 1 A 2 HIS A 150 THR A 152 0 SHEET 2 A 2 MET A 237 GLY A 239 1 O PHE A 238 N HIS A 150 SHEET 1 B 4 PRO A 154 MET A 157 0 SHEET 2 B 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 B 4 GLU A 207 PRO A 212 -1 O TRP A 210 N VAL A 170 SHEET 4 B 4 GLY A 198 ASN A 204 -1 N TYR A 201 O ARG A 209 SHEET 1 C 4 VAL A 163 VAL A 164 0 SHEET 2 C 4 ASN A 242 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 C 4 ALA A 221 ASN A 227 -1 N VAL A 226 O VAL A 243 SHEET 4 C 4 ILE A 188 ASN A 193 -1 N LYS A 189 O ALA A 225 SHEET 1 D 5 GLU A 271 PRO A 277 0 SHEET 2 D 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 D 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 D 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 257 SHEET 5 D 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 E 4 ARG A 297 ASP A 304 0 SHEET 2 E 4 ARG A 319 GLN A 327 -1 O ALA A 325 N TYR A 298 SHEET 3 E 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 E 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 F 2 HIS B 150 THR B 152 0 SHEET 2 F 2 MET B 237 GLY B 239 1 O PHE B 238 N THR B 152 SHEET 1 G 4 PRO B 154 MET B 157 0 SHEET 2 G 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 G 4 GLU B 207 PRO B 212 -1 O TRP B 210 N VAL B 170 SHEET 4 G 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 H 4 VAL B 163 VAL B 164 0 SHEET 2 H 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 H 4 ALA B 221 VAL B 226 -1 N VAL B 226 O VAL B 243 SHEET 4 H 4 ILE B 188 ASN B 193 -1 N LYS B 189 O ALA B 225 SHEET 1 I 5 GLU B 271 PRO B 277 0 SHEET 2 I 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 I 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 I 5 ILE B 374 VAL B 378 1 O ILE B 374 N ALA B 255 SHEET 5 I 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 J 4 ARG B 297 ASP B 304 0 SHEET 2 J 4 ARG B 319 GLN B 327 -1 O ALA B 325 N TYR B 298 SHEET 3 J 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 J 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK O VAL A 342 NA NA A 509 1555 1555 2.33 LINK O GLY A 343 NA NA A 509 1555 1555 2.82 LINK O GLN A 345 NA NA A 509 1555 1555 2.45 LINK NA NA A 509 O HOH A 653 1555 1555 2.38 LINK NA NA A 509 O HOH A 713 1555 1555 2.50 LINK NA NA A 509 O HOH A 774 1555 1555 2.16 LINK O VAL B 342 NA NA B 505 1555 1555 2.34 LINK O GLY B 343 NA NA B 505 1555 1555 2.85 LINK O GLN B 345 NA NA B 505 1555 1555 2.52 LINK NA NA B 505 O HOH B 633 1555 1555 2.66 LINK NA NA B 505 O HOH B 754 1555 1555 2.42 CISPEP 1 MET A 157 PRO A 158 0 4.33 CISPEP 2 ASN A 193 PRO A 194 0 1.59 CISPEP 3 MET B 157 PRO B 158 0 6.57 CISPEP 4 ASN B 193 PRO B 194 0 2.29 SITE 1 AC1 8 VAL A 310 ASN A 316 HOH A 608 HOH A 834 SITE 2 AC1 8 ASN B 313 SER B 314 PRO B 315 HOH B 670 SITE 1 AC2 3 ASN A 204 TYR A 330 HOH A 813 SITE 1 AC3 7 MET A 303 TYR A 318 THR A 320 HIS A 352 SITE 2 AC3 7 HOH A 812 HOH A 814 HOH A 827 SITE 1 AC4 4 LYS A 299 ASP A 323 TRP A 324 HOH A 763 SITE 1 AC5 7 ASP A 223 HIS A 246 ARG A 319 GLY B 343 SITE 2 AC5 7 ALA B 344 HIS B 347 THR B 348 SITE 1 AC6 4 HIS A 214 PHE A 215 ACT A 508 HOH A 803 SITE 1 AC7 5 LEU A 385 PRO A 386 GLY A 387 ASN A 395 SITE 2 AC7 5 HOH A 694 SITE 1 AC8 4 ILE A 291 GLU A 376 ACT A 506 HOH A 835 SITE 1 AC9 6 VAL A 342 GLY A 343 GLN A 345 HOH A 653 SITE 2 AC9 6 HOH A 713 HOH A 774 SITE 1 BC1 5 ILE B 188 LYS B 189 ILE B 190 HOH B 645 SITE 2 BC1 5 HOH B 743 SITE 1 BC2 7 MET B 303 TYR B 318 THR B 320 HIS B 352 SITE 2 BC2 7 HOH B 789 HOH B 793 HOH B 799 SITE 1 BC3 3 HIS B 214 PHE B 215 HOH B 762 SITE 1 BC4 3 ASP B 160 GLN B 244 HOH B 646 SITE 1 BC5 6 HOH A 709 VAL B 342 GLY B 343 GLN B 345 SITE 2 BC5 6 HOH B 633 HOH B 754 CRYST1 116.027 121.430 123.298 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008110 0.00000