data_4HWJ # _entry.id 4HWJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.290 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HWJ RCSB RCSB076008 WWPDB D_1000076008 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4HW5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4HWJ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-11-08 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bajic, G.' 1 'Yatime, L.' 2 'Andersen, G.R.' 3 # _citation.id primary _citation.title 'Human C3a and C3a desArg anaphylatoxins have conserved structures, in contrast to C5a and C5a desArg.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 22 _citation.page_first 204 _citation.page_last 212 _citation.year 2013 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23184394 _citation.pdbx_database_id_DOI 10.1002/pro.2200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bajic, G.' 1 primary 'Yatime, L.' 2 primary 'Klos, A.' 3 primary 'Andersen, G.R.' 4 # _cell.entry_id 4HWJ _cell.length_a 63.750 _cell.length_b 63.750 _cell.length_c 106.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HWJ _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Complement C3' 9341.927 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;C3 and PZP-like alpha-2-macroglobulin domain-containing protein 1, Complement C3 beta chain, Complement C3 alpha chain, C3a anaphylatoxin, Acylation stimulating protein, ASP, C3adesArg, Complement C3b alpha' chain, Complement C3c alpha' chain fragment 1, Complement C3dg fragment, Complement C3g fragment, Complement C3d fragment, Complement C3f fragment, Complement C3c alpha' chain fragment 2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAGAAGSVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARASHLG LA ; _entity_poly.pdbx_seq_one_letter_code_can ;GAGAAGSVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARASHLG LA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLY n 1 4 ALA n 1 5 ALA n 1 6 GLY n 1 7 SER n 1 8 VAL n 1 9 GLN n 1 10 LEU n 1 11 THR n 1 12 GLU n 1 13 LYS n 1 14 ARG n 1 15 MET n 1 16 ASP n 1 17 LYS n 1 18 VAL n 1 19 GLY n 1 20 LYS n 1 21 TYR n 1 22 PRO n 1 23 LYS n 1 24 GLU n 1 25 LEU n 1 26 ARG n 1 27 LYS n 1 28 CYS n 1 29 CYS n 1 30 GLU n 1 31 ASP n 1 32 GLY n 1 33 MET n 1 34 ARG n 1 35 GLU n 1 36 ASN n 1 37 PRO n 1 38 MET n 1 39 ARG n 1 40 PHE n 1 41 SER n 1 42 CYS n 1 43 GLN n 1 44 ARG n 1 45 ARG n 1 46 THR n 1 47 ARG n 1 48 PHE n 1 49 ILE n 1 50 SER n 1 51 LEU n 1 52 GLY n 1 53 GLU n 1 54 ALA n 1 55 CYS n 1 56 LYS n 1 57 LYS n 1 58 VAL n 1 59 PHE n 1 60 LEU n 1 61 ASP n 1 62 CYS n 1 63 CYS n 1 64 ASN n 1 65 TYR n 1 66 ILE n 1 67 THR n 1 68 GLU n 1 69 LEU n 1 70 ARG n 1 71 ARG n 1 72 GLN n 1 73 HIS n 1 74 ALA n 1 75 ARG n 1 76 ALA n 1 77 SER n 1 78 HIS n 1 79 LEU n 1 80 GLY n 1 81 LEU n 1 82 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'C3, CPAMD1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'SHuffle T7' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET32a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CO3_HUMAN _struct_ref.pdbx_db_accession P01024 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARASHLGLA _struct_ref.pdbx_align_begin 672 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4HWJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01024 _struct_ref_seq.db_align_beg 672 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 747 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 672 _struct_ref_seq.pdbx_auth_seq_align_end 747 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HWJ GLY A 1 ? UNP P01024 ? ? 'EXPRESSION TAG' 666 1 1 4HWJ ALA A 2 ? UNP P01024 ? ? 'EXPRESSION TAG' 667 2 1 4HWJ GLY A 3 ? UNP P01024 ? ? 'EXPRESSION TAG' 668 3 1 4HWJ ALA A 4 ? UNP P01024 ? ? 'EXPRESSION TAG' 669 4 1 4HWJ ALA A 5 ? UNP P01024 ? ? 'EXPRESSION TAG' 670 5 1 4HWJ GLY A 6 ? UNP P01024 ? ? 'EXPRESSION TAG' 671 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4HWJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.34 _exptl_crystal.density_percent_sol 63.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M Tris pH 7.5-8.5, 25 % w/v PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 292K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2012-02-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.8 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-3' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.8 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4HWJ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 19.9 _reflns.d_resolution_high 2.6 _reflns.number_obs 4320 _reflns.number_all 4320 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.099 _reflns.pdbx_netI_over_sigmaI 29.3 _reflns.B_iso_Wilson_estimate 41.1 _reflns.pdbx_redundancy 21.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.7 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.0521 _reflns_shell.meanI_over_sigI_obs 8.3 _reflns_shell.pdbx_redundancy 22.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4HWJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4318 _refine.ls_number_reflns_all 4318 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.861 _refine.ls_d_res_high 2.600 _refine.ls_percent_reflns_obs 99.98 _refine.ls_R_factor_obs 0.2272 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2228 _refine.ls_R_factor_R_free 0.2702 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.66 _refine.ls_number_reflns_R_free 417 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 49.1619 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 24.53 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 614 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 641 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 19.861 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 629 'X-RAY DIFFRACTION' ? f_angle_d 0.630 ? ? 832 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.730 ? ? 254 'X-RAY DIFFRACTION' ? f_chiral_restr 0.048 ? ? 86 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 108 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6004 2.9756 1255 0.2245 100.00 0.2774 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.9756 3.7448 1267 0.2148 100.00 0.2778 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.7448 19.8615 1379 0.2269 100.00 0.2624 . . 141 . . . . # _struct.entry_id 4HWJ _struct.title 'Crystal Structure of the Human C3a desArg anaphylatoxin' _struct.pdbx_descriptor 'Complement C3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HWJ _struct_keywords.text ;complement system, anaphylatoxins, inflammation, C3a, C3a desArg, innate immunity, four-helix-bundle, C5a, C5a desArg, IMMUNE SYSTEM ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 9 ? LYS A 20 ? GLN A 674 LYS A 685 1 ? 12 HELX_P HELX_P2 2 TYR A 21 ? GLU A 24 ? TYR A 686 GLU A 689 5 ? 4 HELX_P HELX_P3 3 LEU A 25 ? MET A 33 ? LEU A 690 MET A 698 1 ? 9 HELX_P HELX_P4 4 GLN A 43 ? ARG A 47 ? GLN A 708 ARG A 712 5 ? 5 HELX_P HELX_P5 5 GLY A 52 ? LEU A 79 ? GLY A 717 LEU A 744 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 693 A CYS 720 1_555 ? ? ? ? ? ? ? 2.030 ? disulf2 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 62 SG ? ? A CYS 694 A CYS 727 1_555 ? ? ? ? ? ? ? 2.032 ? disulf3 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 707 A CYS 728 1_555 ? ? ? ? ? ? ? 2.036 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 801' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 THR A 67 ? THR A 732 . ? 1_555 ? 2 AC1 4 ARG A 70 ? ARG A 735 . ? 1_555 ? 3 AC1 4 HOH C . ? HOH A 903 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 905 . ? 1_555 ? # _atom_sites.entry_id 4HWJ _atom_sites.fract_transf_matrix[1][1] 0.015686 _atom_sites.fract_transf_matrix[1][2] 0.009056 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018113 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009396 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 666 ? ? ? A . n A 1 2 ALA 2 667 ? ? ? A . n A 1 3 GLY 3 668 ? ? ? A . n A 1 4 ALA 4 669 ? ? ? A . n A 1 5 ALA 5 670 ? ? ? A . n A 1 6 GLY 6 671 ? ? ? A . n A 1 7 SER 7 672 ? ? ? A . n A 1 8 VAL 8 673 673 VAL VAL A . n A 1 9 GLN 9 674 674 GLN GLN A . n A 1 10 LEU 10 675 675 LEU LEU A . n A 1 11 THR 11 676 676 THR THR A . n A 1 12 GLU 12 677 677 GLU GLU A . n A 1 13 LYS 13 678 678 LYS LYS A . n A 1 14 ARG 14 679 679 ARG ARG A . n A 1 15 MET 15 680 680 MET MET A . n A 1 16 ASP 16 681 681 ASP ASP A . n A 1 17 LYS 17 682 682 LYS LYS A . n A 1 18 VAL 18 683 683 VAL VAL A . n A 1 19 GLY 19 684 684 GLY GLY A . n A 1 20 LYS 20 685 685 LYS LYS A . n A 1 21 TYR 21 686 686 TYR TYR A . n A 1 22 PRO 22 687 687 PRO PRO A . n A 1 23 LYS 23 688 688 LYS LYS A . n A 1 24 GLU 24 689 689 GLU GLU A . n A 1 25 LEU 25 690 690 LEU LEU A . n A 1 26 ARG 26 691 691 ARG ARG A . n A 1 27 LYS 27 692 692 LYS LYS A . n A 1 28 CYS 28 693 693 CYS CYS A . n A 1 29 CYS 29 694 694 CYS CYS A . n A 1 30 GLU 30 695 695 GLU GLU A . n A 1 31 ASP 31 696 696 ASP ASP A . n A 1 32 GLY 32 697 697 GLY GLY A . n A 1 33 MET 33 698 698 MET MET A . n A 1 34 ARG 34 699 699 ARG ARG A . n A 1 35 GLU 35 700 700 GLU GLU A . n A 1 36 ASN 36 701 701 ASN ASN A . n A 1 37 PRO 37 702 702 PRO PRO A . n A 1 38 MET 38 703 703 MET MET A . n A 1 39 ARG 39 704 704 ARG ARG A . n A 1 40 PHE 40 705 705 PHE PHE A . n A 1 41 SER 41 706 706 SER SER A . n A 1 42 CYS 42 707 707 CYS CYS A . n A 1 43 GLN 43 708 708 GLN GLN A . n A 1 44 ARG 44 709 709 ARG ARG A . n A 1 45 ARG 45 710 710 ARG ARG A . n A 1 46 THR 46 711 711 THR THR A . n A 1 47 ARG 47 712 712 ARG ARG A . n A 1 48 PHE 48 713 713 PHE PHE A . n A 1 49 ILE 49 714 714 ILE ILE A . n A 1 50 SER 50 715 715 SER SER A . n A 1 51 LEU 51 716 716 LEU LEU A . n A 1 52 GLY 52 717 717 GLY GLY A . n A 1 53 GLU 53 718 718 GLU GLU A . n A 1 54 ALA 54 719 719 ALA ALA A . n A 1 55 CYS 55 720 720 CYS CYS A . n A 1 56 LYS 56 721 721 LYS LYS A . n A 1 57 LYS 57 722 722 LYS LYS A . n A 1 58 VAL 58 723 723 VAL VAL A . n A 1 59 PHE 59 724 724 PHE PHE A . n A 1 60 LEU 60 725 725 LEU LEU A . n A 1 61 ASP 61 726 726 ASP ASP A . n A 1 62 CYS 62 727 727 CYS CYS A . n A 1 63 CYS 63 728 728 CYS CYS A . n A 1 64 ASN 64 729 729 ASN ASN A . n A 1 65 TYR 65 730 730 TYR TYR A . n A 1 66 ILE 66 731 731 ILE ILE A . n A 1 67 THR 67 732 732 THR THR A . n A 1 68 GLU 68 733 733 GLU GLU A . n A 1 69 LEU 69 734 734 LEU LEU A . n A 1 70 ARG 70 735 735 ARG ARG A . n A 1 71 ARG 71 736 736 ARG ARG A . n A 1 72 GLN 72 737 737 GLN GLN A . n A 1 73 HIS 73 738 738 HIS HIS A . n A 1 74 ALA 74 739 739 ALA ALA A . n A 1 75 ARG 75 740 740 ARG ARG A . n A 1 76 ALA 76 741 741 ALA ALA A . n A 1 77 SER 77 742 742 SER SER A . n A 1 78 HIS 78 743 743 HIS HIS A . n A 1 79 LEU 79 744 744 LEU LEU A . n A 1 80 GLY 80 745 745 GLY GLY A . n A 1 81 LEU 81 746 746 LEU LEU A . n A 1 82 ALA 82 747 747 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 801 1 SO4 SO4 A . C 3 HOH 1 901 1 HOH HOH A . C 3 HOH 2 902 2 HOH HOH A . C 3 HOH 3 903 3 HOH HOH A . C 3 HOH 4 904 4 HOH HOH A . C 3 HOH 5 905 5 HOH HOH A . C 3 HOH 6 906 6 HOH HOH A . C 3 HOH 7 907 7 HOH HOH A . C 3 HOH 8 908 10 HOH HOH A . C 3 HOH 9 909 11 HOH HOH A . C 3 HOH 10 910 12 HOH HOH A . C 3 HOH 11 911 13 HOH HOH A . C 3 HOH 12 912 14 HOH HOH A . C 3 HOH 13 913 15 HOH HOH A . C 3 HOH 14 914 16 HOH HOH A . C 3 HOH 15 915 17 HOH HOH A . C 3 HOH 16 916 18 HOH HOH A . C 3 HOH 17 917 19 HOH HOH A . C 3 HOH 18 918 20 HOH HOH A . C 3 HOH 19 919 21 HOH HOH A . C 3 HOH 20 920 22 HOH HOH A . C 3 HOH 21 921 23 HOH HOH A . C 3 HOH 22 922 24 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2013-02-13 3 'Structure model' 1 2 2018-03-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -80.9776 78.4568 234.0331 1.0306 0.4046 0.3739 0.1071 -0.0657 -0.0754 6.2821 1.1626 7.8791 0.9582 -0.2710 -2.6232 -0.2435 -0.2922 0.5925 2.5282 0.4609 -0.2972 -0.3395 -0.2245 -0.2553 'X-RAY DIFFRACTION' 2 ? refined -74.7613 71.0959 220.5458 0.2936 0.3285 0.3639 -0.0071 -0.0191 -0.0420 3.8710 6.8868 8.5046 1.7266 -3.1433 -2.5582 -0.4508 -0.0682 -0.1254 0.3794 0.0661 -0.7973 0.7828 -0.4585 0.2300 'X-RAY DIFFRACTION' 3 ? refined -85.0637 79.3980 222.9033 0.2558 0.1842 0.2550 0.0303 -0.0395 0.0250 3.0004 8.3415 4.7532 -3.9660 2.3444 -3.0240 0.3726 0.0863 -0.2658 0.2477 -0.2656 0.4200 0.6121 0.4749 -0.1205 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 673 through 698 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 699 through 717 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 718 through 747 ) ; # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MxCuBE . ? ? ? ? 'data collection' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 715 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 37.44 _pdbx_validate_torsion.psi 58.06 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 666 ? A GLY 1 2 1 Y 1 A ALA 667 ? A ALA 2 3 1 Y 1 A GLY 668 ? A GLY 3 4 1 Y 1 A ALA 669 ? A ALA 4 5 1 Y 1 A ALA 670 ? A ALA 5 6 1 Y 1 A GLY 671 ? A GLY 6 7 1 Y 1 A SER 672 ? A SER 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #