HEADER ISOMERASE 07-NOV-12 4HWG TITLE STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE FROM RICKETTSIA TITLE 2 BELLII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.3.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA BELLII; SOURCE 3 ORGANISM_TAXID: 336407; SOURCE 4 STRAIN: RML369-C; SOURCE 5 GENE: RBE_0708, RFFE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: RIBEA.00061.A.B1 KEYWDS SSGCID, UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE, EPIMERASE, UDP, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4HWG 1 REMARK SEQADV REVDAT 1 28-NOV-12 4HWG 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,B.SANKARAN,D.R.DAVIES,T.E.EDWARDS, JRNL AUTH 3 B.L.STAKER JRNL TITL STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE FROM JRNL TITL 2 RICKETTSIA BELLII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2068 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : -0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2962 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2861 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4018 ; 1.499 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6564 ; 0.823 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;35.617 ;24.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;12.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3322 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 655 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 376 REMARK 3 RESIDUE RANGE : A 400 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7050 16.6750 33.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1015 REMARK 3 T33: 0.2713 T12: -0.0321 REMARK 3 T13: 0.0438 T23: 0.1137 REMARK 3 L TENSOR REMARK 3 L11: 1.0303 L22: 0.7385 REMARK 3 L33: 0.4847 L12: -0.2869 REMARK 3 L13: -0.1213 L23: 0.1258 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.2449 S13: 0.3039 REMARK 3 S21: -0.2266 S22: -0.0577 S23: -0.2435 REMARK 3 S31: -0.1256 S32: 0.0852 S33: 0.0471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 3BEO, MODIFIED WITH CCP4 PROGRAM REMARK 200 CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALD BIO JCSG+ D5: 1.6M NA/K REMARK 280 PHOSPHATE, 100MM HEPES PH 7.5, RIBEA.00061.A.B1.PW36203 29.7MG/ REMARK 280 ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 73.35500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.35153 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.41667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 73.35500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.35153 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.41667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 73.35500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.35153 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.41667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 73.35500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.35153 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.41667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 73.35500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.35153 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 35.41667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 73.35500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.35153 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.41667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 84.70306 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 70.83333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 84.70306 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 70.83333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 84.70306 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 70.83333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 84.70306 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.83333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 84.70306 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 70.83333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 84.70306 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 70.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 106.25000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 106.25000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 106.25000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 554 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 642 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 669 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 739 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ASP A 50 REMARK 465 GLU A 206 REMARK 465 ASN A 207 REMARK 465 VAL A 208 REMARK 465 ASP A 209 REMARK 465 VAL A 210 REMARK 465 TRP A 377 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 39 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 PHE A 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 48 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 HIS A 237 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 PHE A 263 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 LYS A 339 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 643 O HOH A 740 2.16 REMARK 500 OE1 GLN A 124 O HOH A 641 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 304 CD GLU A 304 OE1 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 41.58 -158.00 REMARK 500 GLU A 248 -73.92 -37.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-RIBEA.00061.A RELATED DB: TARGETTRACK DBREF 4HWG A 1 377 UNP Q1RIM5 Q1RIM5_RICBR 1 377 SEQADV 4HWG MET A -7 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG ALA A -6 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG HIS A -5 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG HIS A -4 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG HIS A -3 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG HIS A -2 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG HIS A -1 UNP Q1RIM5 EXPRESSION TAG SEQADV 4HWG HIS A 0 UNP Q1RIM5 EXPRESSION TAG SEQRES 1 A 385 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS VAL MET SEQRES 2 A 385 THR ILE VAL GLY THR ARG PRO GLU LEU ILE LYS LEU CYS SEQRES 3 A 385 CYS VAL ILE SER GLU PHE ASP LYS HIS THR LYS HIS ILE SEQRES 4 A 385 LEU VAL HIS THR GLY GLN ASN TYR ALA TYR GLU LEU ASN SEQRES 5 A 385 GLN VAL PHE PHE ASP ASP MET GLY ILE ARG LYS PRO ASP SEQRES 6 A 385 TYR PHE LEU GLU VAL ALA ALA ASP ASN THR ALA LYS SER SEQRES 7 A 385 ILE GLY LEU VAL ILE GLU LYS VAL ASP GLU VAL LEU GLU SEQRES 8 A 385 LYS GLU LYS PRO ASP ALA VAL LEU PHE TYR GLY ASP THR SEQRES 9 A 385 ASN SER CYS LEU SER ALA ILE ALA ALA LYS ARG ARG LYS SEQRES 10 A 385 ILE PRO ILE PHE HIS MET GLU ALA GLY ASN ARG CYS PHE SEQRES 11 A 385 ASP GLN ARG VAL PRO GLU GLU ILE ASN ARG LYS ILE ILE SEQRES 12 A 385 ASP HIS ILE SER ASP VAL ASN ILE THR LEU THR GLU HIS SEQRES 13 A 385 ALA ARG ARG TYR LEU ILE ALA GLU GLY LEU PRO ALA GLU SEQRES 14 A 385 LEU THR PHE LYS SER GLY SER HIS MET PRO GLU VAL LEU SEQRES 15 A 385 ASP ARG PHE MET PRO LYS ILE LEU LYS SER ASP ILE LEU SEQRES 16 A 385 ASP LYS LEU SER LEU THR PRO LYS GLN TYR PHE LEU ILE SEQRES 17 A 385 SER SER HIS ARG GLU GLU ASN VAL ASP VAL LYS ASN ASN SEQRES 18 A 385 LEU LYS GLU LEU LEU ASN SER LEU GLN MET LEU ILE LYS SEQRES 19 A 385 GLU TYR ASN PHE LEU ILE ILE PHE SER THR HIS PRO ARG SEQRES 20 A 385 THR LYS LYS ARG LEU GLU ASP LEU GLU GLY PHE LYS GLU SEQRES 21 A 385 LEU GLY ASP LYS ILE ARG PHE LEU PRO ALA PHE SER PHE SEQRES 22 A 385 THR ASP TYR VAL LYS LEU GLN MET ASN ALA PHE CYS ILE SEQRES 23 A 385 LEU SER ASP SER GLY THR ILE THR GLU GLU ALA SER ILE SEQRES 24 A 385 LEU ASN LEU PRO ALA LEU ASN ILE ARG GLU ALA HIS GLU SEQRES 25 A 385 ARG PRO GLU GLY MET ASP ALA GLY THR LEU ILE MET SER SEQRES 26 A 385 GLY PHE LYS ALA GLU ARG VAL LEU GLN ALA VAL LYS THR SEQRES 27 A 385 ILE THR GLU GLU HIS ASP ASN ASN LYS ARG THR GLN GLY SEQRES 28 A 385 LEU VAL PRO ASP TYR ASN GLU ALA GLY LEU VAL SER LYS SEQRES 29 A 385 LYS ILE LEU ARG ILE VAL LEU SER TYR VAL ASP TYR ILE SEQRES 30 A 385 ASN ARG THR VAL TRP PHE LYS TRP HET PO4 A 400 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *242(H2 O) HELIX 1 1 THR A 10 THR A 28 1 19 HELIX 2 2 GLN A 37 ASN A 44 1 8 HELIX 3 3 ASN A 44 ASP A 49 1 6 HELIX 4 4 THR A 67 LYS A 86 1 20 HELIX 5 5 THR A 96 LEU A 100 5 5 HELIX 6 6 SER A 101 ARG A 108 1 8 HELIX 7 7 PRO A 127 SER A 139 1 13 HELIX 8 8 THR A 146 GLU A 156 1 11 HELIX 9 9 PRO A 159 GLU A 161 5 3 HELIX 10 10 HIS A 169 SER A 184 1 16 HELIX 11 11 ASP A 185 LEU A 190 1 6 HELIX 12 12 ASN A 212 ASN A 229 1 18 HELIX 13 13 HIS A 237 ASP A 246 1 10 HELIX 14 14 LEU A 247 ASP A 255 5 9 HELIX 15 15 SER A 264 ALA A 275 1 12 HELIX 16 16 THR A 284 LEU A 292 1 9 HELIX 17 17 PRO A 306 GLY A 312 1 7 HELIX 18 18 LYS A 320 GLU A 333 1 14 HELIX 19 19 VAL A 345 GLU A 350 1 6 HELIX 20 20 LEU A 353 VAL A 373 1 21 SHEET 1 A 7 TYR A 58 PHE A 59 0 SHEET 2 A 7 LYS A 29 HIS A 34 1 N HIS A 34 O TYR A 58 SHEET 3 A 7 LYS A 3 VAL A 8 1 N VAL A 4 O ILE A 31 SHEET 4 A 7 ALA A 89 TYR A 93 1 O LEU A 91 N MET A 5 SHEET 5 A 7 ILE A 112 MET A 115 1 O MET A 115 N PHE A 92 SHEET 6 A 7 VAL A 141 THR A 144 1 O ILE A 143 N HIS A 114 SHEET 7 A 7 THR A 163 LYS A 165 1 O PHE A 164 N THR A 144 SHEET 1 B 6 ILE A 257 PHE A 259 0 SHEET 2 B 6 LEU A 231 THR A 236 1 N PHE A 234 O ARG A 258 SHEET 3 B 6 TYR A 197 SER A 202 1 N ILE A 200 O ILE A 233 SHEET 4 B 6 CYS A 277 SER A 280 1 O LEU A 279 N SER A 201 SHEET 5 B 6 ALA A 296 ASN A 298 1 O LEU A 297 N ILE A 278 SHEET 6 B 6 ILE A 315 MET A 316 1 O ILE A 315 N ASN A 298 SITE 1 AC1 3 HIS A 34 TYR A 41 ASN A 44 CRYST1 146.710 146.710 106.250 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006816 0.003935 0.000000 0.00000 SCALE2 0.000000 0.007871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009412 0.00000