data_4HY2 # _entry.id 4HY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HY2 RCSB RCSB076063 WWPDB D_1000076063 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4HAB _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4HY2 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-11-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, W.C.' 1 'Song, J.H.' 2 'Kim, H.Y.' 3 # _citation.id primary _citation.title 'Development of cyclic peptomer inhibitors targeting the polo-box domain of polo-like kinase 1.' _citation.journal_abbrev Bioorg.Med.Chem. _citation.journal_volume 21 _citation.page_first 2623 _citation.page_last 2634 _citation.year 2013 _citation.journal_id_ASTM BMECEP _citation.country UK _citation.journal_id_ISSN 0968-0896 _citation.journal_id_CSD 1200 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23498919 _citation.pdbx_database_id_DOI 10.1016/j.bmc.2013.02.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Murugan, R.N.' 1 primary 'Park, J.E.' 2 primary 'Lim, D.' 3 primary 'Ahn, M.' 4 primary 'Cheong, C.' 5 primary 'Kwon, T.' 6 primary 'Nam, K.Y.' 7 primary 'Choi, S.H.' 8 primary 'Kim, B.Y.' 9 primary 'Yoon, D.Y.' 10 primary 'Yaffe, M.B.' 11 primary 'Yu, D.Y.' 12 primary 'Lee, K.S.' 13 primary 'Bang, J.K.' 14 # _cell.length_a 35.4253 _cell.length_b 50.2621 _cell.length_c 57.4562 _cell.angle_alpha 90.000 _cell.angle_beta 101.5152 _cell.angle_gamma 90.000 _cell.entry_id 4HY2 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4HY2 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase PLK1' 26057.736 1 2.7.11.21 ? ? ? 2 polymer syn PL-42 944.001 1 ? ? ? ? 3 water nat water 18.015 78 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polo-like kinase 1, PLK-1, Serine/threonine-protein kinase 13, STPK13' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDS LQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSV QINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRS ; ;DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDS LQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSV QINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRS ; A ? 2 'polypeptide(L)' no yes '(1C3)LHS(TPO)M(NH2)' XLHSTMX D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 CYS n 1 3 HIS n 1 4 LEU n 1 5 SER n 1 6 ASP n 1 7 MET n 1 8 LEU n 1 9 GLN n 1 10 GLN n 1 11 LEU n 1 12 HIS n 1 13 SER n 1 14 VAL n 1 15 ASN n 1 16 ALA n 1 17 SER n 1 18 LYS n 1 19 PRO n 1 20 SER n 1 21 GLU n 1 22 ARG n 1 23 GLY n 1 24 LEU n 1 25 VAL n 1 26 ARG n 1 27 GLN n 1 28 GLU n 1 29 GLU n 1 30 ALA n 1 31 GLU n 1 32 ASP n 1 33 PRO n 1 34 ALA n 1 35 CYS n 1 36 ILE n 1 37 PRO n 1 38 ILE n 1 39 PHE n 1 40 TRP n 1 41 VAL n 1 42 SER n 1 43 LYS n 1 44 TRP n 1 45 VAL n 1 46 ASP n 1 47 TYR n 1 48 SER n 1 49 ASP n 1 50 LYS n 1 51 TYR n 1 52 GLY n 1 53 LEU n 1 54 GLY n 1 55 TYR n 1 56 GLN n 1 57 LEU n 1 58 CYS n 1 59 ASP n 1 60 ASN n 1 61 SER n 1 62 VAL n 1 63 GLY n 1 64 VAL n 1 65 LEU n 1 66 PHE n 1 67 ASN n 1 68 ASP n 1 69 SER n 1 70 THR n 1 71 ARG n 1 72 LEU n 1 73 ILE n 1 74 LEU n 1 75 TYR n 1 76 ASN n 1 77 ASP n 1 78 GLY n 1 79 ASP n 1 80 SER n 1 81 LEU n 1 82 GLN n 1 83 TYR n 1 84 ILE n 1 85 GLU n 1 86 ARG n 1 87 ASP n 1 88 GLY n 1 89 THR n 1 90 GLU n 1 91 SER n 1 92 TYR n 1 93 LEU n 1 94 THR n 1 95 VAL n 1 96 SER n 1 97 SER n 1 98 HIS n 1 99 PRO n 1 100 ASN n 1 101 SER n 1 102 LEU n 1 103 MET n 1 104 LYS n 1 105 LYS n 1 106 ILE n 1 107 THR n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 TYR n 1 112 PHE n 1 113 ARG n 1 114 ASN n 1 115 TYR n 1 116 MET n 1 117 SER n 1 118 GLU n 1 119 HIS n 1 120 LEU n 1 121 LEU n 1 122 LYS n 1 123 ALA n 1 124 GLY n 1 125 ALA n 1 126 ASN n 1 127 ILE n 1 128 THR n 1 129 PRO n 1 130 ARG n 1 131 GLU n 1 132 GLY n 1 133 ASP n 1 134 GLU n 1 135 LEU n 1 136 ALA n 1 137 ARG n 1 138 LEU n 1 139 PRO n 1 140 TYR n 1 141 LEU n 1 142 ARG n 1 143 THR n 1 144 TRP n 1 145 PHE n 1 146 ARG n 1 147 THR n 1 148 ARG n 1 149 SER n 1 150 ALA n 1 151 ILE n 1 152 ILE n 1 153 LEU n 1 154 HIS n 1 155 LEU n 1 156 SER n 1 157 ASN n 1 158 GLY n 1 159 SER n 1 160 VAL n 1 161 GLN n 1 162 ILE n 1 163 ASN n 1 164 PHE n 1 165 PHE n 1 166 GLN n 1 167 ASP n 1 168 HIS n 1 169 THR n 1 170 LYS n 1 171 LEU n 1 172 ILE n 1 173 LEU n 1 174 CYS n 1 175 PRO n 1 176 LEU n 1 177 MET n 1 178 ALA n 1 179 ALA n 1 180 VAL n 1 181 THR n 1 182 TYR n 1 183 ILE n 1 184 ASP n 1 185 GLU n 1 186 LYS n 1 187 ARG n 1 188 ASP n 1 189 PHE n 1 190 ARG n 1 191 THR n 1 192 TYR n 1 193 ARG n 1 194 LEU n 1 195 SER n 1 196 LEU n 1 197 LEU n 1 198 GLU n 1 199 GLU n 1 200 TYR n 1 201 GLY n 1 202 CYS n 1 203 CYS n 1 204 LYS n 1 205 GLU n 1 206 LEU n 1 207 ALA n 1 208 SER n 1 209 ARG n 1 210 LEU n 1 211 ARG n 1 212 TYR n 1 213 ALA n 1 214 ARG n 1 215 THR n 1 216 MET n 1 217 VAL n 1 218 ASP n 1 219 LYS n 1 220 LEU n 1 221 LEU n 1 222 SER n 1 223 SER n 1 224 ARG n 1 225 SER n 2 1 1C3 n 2 2 LEU n 2 3 HIS n 2 4 SER n 2 5 TPO n 2 6 MET n 2 7 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PLK, PLK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'synthetic peptide PL-42' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PLK1_HUMAN P53350 1 ;DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDS LQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSV QINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRS ; 371 ? 2 PDB 4HY2 4HY2 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HY2 A 1 ? 225 ? P53350 371 ? 595 ? 371 595 2 2 4HY2 D 1 ? 7 ? 4HY2 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1C3 'L-peptide linking' . '1-(3,4,5-trimethoxybenzyl)-L-proline' ? 'C15 H21 N O5' 295.331 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4HY2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 33.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 10.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1M CAPS pH 8, 0.2M LiSO4, 0.8M K2HPO4 NaH2PO4, vapor diffusion, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2011-10-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-1A' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-1A # _reflns.entry_id 4HY2 _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 56.300 _reflns.number_all 13200 _reflns.number_obs 13200 _reflns.pdbx_netI_over_sigmaI 13.600 _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_redundancy 3.000 _reflns.percent_possible_obs 98.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.110 ? 5663 ? 0.249 3.000 0.249 ? 3.000 ? 1912 97.800 1 1 2.110 2.240 ? 5462 ? 0.175 4.200 0.175 ? 3.000 ? 1806 98.000 2 1 2.240 2.390 ? 5279 ? 0.134 5.400 0.134 ? 3.100 ? 1719 98.000 3 1 2.390 2.580 ? 4776 ? 0.103 7.000 0.103 ? 3.000 ? 1573 98.300 4 1 2.580 2.830 ? 4497 ? 0.070 10.000 0.070 ? 3.000 ? 1476 98.400 5 1 2.830 3.160 ? 4108 ? 0.048 14.200 0.048 ? 3.100 ? 1335 97.900 6 1 3.160 3.650 ? 3548 ? 0.039 15.700 0.039 ? 3.000 ? 1166 98.400 7 1 3.650 4.470 ? 3086 ? 0.032 18.400 0.032 ? 3.100 ? 1003 98.400 8 1 4.470 6.320 ? 2329 ? 0.031 14.900 0.031 ? 3.000 ? 783 98.700 9 1 6.320 50.262 ? 1214 ? 0.028 20.200 0.028 ? 2.800 ? 427 95.000 10 1 # _refine.entry_id 4HY2 _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 50.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.5000 _refine.ls_number_reflns_obs 13187 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.1991 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2465 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 646 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.5784 _refine.solvent_model_param_bsol 50.2551 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.0810 _refine.aniso_B[2][2] 4.3800 _refine.aniso_B[3][3] -3.2990 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 4.1160 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 80.520 _refine.B_iso_min 16.780 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1813 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 1891 _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 50.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.006 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 1.243 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 1.590 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.329 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 2.522 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 3.434 2.500 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.0000 2.0700 10 97.2000 1243 . 0.2381 0.2389 . 63 . 1306 . . 'X-RAY DIFFRACTION' 2.0700 2.1500 10 97.4000 1214 . 0.2196 0.2445 . 73 . 1287 . . 'X-RAY DIFFRACTION' 2.1500 2.2500 10 97.7000 1263 . 0.2149 0.2634 . 55 . 1318 . . 'X-RAY DIFFRACTION' 2.2500 2.3700 10 97.6000 1282 . 0.2059 0.3295 . 52 . 1334 . . 'X-RAY DIFFRACTION' 2.3700 2.5200 10 97.7000 1240 . 0.2044 0.2353 . 68 . 1308 . . 'X-RAY DIFFRACTION' 2.5200 2.7100 10 98.1000 1250 . 0.2352 0.2775 . 69 . 1319 . . 'X-RAY DIFFRACTION' 2.7100 2.9900 10 97.4000 1237 . 0.2280 0.3549 . 71 . 1308 . . 'X-RAY DIFFRACTION' 2.9900 3.4200 10 97.5000 1265 . 0.2095 0.2383 . 60 . 1325 . . 'X-RAY DIFFRACTION' 3.4200 4.3100 10 98.1000 1276 . 0.1664 0.2173 . 59 . 1335 . . 'X-RAY DIFFRACTION' 4.3100 50.0000 10 96.3000 1271 . 0.1845 0.2138 . 76 . 1347 . . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:dna-rna.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 CNS_TOPPAR:carbohydrate.param CNS_TOPPAR:carbohydrate.top 'X-RAY DIFFRACTION' 6 capping.par capping.top 'X-RAY DIFFRACTION' 7 TPO.par TPO.top 'X-RAY DIFFRACTION' 8 CXS.par CXS.top 'X-RAY DIFFRACTION' 9 1C3.par 1C3.top 'X-RAY DIFFRACTION' # _struct.entry_id 4HY2 _struct.title 'Crystal structure of Plk1 Polo-box domain in complex with PL-42' _struct.pdbx_descriptor 'Serine/threonine-protein kinase PLK1 (E.C.2.7.11.21), PL-42' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HY2 _struct_keywords.text 'Polo-box domain, HYDROLASE-HYDROLASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 3 ? SER A 17 ? HIS A 373 SER A 387 1 ? 15 HELX_P HELX_P2 2 ARG A 26 ? GLU A 31 ? ARG A 396 GLU A 401 5 ? 6 HELX_P HELX_P3 3 ASP A 32 ? ILE A 36 ? ASP A 402 ILE A 406 5 ? 5 HELX_P HELX_P4 4 PRO A 99 ? SER A 101 ? PRO A 469 SER A 471 5 ? 3 HELX_P HELX_P5 5 LEU A 102 ? LEU A 120 ? LEU A 472 LEU A 490 1 ? 19 HELX_P HELX_P6 6 LEU A 194 ? GLY A 201 ? LEU A 564 GLY A 571 1 ? 8 HELX_P HELX_P7 7 CYS A 203 ? SER A 222 ? CYS A 573 SER A 592 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B 1C3 1 C ? ? ? 1_555 B LEU 2 N ? ? D 1C3 1 D LEU 2 1_555 ? ? ? ? ? ? ? 1.326 sing covale2 covale ? ? B SER 4 C ? ? ? 1_555 B TPO 5 N ? ? D SER 4 D TPO 5 1_555 ? ? ? ? ? ? ? 1.337 sing covale3 covale ? ? B TPO 5 C ? ? ? 1_555 B MET 6 N ? ? D TPO 5 D MET 6 1_555 ? ? ? ? ? ? ? 1.329 sing covale4 covale ? ? B MET 6 C ? ? ? 1_555 B NH2 7 N ? ? D MET 6 D NH2 7 1_555 ? ? ? ? ? ? ? 1.330 sing # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 41 ? ASP A 46 ? VAL A 411 ASP A 416 A 2 GLY A 52 ? LEU A 57 ? GLY A 422 LEU A 427 A 3 VAL A 62 ? PHE A 66 ? VAL A 432 PHE A 436 A 4 ARG A 71 ? LEU A 74 ? ARG A 441 LEU A 444 A 5 SER A 80 ? ILE A 84 ? SER A 450 ILE A 454 A 6 GLU A 90 ? THR A 94 ? GLU A 460 THR A 464 B 1 LEU A 141 ? ARG A 146 ? LEU A 511 ARG A 516 B 2 ALA A 150 ? LEU A 155 ? ALA A 520 LEU A 525 B 3 VAL A 160 ? PHE A 164 ? VAL A 530 PHE A 534 B 4 LYS A 170 ? CYS A 174 ? LYS A 540 CYS A 544 B 5 ALA A 179 ? ILE A 183 ? ALA A 549 ILE A 553 B 6 PHE A 189 ? ARG A 193 ? PHE A 559 ARG A 563 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 45 ? N VAL A 415 O GLY A 54 ? O GLY A 424 A 2 3 N TYR A 55 ? N TYR A 425 O GLY A 63 ? O GLY A 433 A 3 4 N VAL A 62 ? N VAL A 432 O LEU A 74 ? O LEU A 444 A 4 5 N ARG A 71 ? N ARG A 441 O ILE A 84 ? O ILE A 454 A 5 6 N TYR A 83 ? N TYR A 453 O SER A 91 ? O SER A 461 B 1 2 N PHE A 145 ? N PHE A 515 O ILE A 152 ? O ILE A 522 B 2 3 N LEU A 153 ? N LEU A 523 O GLN A 161 ? O GLN A 531 B 3 4 N VAL A 160 ? N VAL A 530 O LEU A 173 ? O LEU A 543 B 4 5 N ILE A 172 ? N ILE A 542 O THR A 181 ? O THR A 551 B 5 6 N VAL A 180 ? N VAL A 550 O TYR A 192 ? O TYR A 562 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'BINDING SITE FOR CHAIN D OF PL-42' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 LYS A 43 ? LYS A 413 . ? 1_555 ? 2 AC1 17 TRP A 44 ? TRP A 414 . ? 1_555 ? 3 AC1 17 VAL A 45 ? VAL A 415 . ? 1_555 ? 4 AC1 17 ASP A 46 ? ASP A 416 . ? 1_555 ? 5 AC1 17 TYR A 115 ? TYR A 485 . ? 1_555 ? 6 AC1 17 HIS A 119 ? HIS A 489 . ? 1_555 ? 7 AC1 17 LEU A 120 ? LEU A 490 . ? 1_555 ? 8 AC1 17 LEU A 121 ? LEU A 491 . ? 1_555 ? 9 AC1 17 ARG A 146 ? ARG A 516 . ? 1_555 ? 10 AC1 17 PHE A 165 ? PHE A 535 . ? 1_555 ? 11 AC1 17 HIS A 168 ? HIS A 538 . ? 1_555 ? 12 AC1 17 LYS A 170 ? LYS A 540 . ? 1_555 ? 13 AC1 17 HOH C . ? HOH A 607 . ? 1_555 ? 14 AC1 17 HOH D . ? HOH D 101 . ? 1_555 ? 15 AC1 17 HOH D . ? HOH D 102 . ? 1_555 ? 16 AC1 17 HOH D . ? HOH D 103 . ? 1_555 ? 17 AC1 17 HOH D . ? HOH D 104 . ? 1_555 ? # _atom_sites.entry_id 4HY2 _atom_sites.fract_transf_matrix[1][1] 0.028209 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005739 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019897 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017760 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 371 ? ? ? A . n A 1 2 CYS 2 372 ? ? ? A . n A 1 3 HIS 3 373 373 HIS HIS A . n A 1 4 LEU 4 374 374 LEU LEU A . n A 1 5 SER 5 375 375 SER SER A . n A 1 6 ASP 6 376 376 ASP ASP A . n A 1 7 MET 7 377 377 MET MET A . n A 1 8 LEU 8 378 378 LEU LEU A . n A 1 9 GLN 9 379 379 GLN GLN A . n A 1 10 GLN 10 380 380 GLN GLN A . n A 1 11 LEU 11 381 381 LEU LEU A . n A 1 12 HIS 12 382 382 HIS HIS A . n A 1 13 SER 13 383 383 SER SER A . n A 1 14 VAL 14 384 384 VAL VAL A . n A 1 15 ASN 15 385 385 ASN ASN A . n A 1 16 ALA 16 386 386 ALA ALA A . n A 1 17 SER 17 387 387 SER SER A . n A 1 18 LYS 18 388 388 LYS LYS A . n A 1 19 PRO 19 389 389 PRO PRO A . n A 1 20 SER 20 390 390 SER SER A . n A 1 21 GLU 21 391 391 GLU GLU A . n A 1 22 ARG 22 392 392 ARG ARG A . n A 1 23 GLY 23 393 393 GLY GLY A . n A 1 24 LEU 24 394 394 LEU LEU A . n A 1 25 VAL 25 395 395 VAL VAL A . n A 1 26 ARG 26 396 396 ARG ARG A . n A 1 27 GLN 27 397 397 GLN GLN A . n A 1 28 GLU 28 398 398 GLU GLU A . n A 1 29 GLU 29 399 399 GLU GLU A . n A 1 30 ALA 30 400 400 ALA ALA A . n A 1 31 GLU 31 401 401 GLU GLU A . n A 1 32 ASP 32 402 402 ASP ASP A . n A 1 33 PRO 33 403 403 PRO PRO A . n A 1 34 ALA 34 404 404 ALA ALA A . n A 1 35 CYS 35 405 405 CYS CYS A . n A 1 36 ILE 36 406 406 ILE ILE A . n A 1 37 PRO 37 407 407 PRO PRO A . n A 1 38 ILE 38 408 408 ILE ILE A . n A 1 39 PHE 39 409 409 PHE PHE A . n A 1 40 TRP 40 410 410 TRP TRP A . n A 1 41 VAL 41 411 411 VAL VAL A . n A 1 42 SER 42 412 412 SER SER A . n A 1 43 LYS 43 413 413 LYS LYS A . n A 1 44 TRP 44 414 414 TRP TRP A . n A 1 45 VAL 45 415 415 VAL VAL A . n A 1 46 ASP 46 416 416 ASP ASP A . n A 1 47 TYR 47 417 417 TYR TYR A . n A 1 48 SER 48 418 418 SER SER A . n A 1 49 ASP 49 419 419 ASP ASP A . n A 1 50 LYS 50 420 420 LYS LYS A . n A 1 51 TYR 51 421 421 TYR TYR A . n A 1 52 GLY 52 422 422 GLY GLY A . n A 1 53 LEU 53 423 423 LEU LEU A . n A 1 54 GLY 54 424 424 GLY GLY A . n A 1 55 TYR 55 425 425 TYR TYR A . n A 1 56 GLN 56 426 426 GLN GLN A . n A 1 57 LEU 57 427 427 LEU LEU A . n A 1 58 CYS 58 428 428 CYS CYS A . n A 1 59 ASP 59 429 429 ASP ASP A . n A 1 60 ASN 60 430 430 ASN ASN A . n A 1 61 SER 61 431 431 SER SER A . n A 1 62 VAL 62 432 432 VAL VAL A . n A 1 63 GLY 63 433 433 GLY GLY A . n A 1 64 VAL 64 434 434 VAL VAL A . n A 1 65 LEU 65 435 435 LEU LEU A . n A 1 66 PHE 66 436 436 PHE PHE A . n A 1 67 ASN 67 437 437 ASN ASN A . n A 1 68 ASP 68 438 438 ASP ASP A . n A 1 69 SER 69 439 439 SER SER A . n A 1 70 THR 70 440 440 THR THR A . n A 1 71 ARG 71 441 441 ARG ARG A . n A 1 72 LEU 72 442 442 LEU LEU A . n A 1 73 ILE 73 443 443 ILE ILE A . n A 1 74 LEU 74 444 444 LEU LEU A . n A 1 75 TYR 75 445 445 TYR TYR A . n A 1 76 ASN 76 446 446 ASN ASN A . n A 1 77 ASP 77 447 447 ASP ASP A . n A 1 78 GLY 78 448 448 GLY GLY A . n A 1 79 ASP 79 449 449 ASP ASP A . n A 1 80 SER 80 450 450 SER SER A . n A 1 81 LEU 81 451 451 LEU LEU A . n A 1 82 GLN 82 452 452 GLN GLN A . n A 1 83 TYR 83 453 453 TYR TYR A . n A 1 84 ILE 84 454 454 ILE ILE A . n A 1 85 GLU 85 455 455 GLU GLU A . n A 1 86 ARG 86 456 456 ARG ARG A . n A 1 87 ASP 87 457 457 ASP ASP A . n A 1 88 GLY 88 458 458 GLY GLY A . n A 1 89 THR 89 459 459 THR THR A . n A 1 90 GLU 90 460 460 GLU GLU A . n A 1 91 SER 91 461 461 SER SER A . n A 1 92 TYR 92 462 462 TYR TYR A . n A 1 93 LEU 93 463 463 LEU LEU A . n A 1 94 THR 94 464 464 THR THR A . n A 1 95 VAL 95 465 465 VAL VAL A . n A 1 96 SER 96 466 466 SER SER A . n A 1 97 SER 97 467 467 SER SER A . n A 1 98 HIS 98 468 468 HIS HIS A . n A 1 99 PRO 99 469 469 PRO PRO A . n A 1 100 ASN 100 470 470 ASN ASN A . n A 1 101 SER 101 471 471 SER SER A . n A 1 102 LEU 102 472 472 LEU LEU A . n A 1 103 MET 103 473 473 MET MET A . n A 1 104 LYS 104 474 474 LYS LYS A . n A 1 105 LYS 105 475 475 LYS LYS A . n A 1 106 ILE 106 476 476 ILE ILE A . n A 1 107 THR 107 477 477 THR THR A . n A 1 108 LEU 108 478 478 LEU LEU A . n A 1 109 LEU 109 479 479 LEU LEU A . n A 1 110 LYS 110 480 480 LYS LYS A . n A 1 111 TYR 111 481 481 TYR TYR A . n A 1 112 PHE 112 482 482 PHE PHE A . n A 1 113 ARG 113 483 483 ARG ARG A . n A 1 114 ASN 114 484 484 ASN ASN A . n A 1 115 TYR 115 485 485 TYR TYR A . n A 1 116 MET 116 486 486 MET MET A . n A 1 117 SER 117 487 487 SER SER A . n A 1 118 GLU 118 488 488 GLU GLU A . n A 1 119 HIS 119 489 489 HIS HIS A . n A 1 120 LEU 120 490 490 LEU LEU A . n A 1 121 LEU 121 491 491 LEU LEU A . n A 1 122 LYS 122 492 492 LYS LYS A . n A 1 123 ALA 123 493 493 ALA ALA A . n A 1 124 GLY 124 494 494 GLY GLY A . n A 1 125 ALA 125 495 495 ALA ALA A . n A 1 126 ASN 126 496 496 ASN ASN A . n A 1 127 ILE 127 497 497 ILE ILE A . n A 1 128 THR 128 498 498 THR THR A . n A 1 129 PRO 129 499 499 PRO PRO A . n A 1 130 ARG 130 500 ? ? ? A . n A 1 131 GLU 131 501 ? ? ? A . n A 1 132 GLY 132 502 ? ? ? A . n A 1 133 ASP 133 503 ? ? ? A . n A 1 134 GLU 134 504 ? ? ? A . n A 1 135 LEU 135 505 ? ? ? A . n A 1 136 ALA 136 506 ? ? ? A . n A 1 137 ARG 137 507 ? ? ? A . n A 1 138 LEU 138 508 508 LEU LEU A . n A 1 139 PRO 139 509 509 PRO PRO A . n A 1 140 TYR 140 510 510 TYR TYR A . n A 1 141 LEU 141 511 511 LEU LEU A . n A 1 142 ARG 142 512 512 ARG ARG A . n A 1 143 THR 143 513 513 THR THR A . n A 1 144 TRP 144 514 514 TRP TRP A . n A 1 145 PHE 145 515 515 PHE PHE A . n A 1 146 ARG 146 516 516 ARG ARG A . n A 1 147 THR 147 517 517 THR THR A . n A 1 148 ARG 148 518 518 ARG ARG A . n A 1 149 SER 149 519 519 SER SER A . n A 1 150 ALA 150 520 520 ALA ALA A . n A 1 151 ILE 151 521 521 ILE ILE A . n A 1 152 ILE 152 522 522 ILE ILE A . n A 1 153 LEU 153 523 523 LEU LEU A . n A 1 154 HIS 154 524 524 HIS HIS A . n A 1 155 LEU 155 525 525 LEU LEU A . n A 1 156 SER 156 526 526 SER SER A . n A 1 157 ASN 157 527 527 ASN ASN A . n A 1 158 GLY 158 528 528 GLY GLY A . n A 1 159 SER 159 529 529 SER SER A . n A 1 160 VAL 160 530 530 VAL VAL A . n A 1 161 GLN 161 531 531 GLN GLN A . n A 1 162 ILE 162 532 532 ILE ILE A . n A 1 163 ASN 163 533 533 ASN ASN A . n A 1 164 PHE 164 534 534 PHE PHE A . n A 1 165 PHE 165 535 535 PHE PHE A . n A 1 166 GLN 166 536 536 GLN GLN A . n A 1 167 ASP 167 537 537 ASP ASP A . n A 1 168 HIS 168 538 538 HIS HIS A . n A 1 169 THR 169 539 539 THR THR A . n A 1 170 LYS 170 540 540 LYS LYS A . n A 1 171 LEU 171 541 541 LEU LEU A . n A 1 172 ILE 172 542 542 ILE ILE A . n A 1 173 LEU 173 543 543 LEU LEU A . n A 1 174 CYS 174 544 544 CYS CYS A . n A 1 175 PRO 175 545 545 PRO PRO A . n A 1 176 LEU 176 546 546 LEU LEU A . n A 1 177 MET 177 547 547 MET MET A . n A 1 178 ALA 178 548 548 ALA ALA A . n A 1 179 ALA 179 549 549 ALA ALA A . n A 1 180 VAL 180 550 550 VAL VAL A . n A 1 181 THR 181 551 551 THR THR A . n A 1 182 TYR 182 552 552 TYR TYR A . n A 1 183 ILE 183 553 553 ILE ILE A . n A 1 184 ASP 184 554 554 ASP ASP A . n A 1 185 GLU 185 555 555 GLU GLU A . n A 1 186 LYS 186 556 556 LYS LYS A . n A 1 187 ARG 187 557 557 ARG ARG A . n A 1 188 ASP 188 558 558 ASP ASP A . n A 1 189 PHE 189 559 559 PHE PHE A . n A 1 190 ARG 190 560 560 ARG ARG A . n A 1 191 THR 191 561 561 THR THR A . n A 1 192 TYR 192 562 562 TYR TYR A . n A 1 193 ARG 193 563 563 ARG ARG A . n A 1 194 LEU 194 564 564 LEU LEU A . n A 1 195 SER 195 565 565 SER SER A . n A 1 196 LEU 196 566 566 LEU LEU A . n A 1 197 LEU 197 567 567 LEU LEU A . n A 1 198 GLU 198 568 568 GLU GLU A . n A 1 199 GLU 199 569 569 GLU GLU A . n A 1 200 TYR 200 570 570 TYR TYR A . n A 1 201 GLY 201 571 571 GLY GLY A . n A 1 202 CYS 202 572 572 CYS CYS A . n A 1 203 CYS 203 573 573 CYS CYS A . n A 1 204 LYS 204 574 574 LYS LYS A . n A 1 205 GLU 205 575 575 GLU GLU A . n A 1 206 LEU 206 576 576 LEU LEU A . n A 1 207 ALA 207 577 577 ALA ALA A . n A 1 208 SER 208 578 578 SER SER A . n A 1 209 ARG 209 579 579 ARG ARG A . n A 1 210 LEU 210 580 580 LEU LEU A . n A 1 211 ARG 211 581 581 ARG ARG A . n A 1 212 TYR 212 582 582 TYR TYR A . n A 1 213 ALA 213 583 583 ALA ALA A . n A 1 214 ARG 214 584 584 ARG ARG A . n A 1 215 THR 215 585 585 THR THR A . n A 1 216 MET 216 586 586 MET MET A . n A 1 217 VAL 217 587 587 VAL VAL A . n A 1 218 ASP 218 588 588 ASP ASP A . n A 1 219 LYS 219 589 589 LYS LYS A . n A 1 220 LEU 220 590 590 LEU LEU A . n A 1 221 LEU 221 591 591 LEU LEU A . n A 1 222 SER 222 592 592 SER SER A . n A 1 223 SER 223 593 593 SER SER A . n A 1 224 ARG 224 594 594 ARG ARG A . n A 1 225 SER 225 595 595 SER SER A . n B 2 1 1C3 1 1 1 1C3 1C3 D . n B 2 2 LEU 2 2 2 LEU LEU D . n B 2 3 HIS 3 3 3 HIS HIS D . n B 2 4 SER 4 4 4 SER SER D . n B 2 5 TPO 5 5 5 TPO TPO D . n B 2 6 MET 6 6 6 MET MET D . n B 2 7 NH2 7 7 7 NH2 NH2 D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 601 2 HOH HOH A . C 3 HOH 2 602 4 HOH HOH A . C 3 HOH 3 603 5 HOH HOH A . C 3 HOH 4 604 6 HOH HOH A . C 3 HOH 5 605 8 HOH HOH A . C 3 HOH 6 606 9 HOH HOH A . C 3 HOH 7 607 12 HOH HOH A . C 3 HOH 8 608 13 HOH HOH A . C 3 HOH 9 609 14 HOH HOH A . C 3 HOH 10 610 16 HOH HOH A . C 3 HOH 11 611 17 HOH HOH A . C 3 HOH 12 612 18 HOH HOH A . C 3 HOH 13 613 19 HOH HOH A . C 3 HOH 14 614 20 HOH HOH A . C 3 HOH 15 615 23 HOH HOH A . C 3 HOH 16 616 24 HOH HOH A . C 3 HOH 17 617 25 HOH HOH A . C 3 HOH 18 618 26 HOH HOH A . C 3 HOH 19 619 27 HOH HOH A . C 3 HOH 20 620 28 HOH HOH A . C 3 HOH 21 621 29 HOH HOH A . C 3 HOH 22 622 30 HOH HOH A . C 3 HOH 23 623 34 HOH HOH A . C 3 HOH 24 624 39 HOH HOH A . C 3 HOH 25 625 40 HOH HOH A . C 3 HOH 26 626 41 HOH HOH A . C 3 HOH 27 627 43 HOH HOH A . C 3 HOH 28 628 46 HOH HOH A . C 3 HOH 29 629 47 HOH HOH A . C 3 HOH 30 630 48 HOH HOH A . C 3 HOH 31 631 49 HOH HOH A . C 3 HOH 32 632 53 HOH HOH A . C 3 HOH 33 633 54 HOH HOH A . C 3 HOH 34 634 55 HOH HOH A . C 3 HOH 35 635 56 HOH HOH A . C 3 HOH 36 636 63 HOH HOH A . C 3 HOH 37 637 65 HOH HOH A . C 3 HOH 38 638 66 HOH HOH A . C 3 HOH 39 639 69 HOH HOH A . C 3 HOH 40 640 72 HOH HOH A . C 3 HOH 41 641 73 HOH HOH A . C 3 HOH 42 642 74 HOH HOH A . C 3 HOH 43 643 75 HOH HOH A . C 3 HOH 44 644 77 HOH HOH A . C 3 HOH 45 645 78 HOH HOH A . C 3 HOH 46 646 79 HOH HOH A . C 3 HOH 47 647 80 HOH HOH A . C 3 HOH 48 648 81 HOH HOH A . C 3 HOH 49 649 82 HOH HOH A . C 3 HOH 50 650 83 HOH HOH A . C 3 HOH 51 651 84 HOH HOH A . C 3 HOH 52 652 85 HOH HOH A . C 3 HOH 53 653 86 HOH HOH A . C 3 HOH 54 654 87 HOH HOH A . C 3 HOH 55 655 88 HOH HOH A . C 3 HOH 56 656 89 HOH HOH A . C 3 HOH 57 657 90 HOH HOH A . C 3 HOH 58 658 91 HOH HOH A . C 3 HOH 59 659 92 HOH HOH A . C 3 HOH 60 660 93 HOH HOH A . C 3 HOH 61 661 94 HOH HOH A . C 3 HOH 62 662 95 HOH HOH A . C 3 HOH 63 663 96 HOH HOH A . C 3 HOH 64 664 97 HOH HOH A . C 3 HOH 65 665 98 HOH HOH A . C 3 HOH 66 666 99 HOH HOH A . C 3 HOH 67 667 100 HOH HOH A . C 3 HOH 68 668 101 HOH HOH A . C 3 HOH 69 669 102 HOH HOH A . C 3 HOH 70 670 103 HOH HOH A . C 3 HOH 71 671 104 HOH HOH A . C 3 HOH 72 672 105 HOH HOH A . C 3 HOH 73 673 106 HOH HOH A . D 3 HOH 1 101 7 HOH HOH D . D 3 HOH 2 102 33 HOH HOH D . D 3 HOH 3 103 36 HOH HOH D . D 3 HOH 4 104 64 HOH HOH D . D 3 HOH 5 105 67 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000922 _pdbx_molecule_features.name PL-42 _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000922 _pdbx_molecule.asym_id B # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id TPO _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id D _pdbx_struct_mod_residue.auth_comp_id TPO _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details PHOSPHOTHREONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1120 ? 1 MORE -6 ? 1 'SSA (A^2)' 10990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-03 2 'Structure model' 1 1 2013-05-22 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 3 'Structure model' '_software.classification' 4 3 'Structure model' '_software.name' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 SERGUI . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 391 ? ? -43.96 -70.84 2 1 ARG A 396 ? ? -119.13 57.39 3 1 TYR A 421 ? ? -121.75 -52.36 4 1 ASP A 449 ? ? -136.32 -41.39 5 1 GLU A 455 ? ? -69.05 -178.54 6 1 ASP A 457 ? ? -85.63 30.81 7 1 THR A 459 ? ? -47.32 96.78 8 1 LEU A 463 ? ? -176.09 -165.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 371 ? A ASP 1 2 1 Y 1 A CYS 372 ? A CYS 2 3 1 Y 1 A ARG 500 ? A ARG 130 4 1 Y 1 A GLU 501 ? A GLU 131 5 1 Y 1 A GLY 502 ? A GLY 132 6 1 Y 1 A ASP 503 ? A ASP 133 7 1 Y 1 A GLU 504 ? A GLU 134 8 1 Y 1 A LEU 505 ? A LEU 135 9 1 Y 1 A ALA 506 ? A ALA 136 10 1 Y 1 A ARG 507 ? A ARG 137 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #