HEADER HYDROLASE/HYDROLASE INHIBITOR 12-NOV-12 4HXX TITLE PYRIDINYLPYRIMIDINES SELECTIVELY INHIBIT HUMAN METHIONINE TITLE 2 AMINOPEPTIDASE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 81-384; COMPND 5 SYNONYM: MAP 1, METAP 1, PEPTIDASE M 1; COMPND 6 EC: 3.4.11.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: BL21; SOURCE 6 GENE: KIAA0094, METAP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMINOPEPTIDASES, PYRIMIDINES, PYRIMIDYL GROUP, PYRIDINYLPYRIMIDINE, KEYWDS 2 CELL CYCLE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.B.GABELLI,F.ZHANG,J.LIU,L.M.AMZEL REVDAT 7 28-FEB-24 4HXX 1 REMARK LINK REVDAT 6 20-NOV-19 4HXX 1 LINK REVDAT 5 15-NOV-17 4HXX 1 REMARK REVDAT 4 02-APR-14 4HXX 1 HETATM REVDAT 3 15-MAY-13 4HXX 1 JRNL REVDAT 2 24-APR-13 4HXX 1 JRNL REVDAT 1 03-APR-13 4HXX 0 JRNL AUTH P.ZHANG,X.YANG,F.ZHANG,S.B.GABELLI,R.WANG,Y.ZHANG,S.BHAT, JRNL AUTH 2 X.CHEN,M.FURLANI,L.M.AMZEL,J.O.LIU,D.MA JRNL TITL PYRIDINYLPYRIMIDINES SELECTIVELY INHIBIT HUMAN METHIONINE JRNL TITL 2 AMINOPEPTIDASE-1. JRNL REF BIOORG.MED.CHEM. V. 21 2600 2013 JRNL REFN ISSN 0968-0896 JRNL PMID 23507151 JRNL DOI 10.1016/J.BMC.2013.02.023 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 20226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : -3.67000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2490 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3382 ; 1.551 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;39.485 ;23.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;15.199 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.728 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1922 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1283 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1660 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 150 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.102 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1515 ; 0.911 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2456 ; 1.610 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1026 ; 2.540 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ; 3.884 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-20 % PEG MONOMETHYL ETHER 2000, 100 REMARK 280 MM MES, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.70150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 240 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -108.49 54.34 REMARK 500 HIS A 306 -101.21 -173.72 REMARK 500 LYS A 320 16.99 56.12 REMARK 500 GLU A 336 59.79 -142.97 REMARK 500 PRO A 350 -4.46 -59.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 1AY A 405 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 205 O REMARK 620 2 ASN A 207 O 128.5 REMARK 620 3 VAL A 209 O 98.0 86.4 REMARK 620 4 SER A 363 O 144.1 75.1 111.5 REMARK 620 5 HOH A 508 O 89.3 142.1 90.0 71.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 212 NE2 REMARK 620 2 1AY A 405 N2 79.2 REMARK 620 3 1AY A 405 N25 95.9 75.4 REMARK 620 4 HOH A 524 O 93.4 171.2 110.4 REMARK 620 5 HOH A 568 O 93.5 92.1 162.6 83.6 REMARK 620 6 HOH A 587 O 165.3 86.1 79.0 101.3 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 ASP A 229 OD2 53.3 REMARK 620 3 ASP A 240 OD1 97.6 150.8 REMARK 620 4 GLU A 367 OE1 102.5 103.7 80.4 REMARK 620 5 HOH A 506 O 85.5 90.6 86.8 165.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 HIS A 303 NE2 87.9 REMARK 620 3 GLU A 336 OE1 158.0 91.2 REMARK 620 4 GLU A 367 OE2 86.5 116.4 74.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1AY A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 DBREF 4HXX A 90 393 UNP P53582 AMPM1_HUMAN 81 384 SEQRES 1 A 304 TYR ARG TYR THR GLY LYS LEU ARG PRO HIS TYR PRO LEU SEQRES 2 A 304 MET PRO THR ARG PRO VAL PRO SER TYR ILE GLN ARG PRO SEQRES 3 A 304 ASP TYR ALA ASP HIS PRO LEU GLY MET SER GLU SER GLU SEQRES 4 A 304 GLN ALA LEU LYS GLY THR SER GLN ILE LYS LEU LEU SER SEQRES 5 A 304 SER GLU ASP ILE GLU GLY MET ARG LEU VAL CYS ARG LEU SEQRES 6 A 304 ALA ARG GLU VAL LEU ASP VAL ALA ALA GLY MET ILE LYS SEQRES 7 A 304 PRO GLY VAL THR THR GLU GLU ILE ASP HIS ALA VAL HIS SEQRES 8 A 304 LEU ALA CYS ILE ALA ARG ASN CYS TYR PRO SER PRO LEU SEQRES 9 A 304 ASN TYR TYR ASN PHE PRO LYS SER CYS CYS THR SER VAL SEQRES 10 A 304 ASN GLU VAL ILE CYS HIS GLY ILE PRO ASP ARG ARG PRO SEQRES 11 A 304 LEU GLN GLU GLY ASP ILE VAL ASN VAL ASP ILE THR LEU SEQRES 12 A 304 TYR ARG ASN GLY TYR HIS GLY ASP LEU ASN GLU THR PHE SEQRES 13 A 304 PHE VAL GLY GLU VAL ASP ASP GLY ALA ARG LYS LEU VAL SEQRES 14 A 304 GLN THR THR TYR GLU CYS LEU MET GLN ALA ILE ASP ALA SEQRES 15 A 304 VAL LYS PRO GLY VAL ARG TYR ARG GLU LEU GLY ASN ILE SEQRES 16 A 304 ILE GLN LYS HIS ALA GLN ALA ASN GLY PHE SER VAL VAL SEQRES 17 A 304 ARG SER TYR CYS GLY HIS GLY ILE HIS LYS LEU PHE HIS SEQRES 18 A 304 THR ALA PRO ASN VAL PRO HIS TYR ALA LYS ASN LYS ALA SEQRES 19 A 304 VAL GLY VAL MET LYS SER GLY HIS VAL PHE THR ILE GLU SEQRES 20 A 304 PRO MET ILE CYS GLU GLY GLY TRP GLN ASP GLU THR TRP SEQRES 21 A 304 PRO ASP GLY TRP THR ALA VAL THR ARG ASP GLY LYS ARG SEQRES 22 A 304 SER ALA GLN PHE GLU HIS THR LEU LEU VAL THR ASP THR SEQRES 23 A 304 GLY CYS GLU ILE LEU THR ARG ARG LEU ASP SER ALA ARG SEQRES 24 A 304 PRO HIS PHE MET SER HET CO A 401 1 HET CO A 402 1 HET CO A 403 1 HET K A 404 1 HET 1AY A 405 35 HET SO4 A 406 5 HET SO4 A 407 5 HETNAM CO COBALT (II) ION HETNAM K POTASSIUM ION HETNAM 1AY (1R)-N~2~-[5-CHLORO-2-(5-CHLOROPYRIDIN-2-YL)-6- HETNAM 2 1AY METHYLPYRIMIDIN-4-YL]-1-PHENYL-N~1~-(4-PHENYLBUTYL) HETNAM 3 1AY ETHANE-1,2-DIAMINE HETNAM SO4 SULFATE ION FORMUL 2 CO 3(CO 2+) FORMUL 5 K K 1+ FORMUL 6 1AY C28 H29 CL2 N5 FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *158(H2 O) HELIX 1 1 PRO A 115 ASP A 119 5 5 HELIX 2 2 SER A 125 ALA A 130 1 6 HELIX 3 3 SER A 141 GLY A 164 1 24 HELIX 4 4 THR A 171 ARG A 186 1 16 HELIX 5 5 ASN A 194 PHE A 198 5 5 HELIX 6 6 ASP A 251 ALA A 271 1 21 HELIX 7 7 ARG A 279 ASN A 292 1 14 HELIX 8 8 PRO A 389 SER A 393 5 5 SHEET 1 A 3 TYR A 189 PRO A 190 0 SHEET 2 A 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 A 3 CYS A 203 VAL A 206 -1 N CYS A 203 O ASP A 229 SHEET 1 B 3 TYR A 189 PRO A 190 0 SHEET 2 B 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 B 3 TYR A 237 PHE A 246 -1 O LEU A 241 N ILE A 230 SHEET 1 C 3 VAL A 209 CYS A 211 0 SHEET 2 C 3 ALA A 355 THR A 357 -1 O ALA A 355 N ILE A 210 SHEET 3 C 3 ASP A 346 THR A 348 -1 N GLU A 347 O VAL A 356 SHEET 1 D 3 SER A 295 VAL A 296 0 SHEET 2 D 3 MET A 338 CYS A 340 -1 O CYS A 340 N SER A 295 SHEET 3 D 3 SER A 363 GLN A 365 -1 O ALA A 364 N ILE A 339 SHEET 1 E 2 GLY A 302 GLY A 304 0 SHEET 2 E 2 THR A 311 VAL A 315 -1 O VAL A 315 N GLY A 302 SHEET 1 F 3 VAL A 332 ILE A 335 0 SHEET 2 F 3 HIS A 368 VAL A 372 -1 O LEU A 370 N PHE A 333 SHEET 3 F 3 CYS A 377 ILE A 379 -1 O GLU A 378 N LEU A 371 LINK O SER A 205 K K A 404 1555 1555 2.99 LINK O ASN A 207 K K A 404 1555 1555 2.86 LINK O VAL A 209 K K A 404 1555 1555 2.65 LINK NE2 HIS A 212 CO CO A 403 1555 1555 2.17 LINK OD1 ASP A 229 CO CO A 402 1555 1555 2.14 LINK OD2 ASP A 229 CO CO A 402 1555 1555 2.59 LINK OD2 ASP A 240 CO CO A 401 1555 1555 2.09 LINK OD1 ASP A 240 CO CO A 402 1555 1555 2.01 LINK NE2 HIS A 303 CO CO A 401 1555 1555 2.13 LINK OE1 GLU A 336 CO CO A 401 1555 1555 2.06 LINK O SER A 363 K K A 404 1555 1555 2.75 LINK OE2 GLU A 367 CO CO A 401 1555 1555 1.86 LINK OE1 GLU A 367 CO CO A 402 1555 1555 2.14 LINK CO CO A 402 O HOH A 506 1555 1555 2.08 LINK CO CO A 403 N2 1AY A 405 1555 1555 2.10 LINK CO CO A 403 N25 1AY A 405 1555 1555 2.29 LINK CO CO A 403 O HOH A 524 1555 1555 2.49 LINK CO CO A 403 O HOH A 568 1555 1555 2.40 LINK CO CO A 403 O HOH A 587 1555 1555 2.27 LINK K K A 404 O HOH A 508 1555 1555 2.81 CISPEP 1 TYR A 100 PRO A 101 0 6.91 CISPEP 2 ALA A 312 PRO A 313 0 4.00 SITE 1 AC1 5 ASP A 240 HIS A 303 GLU A 336 GLU A 367 SITE 2 AC1 5 CO A 402 SITE 1 AC2 5 ASP A 229 ASP A 240 GLU A 367 CO A 401 SITE 2 AC2 5 HOH A 506 SITE 1 AC3 5 HIS A 212 1AY A 405 HOH A 524 HOH A 568 SITE 2 AC3 5 HOH A 587 SITE 1 AC4 6 SER A 205 VAL A 206 ASN A 207 VAL A 209 SITE 2 AC4 6 SER A 363 HOH A 508 SITE 1 AC5 9 TYR A 195 PHE A 198 HIS A 212 CYS A 301 SITE 2 AC5 9 HIS A 310 GLU A 336 TRP A 353 CO A 403 SITE 3 AC5 9 HOH A 587 SITE 1 AC6 7 LYS A 95 LEU A 96 ARG A 97 HIS A 99 SITE 2 AC6 7 ARG A 218 GLN A 221 HOH A 565 SITE 1 AC7 4 ARG A 234 GLN A 286 HOH A 511 HOH A 545 CRYST1 47.500 77.403 48.068 90.00 90.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021053 0.000000 0.000338 0.00000 SCALE2 0.000000 0.012919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020807 0.00000