data_4HYZ # _entry.id 4HYZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HYZ pdb_00004hyz 10.2210/pdb4hyz/pdb RCSB RCSB076095 ? ? WWPDB D_1000076095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-09 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 10 5 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4HYZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-11-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417405 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (RUMGNA_01855) from Ruminococcus gnavus ATCC 29149 at 2.25 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 13421.566 2 ? ? 'UNP residues 36-148' ? 2 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 6 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 8 ? ? ? ? 5 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEILKELPEGFDKETVRKQA(MSE)EDIEIAQSKDYESWKSRFTKDLQSSLTEESYDSYLKILEKQGEFKEFGKCTYLGQ IKDNKKYGGVIIVVKYEEGNVNYSLAYDED(MSE)NLVSFT(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;GEILKELPEGFDKETVRKQAMEDIEIAQSKDYESWKSRFTKDLQSSLTEESYDSYLKILEKQGEFKEFGKCTYLGQIKDN KKYGGVIIVVKYEEGNVNYSLAYDEDMNLVSFTM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-417405 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 GLYCEROL GOL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ILE n 1 4 LEU n 1 5 LYS n 1 6 GLU n 1 7 LEU n 1 8 PRO n 1 9 GLU n 1 10 GLY n 1 11 PHE n 1 12 ASP n 1 13 LYS n 1 14 GLU n 1 15 THR n 1 16 VAL n 1 17 ARG n 1 18 LYS n 1 19 GLN n 1 20 ALA n 1 21 MSE n 1 22 GLU n 1 23 ASP n 1 24 ILE n 1 25 GLU n 1 26 ILE n 1 27 ALA n 1 28 GLN n 1 29 SER n 1 30 LYS n 1 31 ASP n 1 32 TYR n 1 33 GLU n 1 34 SER n 1 35 TRP n 1 36 LYS n 1 37 SER n 1 38 ARG n 1 39 PHE n 1 40 THR n 1 41 LYS n 1 42 ASP n 1 43 LEU n 1 44 GLN n 1 45 SER n 1 46 SER n 1 47 LEU n 1 48 THR n 1 49 GLU n 1 50 GLU n 1 51 SER n 1 52 TYR n 1 53 ASP n 1 54 SER n 1 55 TYR n 1 56 LEU n 1 57 LYS n 1 58 ILE n 1 59 LEU n 1 60 GLU n 1 61 LYS n 1 62 GLN n 1 63 GLY n 1 64 GLU n 1 65 PHE n 1 66 LYS n 1 67 GLU n 1 68 PHE n 1 69 GLY n 1 70 LYS n 1 71 CYS n 1 72 THR n 1 73 TYR n 1 74 LEU n 1 75 GLY n 1 76 GLN n 1 77 ILE n 1 78 LYS n 1 79 ASP n 1 80 ASN n 1 81 LYS n 1 82 LYS n 1 83 TYR n 1 84 GLY n 1 85 GLY n 1 86 VAL n 1 87 ILE n 1 88 ILE n 1 89 VAL n 1 90 VAL n 1 91 LYS n 1 92 TYR n 1 93 GLU n 1 94 GLU n 1 95 GLY n 1 96 ASN n 1 97 VAL n 1 98 ASN n 1 99 TYR n 1 100 SER n 1 101 LEU n 1 102 ALA n 1 103 TYR n 1 104 ASP n 1 105 GLU n 1 106 ASP n 1 107 MSE n 1 108 ASN n 1 109 LEU n 1 110 VAL n 1 111 SER n 1 112 PHE n 1 113 THR n 1 114 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ruminococcus gnavus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411470 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 29149 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 GLU 2 37 37 GLU GLU A . n A 1 3 ILE 3 38 38 ILE ILE A . n A 1 4 LEU 4 39 39 LEU LEU A . n A 1 5 LYS 5 40 40 LYS LYS A . n A 1 6 GLU 6 41 41 GLU GLU A . n A 1 7 LEU 7 42 42 LEU LEU A . n A 1 8 PRO 8 43 43 PRO PRO A . n A 1 9 GLU 9 44 44 GLU GLU A . n A 1 10 GLY 10 45 45 GLY GLY A . n A 1 11 PHE 11 46 46 PHE PHE A . n A 1 12 ASP 12 47 47 ASP ASP A . n A 1 13 LYS 13 48 48 LYS LYS A . n A 1 14 GLU 14 49 49 GLU GLU A . n A 1 15 THR 15 50 50 THR THR A . n A 1 16 VAL 16 51 51 VAL VAL A . n A 1 17 ARG 17 52 52 ARG ARG A . n A 1 18 LYS 18 53 53 LYS LYS A . n A 1 19 GLN 19 54 54 GLN GLN A . n A 1 20 ALA 20 55 55 ALA ALA A . n A 1 21 MSE 21 56 56 MSE MSE A . n A 1 22 GLU 22 57 57 GLU GLU A . n A 1 23 ASP 23 58 58 ASP ASP A . n A 1 24 ILE 24 59 59 ILE ILE A . n A 1 25 GLU 25 60 60 GLU GLU A . n A 1 26 ILE 26 61 61 ILE ILE A . n A 1 27 ALA 27 62 62 ALA ALA A . n A 1 28 GLN 28 63 63 GLN GLN A . n A 1 29 SER 29 64 64 SER SER A . n A 1 30 LYS 30 65 65 LYS LYS A . n A 1 31 ASP 31 66 66 ASP ASP A . n A 1 32 TYR 32 67 67 TYR TYR A . n A 1 33 GLU 33 68 68 GLU GLU A . n A 1 34 SER 34 69 69 SER SER A . n A 1 35 TRP 35 70 70 TRP TRP A . n A 1 36 LYS 36 71 71 LYS LYS A . n A 1 37 SER 37 72 72 SER SER A . n A 1 38 ARG 38 73 73 ARG ARG A . n A 1 39 PHE 39 74 74 PHE PHE A . n A 1 40 THR 40 75 75 THR THR A . n A 1 41 LYS 41 76 76 LYS LYS A . n A 1 42 ASP 42 77 77 ASP ASP A . n A 1 43 LEU 43 78 78 LEU LEU A . n A 1 44 GLN 44 79 79 GLN GLN A . n A 1 45 SER 45 80 80 SER SER A . n A 1 46 SER 46 81 81 SER SER A . n A 1 47 LEU 47 82 82 LEU LEU A . n A 1 48 THR 48 83 83 THR THR A . n A 1 49 GLU 49 84 84 GLU GLU A . n A 1 50 GLU 50 85 85 GLU GLU A . n A 1 51 SER 51 86 86 SER SER A . n A 1 52 TYR 52 87 87 TYR TYR A . n A 1 53 ASP 53 88 88 ASP ASP A . n A 1 54 SER 54 89 89 SER SER A . n A 1 55 TYR 55 90 90 TYR TYR A . n A 1 56 LEU 56 91 91 LEU LEU A . n A 1 57 LYS 57 92 92 LYS LYS A . n A 1 58 ILE 58 93 93 ILE ILE A . n A 1 59 LEU 59 94 94 LEU LEU A . n A 1 60 GLU 60 95 95 GLU GLU A . n A 1 61 LYS 61 96 96 LYS LYS A . n A 1 62 GLN 62 97 97 GLN GLN A . n A 1 63 GLY 63 98 98 GLY GLY A . n A 1 64 GLU 64 99 99 GLU GLU A . n A 1 65 PHE 65 100 100 PHE PHE A . n A 1 66 LYS 66 101 101 LYS LYS A . n A 1 67 GLU 67 102 102 GLU GLU A . n A 1 68 PHE 68 103 103 PHE PHE A . n A 1 69 GLY 69 104 104 GLY GLY A . n A 1 70 LYS 70 105 105 LYS LYS A . n A 1 71 CYS 71 106 106 CYS CYS A . n A 1 72 THR 72 107 107 THR THR A . n A 1 73 TYR 73 108 108 TYR TYR A . n A 1 74 LEU 74 109 109 LEU LEU A . n A 1 75 GLY 75 110 110 GLY GLY A . n A 1 76 GLN 76 111 111 GLN GLN A . n A 1 77 ILE 77 112 112 ILE ILE A . n A 1 78 LYS 78 113 113 LYS LYS A . n A 1 79 ASP 79 114 114 ASP ASP A . n A 1 80 ASN 80 115 115 ASN ASN A . n A 1 81 LYS 81 116 116 LYS LYS A . n A 1 82 LYS 82 117 117 LYS LYS A . n A 1 83 TYR 83 118 118 TYR TYR A . n A 1 84 GLY 84 119 119 GLY GLY A . n A 1 85 GLY 85 120 120 GLY GLY A . n A 1 86 VAL 86 121 121 VAL VAL A . n A 1 87 ILE 87 122 122 ILE ILE A . n A 1 88 ILE 88 123 123 ILE ILE A . n A 1 89 VAL 89 124 124 VAL VAL A . n A 1 90 VAL 90 125 125 VAL VAL A . n A 1 91 LYS 91 126 126 LYS LYS A . n A 1 92 TYR 92 127 127 TYR TYR A . n A 1 93 GLU 93 128 128 GLU GLU A . n A 1 94 GLU 94 129 129 GLU GLU A . n A 1 95 GLY 95 130 130 GLY GLY A . n A 1 96 ASN 96 131 131 ASN ASN A . n A 1 97 VAL 97 132 132 VAL VAL A . n A 1 98 ASN 98 133 133 ASN ASN A . n A 1 99 TYR 99 134 134 TYR TYR A . n A 1 100 SER 100 135 135 SER SER A . n A 1 101 LEU 101 136 136 LEU LEU A . n A 1 102 ALA 102 137 137 ALA ALA A . n A 1 103 TYR 103 138 138 TYR TYR A . n A 1 104 ASP 104 139 139 ASP ASP A . n A 1 105 GLU 105 140 140 GLU GLU A . n A 1 106 ASP 106 141 141 ASP ASP A . n A 1 107 MSE 107 142 142 MSE MSE A . n A 1 108 ASN 108 143 143 ASN ASN A . n A 1 109 LEU 109 144 144 LEU LEU A . n A 1 110 VAL 110 145 145 VAL VAL A . n A 1 111 SER 111 146 146 SER SER A . n A 1 112 PHE 112 147 147 PHE PHE A . n A 1 113 THR 113 148 148 THR THR A . n A 1 114 MSE 114 149 149 MSE MSE A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 GLU 2 37 37 GLU GLU B . n B 1 3 ILE 3 38 38 ILE ILE B . n B 1 4 LEU 4 39 39 LEU LEU B . n B 1 5 LYS 5 40 40 LYS LYS B . n B 1 6 GLU 6 41 41 GLU GLU B . n B 1 7 LEU 7 42 42 LEU LEU B . n B 1 8 PRO 8 43 43 PRO PRO B . n B 1 9 GLU 9 44 44 GLU GLU B . n B 1 10 GLY 10 45 45 GLY GLY B . n B 1 11 PHE 11 46 46 PHE PHE B . n B 1 12 ASP 12 47 47 ASP ASP B . n B 1 13 LYS 13 48 48 LYS LYS B . n B 1 14 GLU 14 49 49 GLU GLU B . n B 1 15 THR 15 50 50 THR THR B . n B 1 16 VAL 16 51 51 VAL VAL B . n B 1 17 ARG 17 52 52 ARG ARG B . n B 1 18 LYS 18 53 53 LYS LYS B . n B 1 19 GLN 19 54 54 GLN GLN B . n B 1 20 ALA 20 55 55 ALA ALA B . n B 1 21 MSE 21 56 56 MSE MSE B . n B 1 22 GLU 22 57 57 GLU GLU B . n B 1 23 ASP 23 58 58 ASP ASP B . n B 1 24 ILE 24 59 59 ILE ILE B . n B 1 25 GLU 25 60 60 GLU GLU B . n B 1 26 ILE 26 61 61 ILE ILE B . n B 1 27 ALA 27 62 62 ALA ALA B . n B 1 28 GLN 28 63 63 GLN GLN B . n B 1 29 SER 29 64 64 SER SER B . n B 1 30 LYS 30 65 65 LYS LYS B . n B 1 31 ASP 31 66 66 ASP ASP B . n B 1 32 TYR 32 67 67 TYR TYR B . n B 1 33 GLU 33 68 68 GLU GLU B . n B 1 34 SER 34 69 69 SER SER B . n B 1 35 TRP 35 70 70 TRP TRP B . n B 1 36 LYS 36 71 71 LYS LYS B . n B 1 37 SER 37 72 72 SER SER B . n B 1 38 ARG 38 73 73 ARG ARG B . n B 1 39 PHE 39 74 74 PHE PHE B . n B 1 40 THR 40 75 75 THR THR B . n B 1 41 LYS 41 76 76 LYS LYS B . n B 1 42 ASP 42 77 77 ASP ASP B . n B 1 43 LEU 43 78 78 LEU LEU B . n B 1 44 GLN 44 79 79 GLN GLN B . n B 1 45 SER 45 80 80 SER SER B . n B 1 46 SER 46 81 81 SER SER B . n B 1 47 LEU 47 82 82 LEU LEU B . n B 1 48 THR 48 83 83 THR THR B . n B 1 49 GLU 49 84 84 GLU GLU B . n B 1 50 GLU 50 85 85 GLU GLU B . n B 1 51 SER 51 86 86 SER SER B . n B 1 52 TYR 52 87 87 TYR TYR B . n B 1 53 ASP 53 88 88 ASP ASP B . n B 1 54 SER 54 89 89 SER SER B . n B 1 55 TYR 55 90 90 TYR TYR B . n B 1 56 LEU 56 91 91 LEU LEU B . n B 1 57 LYS 57 92 92 LYS LYS B . n B 1 58 ILE 58 93 93 ILE ILE B . n B 1 59 LEU 59 94 94 LEU LEU B . n B 1 60 GLU 60 95 95 GLU GLU B . n B 1 61 LYS 61 96 96 LYS LYS B . n B 1 62 GLN 62 97 97 GLN GLN B . n B 1 63 GLY 63 98 98 GLY GLY B . n B 1 64 GLU 64 99 99 GLU GLU B . n B 1 65 PHE 65 100 100 PHE PHE B . n B 1 66 LYS 66 101 101 LYS LYS B . n B 1 67 GLU 67 102 102 GLU GLU B . n B 1 68 PHE 68 103 103 PHE PHE B . n B 1 69 GLY 69 104 104 GLY GLY B . n B 1 70 LYS 70 105 105 LYS LYS B . n B 1 71 CYS 71 106 106 CYS CYS B . n B 1 72 THR 72 107 107 THR THR B . n B 1 73 TYR 73 108 108 TYR TYR B . n B 1 74 LEU 74 109 109 LEU LEU B . n B 1 75 GLY 75 110 110 GLY GLY B . n B 1 76 GLN 76 111 111 GLN GLN B . n B 1 77 ILE 77 112 112 ILE ILE B . n B 1 78 LYS 78 113 113 LYS LYS B . n B 1 79 ASP 79 114 114 ASP ASP B . n B 1 80 ASN 80 115 115 ASN ASN B . n B 1 81 LYS 81 116 116 LYS LYS B . n B 1 82 LYS 82 117 117 LYS LYS B . n B 1 83 TYR 83 118 118 TYR TYR B . n B 1 84 GLY 84 119 119 GLY GLY B . n B 1 85 GLY 85 120 120 GLY GLY B . n B 1 86 VAL 86 121 121 VAL VAL B . n B 1 87 ILE 87 122 122 ILE ILE B . n B 1 88 ILE 88 123 123 ILE ILE B . n B 1 89 VAL 89 124 124 VAL VAL B . n B 1 90 VAL 90 125 125 VAL VAL B . n B 1 91 LYS 91 126 126 LYS LYS B . n B 1 92 TYR 92 127 127 TYR TYR B . n B 1 93 GLU 93 128 128 GLU GLU B . n B 1 94 GLU 94 129 129 GLU GLU B . n B 1 95 GLY 95 130 130 GLY GLY B . n B 1 96 ASN 96 131 131 ASN ASN B . n B 1 97 VAL 97 132 132 VAL VAL B . n B 1 98 ASN 98 133 133 ASN ASN B . n B 1 99 TYR 99 134 134 TYR TYR B . n B 1 100 SER 100 135 135 SER SER B . n B 1 101 LEU 101 136 136 LEU LEU B . n B 1 102 ALA 102 137 137 ALA ALA B . n B 1 103 TYR 103 138 138 TYR TYR B . n B 1 104 ASP 104 139 139 ASP ASP B . n B 1 105 GLU 105 140 140 GLU GLU B . n B 1 106 ASP 106 141 141 ASP ASP B . n B 1 107 MSE 107 142 142 MSE MSE B . n B 1 108 ASN 108 143 143 ASN ASN B . n B 1 109 LEU 109 144 144 LEU LEU B . n B 1 110 VAL 110 145 145 VAL VAL B . n B 1 111 SER 111 146 146 SER SER B . n B 1 112 PHE 112 147 147 PHE PHE B . n B 1 113 THR 113 148 148 THR THR B . n B 1 114 MSE 114 149 149 MSE MSE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 201 150 SO4 SO4 A . D 2 SO4 1 202 152 SO4 SO4 A . E 3 CL 1 203 156 CL CL A . F 3 CL 1 204 159 CL CL A . G 4 GOL 1 205 162 GOL GOL A . H 4 GOL 1 206 165 GOL GOL A . I 4 GOL 1 207 166 GOL GOL A . J 4 GOL 1 208 168 GOL GOL A . K 2 SO4 1 201 151 SO4 SO4 B . L 2 SO4 1 202 153 SO4 SO4 B . M 2 SO4 1 203 154 SO4 SO4 B . N 2 SO4 1 204 155 SO4 SO4 B . O 3 CL 1 205 157 CL CL B . P 3 CL 1 206 158 CL CL B . Q 3 CL 1 207 160 CL CL B . R 3 CL 1 208 161 CL CL B . S 4 GOL 1 209 163 GOL GOL B . T 4 GOL 1 210 164 GOL GOL B . U 4 GOL 1 211 167 GOL GOL B . V 4 GOL 1 212 169 GOL GOL B . W 5 HOH 1 301 170 HOH HOH A . W 5 HOH 2 302 171 HOH HOH A . W 5 HOH 3 303 172 HOH HOH A . W 5 HOH 4 304 173 HOH HOH A . W 5 HOH 5 305 174 HOH HOH A . W 5 HOH 6 306 175 HOH HOH A . W 5 HOH 7 307 176 HOH HOH A . W 5 HOH 8 308 177 HOH HOH A . W 5 HOH 9 309 178 HOH HOH A . W 5 HOH 10 310 179 HOH HOH A . W 5 HOH 11 311 180 HOH HOH A . W 5 HOH 12 312 181 HOH HOH A . W 5 HOH 13 313 182 HOH HOH A . W 5 HOH 14 314 183 HOH HOH A . W 5 HOH 15 315 184 HOH HOH A . W 5 HOH 16 316 185 HOH HOH A . W 5 HOH 17 317 186 HOH HOH A . W 5 HOH 18 318 187 HOH HOH A . W 5 HOH 19 319 188 HOH HOH A . W 5 HOH 20 320 189 HOH HOH A . W 5 HOH 21 321 190 HOH HOH A . W 5 HOH 22 322 191 HOH HOH A . W 5 HOH 23 323 192 HOH HOH A . W 5 HOH 24 324 193 HOH HOH A . W 5 HOH 25 325 206 HOH HOH A . W 5 HOH 26 326 207 HOH HOH A . W 5 HOH 27 327 208 HOH HOH A . W 5 HOH 28 328 209 HOH HOH A . W 5 HOH 29 329 210 HOH HOH A . W 5 HOH 30 330 211 HOH HOH A . W 5 HOH 31 331 212 HOH HOH A . W 5 HOH 32 332 215 HOH HOH A . W 5 HOH 33 333 216 HOH HOH A . W 5 HOH 34 334 218 HOH HOH A . W 5 HOH 35 335 221 HOH HOH A . W 5 HOH 36 336 222 HOH HOH A . W 5 HOH 37 337 223 HOH HOH A . W 5 HOH 38 338 228 HOH HOH A . W 5 HOH 39 339 229 HOH HOH A . W 5 HOH 40 340 232 HOH HOH A . W 5 HOH 41 341 233 HOH HOH A . W 5 HOH 42 342 234 HOH HOH A . W 5 HOH 43 343 235 HOH HOH A . W 5 HOH 44 344 236 HOH HOH A . W 5 HOH 45 345 237 HOH HOH A . W 5 HOH 46 346 238 HOH HOH A . W 5 HOH 47 347 239 HOH HOH A . W 5 HOH 48 348 240 HOH HOH A . W 5 HOH 49 349 241 HOH HOH A . W 5 HOH 50 350 242 HOH HOH A . W 5 HOH 51 351 243 HOH HOH A . W 5 HOH 52 352 244 HOH HOH A . W 5 HOH 53 353 245 HOH HOH A . W 5 HOH 54 354 246 HOH HOH A . W 5 HOH 55 355 247 HOH HOH A . W 5 HOH 56 356 248 HOH HOH A . W 5 HOH 57 357 249 HOH HOH A . W 5 HOH 58 358 250 HOH HOH A . W 5 HOH 59 359 251 HOH HOH A . W 5 HOH 60 360 252 HOH HOH A . W 5 HOH 61 361 253 HOH HOH A . W 5 HOH 62 362 254 HOH HOH A . W 5 HOH 63 363 255 HOH HOH A . W 5 HOH 64 364 256 HOH HOH A . W 5 HOH 65 365 263 HOH HOH A . W 5 HOH 66 366 265 HOH HOH A . W 5 HOH 67 367 266 HOH HOH A . W 5 HOH 68 368 268 HOH HOH A . X 5 HOH 1 301 194 HOH HOH B . X 5 HOH 2 302 195 HOH HOH B . X 5 HOH 3 303 196 HOH HOH B . X 5 HOH 4 304 197 HOH HOH B . X 5 HOH 5 305 198 HOH HOH B . X 5 HOH 6 306 199 HOH HOH B . X 5 HOH 7 307 200 HOH HOH B . X 5 HOH 8 308 201 HOH HOH B . X 5 HOH 9 309 202 HOH HOH B . X 5 HOH 10 310 203 HOH HOH B . X 5 HOH 11 311 204 HOH HOH B . X 5 HOH 12 312 205 HOH HOH B . X 5 HOH 13 313 213 HOH HOH B . X 5 HOH 14 314 214 HOH HOH B . X 5 HOH 15 315 217 HOH HOH B . X 5 HOH 16 316 219 HOH HOH B . X 5 HOH 17 317 220 HOH HOH B . X 5 HOH 18 318 224 HOH HOH B . X 5 HOH 19 319 225 HOH HOH B . X 5 HOH 20 320 226 HOH HOH B . X 5 HOH 21 321 227 HOH HOH B . X 5 HOH 22 322 230 HOH HOH B . X 5 HOH 23 323 231 HOH HOH B . X 5 HOH 24 324 257 HOH HOH B . X 5 HOH 25 325 258 HOH HOH B . X 5 HOH 26 326 259 HOH HOH B . X 5 HOH 27 327 260 HOH HOH B . X 5 HOH 28 328 261 HOH HOH B . X 5 HOH 29 329 262 HOH HOH B . X 5 HOH 30 330 264 HOH HOH B . X 5 HOH 31 331 267 HOH HOH B . X 5 HOH 32 332 269 HOH HOH B . X 5 HOH 33 333 270 HOH HOH B . X 5 HOH 34 334 271 HOH HOH B . X 5 HOH 35 335 272 HOH HOH B . X 5 HOH 36 336 273 HOH HOH B . X 5 HOH 37 337 274 HOH HOH B . X 5 HOH 38 338 275 HOH HOH B . X 5 HOH 39 339 276 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 44 ? CG ? A GLU 9 CG 2 1 Y 1 A GLU 44 ? CD ? A GLU 9 CD 3 1 Y 1 A GLU 44 ? OE1 ? A GLU 9 OE1 4 1 Y 1 A GLU 44 ? OE2 ? A GLU 9 OE2 5 1 Y 1 A GLU 85 ? CG ? A GLU 50 CG 6 1 Y 1 A GLU 85 ? CD ? A GLU 50 CD 7 1 Y 1 A GLU 85 ? OE1 ? A GLU 50 OE1 8 1 Y 1 A GLU 85 ? OE2 ? A GLU 50 OE2 9 1 Y 1 A LYS 92 ? CD ? A LYS 57 CD 10 1 Y 1 A LYS 92 ? CE ? A LYS 57 CE 11 1 Y 1 A LYS 92 ? NZ ? A LYS 57 NZ 12 1 Y 1 A LYS 101 ? CE ? A LYS 66 CE 13 1 Y 1 A LYS 101 ? NZ ? A LYS 66 NZ 14 1 Y 1 A LYS 105 ? CE ? A LYS 70 CE 15 1 Y 1 A LYS 105 ? NZ ? A LYS 70 NZ 16 1 Y 1 A LYS 116 ? CE ? A LYS 81 CE 17 1 Y 1 A LYS 116 ? NZ ? A LYS 81 NZ 18 1 Y 1 A GLU 128 ? CD ? A GLU 93 CD 19 1 Y 1 A GLU 128 ? OE1 ? A GLU 93 OE1 20 1 Y 1 A GLU 128 ? OE2 ? A GLU 93 OE2 21 1 Y 1 B GLU 44 ? CD ? B GLU 9 CD 22 1 Y 1 B GLU 44 ? OE1 ? B GLU 9 OE1 23 1 Y 1 B GLU 44 ? OE2 ? B GLU 9 OE2 24 1 Y 1 B GLU 85 ? CG ? B GLU 50 CG 25 1 Y 1 B GLU 85 ? CD ? B GLU 50 CD 26 1 Y 1 B GLU 85 ? OE1 ? B GLU 50 OE1 27 1 Y 1 B GLU 85 ? OE2 ? B GLU 50 OE2 28 1 Y 1 B LYS 92 ? CE ? B LYS 57 CE 29 1 Y 1 B LYS 92 ? NZ ? B LYS 57 NZ 30 1 Y 1 B GLU 95 ? CG ? B GLU 60 CG 31 1 Y 1 B GLU 95 ? CD ? B GLU 60 CD 32 1 Y 1 B GLU 95 ? OE1 ? B GLU 60 OE1 33 1 Y 1 B GLU 95 ? OE2 ? B GLU 60 OE2 34 1 Y 1 B LYS 101 ? CD ? B LYS 66 CD 35 1 Y 1 B LYS 101 ? CE ? B LYS 66 CE 36 1 Y 1 B LYS 101 ? NZ ? B LYS 66 NZ 37 1 Y 1 B LYS 113 ? CE ? B LYS 78 CE 38 1 Y 1 B LYS 113 ? NZ ? B LYS 78 NZ 39 1 Y 1 B LYS 116 ? CE ? B LYS 81 CE 40 1 Y 1 B LYS 116 ? NZ ? B LYS 81 NZ 41 1 Y 1 B GLU 128 ? CG ? B GLU 93 CG 42 1 Y 1 B GLU 128 ? CD ? B GLU 93 CD 43 1 Y 1 B GLU 128 ? OE1 ? B GLU 93 OE1 44 1 Y 1 B GLU 128 ? OE2 ? B GLU 93 OE2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _cell.entry_id 4HYZ _cell.length_a 66.290 _cell.length_b 66.290 _cell.length_c 253.830 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HYZ _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4HYZ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.40M ammonium sulfate, 0.1M citric acid pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2012-06-28 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97871 1.0 2 0.97922 1.0 3 0.91837 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97871,0.97922,0.91837 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4HYZ _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 29.377 _reflns.number_all 16696 _reflns.number_obs 16696 _reflns.pdbx_netI_over_sigmaI 15.000 _reflns.pdbx_Rsym_value 0.103 _reflns.pdbx_redundancy 11.100 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 43.423 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.250 2.310 ? 11870 ? 0.873 0.9 0.873 ? 10.000 ? 1191 100.000 1 1 2.310 2.370 ? 13496 ? 0.729 1.1 0.729 ? 11.500 ? 1175 100.000 2 1 2.370 2.440 ? 13611 ? 0.605 1.3 0.605 ? 12.200 ? 1112 100.000 3 1 2.440 2.520 ? 13256 ? 0.536 1.4 0.536 ? 12.000 ? 1106 100.000 4 1 2.520 2.600 ? 12372 ? 0.436 1.8 0.436 ? 11.600 ? 1068 100.000 5 1 2.600 2.690 ? 11606 ? 0.363 2.1 0.363 ? 11.300 ? 1028 100.000 6 1 2.690 2.790 ? 10420 ? 0.268 2.9 0.268 ? 10.200 ? 1025 100.000 7 1 2.790 2.900 ? 10487 ? 0.198 3.8 0.198 ? 10.800 ? 968 100.000 8 1 2.900 3.030 ? 11395 ? 0.171 4.4 0.171 ? 11.900 ? 954 100.000 9 1 3.030 3.180 ? 10594 ? 0.135 5.6 0.135 ? 11.900 ? 889 100.000 10 1 3.180 3.350 ? 9971 ? 0.105 6.9 0.105 ? 11.600 ? 863 100.000 11 1 3.350 3.560 ? 9027 ? 0.085 8.2 0.085 ? 11.200 ? 804 100.000 12 1 3.560 3.800 ? 7804 ? 0.065 10.7 0.065 ? 9.900 ? 787 100.000 13 1 3.800 4.110 ? 8837 ? 0.060 11.5 0.060 ? 12.100 ? 733 100.000 14 1 4.110 4.500 ? 7702 ? 0.053 12.8 0.053 ? 11.500 ? 670 100.000 15 1 4.500 5.030 ? 6819 ? 0.051 13.2 0.051 ? 10.900 ? 624 100.000 16 1 5.030 5.810 ? 5179 ? 0.059 11.5 0.059 ? 9.200 ? 561 100.000 17 1 5.810 7.120 ? 5498 ? 0.073 9.4 0.073 ? 11.200 ? 490 100.000 18 1 7.120 10.060 ? 3737 ? 0.046 14.5 0.046 ? 9.500 ? 392 99.900 19 1 10.060 29.377 ? 2190 ? 0.040 16.0 0.040 ? 8.600 ? 256 96.300 20 1 # _refine.entry_id 4HYZ _refine.ls_d_res_high 2.2500 _refine.ls_d_res_low 29.377 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9600 _refine.ls_number_reflns_obs 16601 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4.SULFATE (SO4) FROM THE CRYSTALLIZATION, GLYCEROL(GOL), USED AS A CRYOPROTECTANT, AND CHLORIDE FROM THE PURIFICATION BUFFER HAVE BEEN MODELED INTO THE STRUCTURE. 5. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS). 5.UNEXPLAINED DIFFERENCE DENSITY NEAR TYR 118 ON THE A AND B SUBUNITS WAS NOT MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1876 _refine.ls_R_factor_R_work 0.1865 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2084 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0700 _refine.ls_number_reflns_R_free 842 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 51.5237 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.6180 _refine.aniso_B[2][2] -1.6180 _refine.aniso_B[3][3] 3.2360 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9447 _refine.correlation_coeff_Fo_to_Fc_free 0.9364 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 132.060 _refine.B_iso_min 21.130 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4HYZ _refine_analyze.Luzzati_coordinate_error_obs 0.315 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1822 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 2013 _refine_hist.d_res_high 2.2500 _refine_hist.d_res_low 29.377 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 914 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 59 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 265 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1935 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 239 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2198 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1935 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2593 1.060 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.740 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.800 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.2500 _refine_ls_shell.d_res_low 2.4000 _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.percent_reflns_obs 99.9600 _refine_ls_shell.number_reflns_R_work 2757 _refine_ls_shell.R_factor_all 0.1992 _refine_ls_shell.R_factor_R_work 0.1977 _refine_ls_shell.R_factor_R_free 0.2277 _refine_ls_shell.percent_reflns_R_free 5.2300 _refine_ls_shell.number_reflns_R_free 152 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2909 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF3887 family protein (RUMGNA_01855) from Ruminococcus gnavus ATCC 29149 at 2.25 A resolution' _struct.entry_id 4HYZ _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;PF13026 family protein, DUF3887, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4HYZ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 5 ? X N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7B2S7_RUMGN _struct_ref.pdbx_db_accession A7B2S7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EILKELPEGFDKETVRKQAMEDIEIAQSKDYESWKSRFTKDLQSSLTEESYDSYLKILEKQGEFKEFGKCTYLGQIKDNK KYGGVIIVVKYEEGNVNYSLAYDEDMNLVSFTM ; _struct_ref.pdbx_align_begin 37 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HYZ A 2 ? 114 ? A7B2S7 37 ? 149 ? 37 149 2 1 4HYZ B 2 ? 114 ? A7B2S7 37 ? 149 ? 37 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HYZ GLY A 1 ? UNP A7B2S7 ? ? 'expression tag' 0 1 2 4HYZ GLY B 1 ? UNP A7B2S7 ? ? 'expression tag' 0 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10850 ? 1 MORE -311 ? 1 'SSA (A^2)' 23540 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_556 -y,-x,-z+7/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 296.1350000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 12 ? SER A 29 ? ASP A 47 SER A 64 1 ? 18 HELX_P HELX_P2 2 ASP A 31 ? SER A 37 ? ASP A 66 SER A 72 1 ? 7 HELX_P HELX_P3 3 THR A 40 ? SER A 45 ? THR A 75 SER A 80 1 ? 6 HELX_P HELX_P4 4 THR A 48 ? LYS A 61 ? THR A 83 LYS A 96 1 ? 14 HELX_P HELX_P5 5 ASP B 12 ? SER B 29 ? ASP B 47 SER B 64 1 ? 18 HELX_P HELX_P6 6 ASP B 31 ? SER B 37 ? ASP B 66 SER B 72 1 ? 7 HELX_P HELX_P7 7 THR B 40 ? SER B 45 ? THR B 75 SER B 80 1 ? 6 HELX_P HELX_P8 8 THR B 48 ? LYS B 61 ? THR B 83 LYS B 96 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 20 C ? ? ? 1_555 A MSE 21 N ? ? A ALA 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A MSE 21 C ? ? ? 1_555 A GLU 22 N ? ? A MSE 56 A GLU 57 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A ASP 106 C ? ? ? 1_555 A MSE 107 N ? ? A ASP 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale4 covale both ? A MSE 107 C ? ? ? 1_555 A ASN 108 N ? ? A MSE 142 A ASN 143 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale5 covale both ? A THR 113 C ? ? ? 1_555 A MSE 114 N ? ? A THR 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? B ALA 20 C ? ? ? 1_555 B MSE 21 N ? ? B ALA 55 B MSE 56 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? B MSE 21 C ? ? ? 1_555 B GLU 22 N ? ? B MSE 56 B GLU 57 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale8 covale both ? B ASP 106 C ? ? ? 1_555 B MSE 107 N ? ? B ASP 141 B MSE 142 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale9 covale both ? B MSE 107 C ? ? ? 1_555 B ASN 108 N ? ? B MSE 142 B ASN 143 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale10 covale both ? B THR 113 C ? ? ? 1_555 B MSE 114 N ? ? B THR 148 B MSE 149 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 21 ? . . . . MSE A 56 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 107 ? . . . . MSE A 142 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 114 ? . . . . MSE A 149 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 21 ? . . . . MSE B 56 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE B 107 ? . . . . MSE B 142 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE B 114 ? . . . . MSE B 149 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 2 ? LEU A 4 ? GLU A 37 LEU A 39 A 2 PHE A 65 ? LYS A 78 ? PHE A 100 LYS A 113 A 3 LYS A 81 ? TYR A 92 ? LYS A 116 TYR A 127 A 4 GLY A 95 ? TYR A 103 ? GLY A 130 TYR A 138 A 5 LEU A 109 ? THR A 113 ? LEU A 144 THR A 148 B 1 GLU B 2 ? LEU B 4 ? GLU B 37 LEU B 39 B 2 PHE B 65 ? LYS B 78 ? PHE B 100 LYS B 113 B 3 LYS B 81 ? TYR B 92 ? LYS B 116 TYR B 127 B 4 GLY B 95 ? TYR B 103 ? GLY B 130 TYR B 138 B 5 LEU B 109 ? THR B 113 ? LEU B 144 THR B 148 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 4 ? N LEU A 39 O GLY A 75 ? O GLY A 110 A 2 3 N GLU A 67 ? N GLU A 102 O LYS A 91 ? O LYS A 126 A 3 4 N VAL A 90 ? N VAL A 125 O VAL A 97 ? O VAL A 132 A 4 5 N SER A 100 ? N SER A 135 O THR A 113 ? O THR A 148 B 1 2 N LEU B 4 ? N LEU B 39 O GLY B 75 ? O GLY B 110 B 2 3 N GLY B 69 ? N GLY B 104 O VAL B 89 ? O VAL B 124 B 3 4 N VAL B 90 ? N VAL B 125 O VAL B 97 ? O VAL B 132 B 4 5 N SER B 100 ? N SER B 135 O THR B 113 ? O THR B 148 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 7 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software A SO4 202 ? 6 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software A CL 203 ? 1 'BINDING SITE FOR RESIDUE CL A 203' AC4 Software A CL 204 ? 2 'BINDING SITE FOR RESIDUE CL A 204' AC5 Software A GOL 205 ? 4 'BINDING SITE FOR RESIDUE GOL A 205' AC6 Software A GOL 206 ? 4 'BINDING SITE FOR RESIDUE GOL A 206' AC7 Software A GOL 207 ? 4 'BINDING SITE FOR RESIDUE GOL A 207' AC8 Software A GOL 208 ? 4 'BINDING SITE FOR RESIDUE GOL A 208' AC9 Software B SO4 201 ? 5 'BINDING SITE FOR RESIDUE SO4 B 201' BC1 Software B SO4 202 ? 6 'BINDING SITE FOR RESIDUE SO4 B 202' BC2 Software B SO4 203 ? 5 'BINDING SITE FOR RESIDUE SO4 B 203' BC3 Software B SO4 204 ? 5 'BINDING SITE FOR RESIDUE SO4 B 204' BC4 Software B CL 205 ? 1 'BINDING SITE FOR RESIDUE CL B 205' BC5 Software B CL 206 ? 2 'BINDING SITE FOR RESIDUE CL B 206' BC6 Software B CL 207 ? 3 'BINDING SITE FOR RESIDUE CL B 207' BC7 Software B CL 208 ? 1 'BINDING SITE FOR RESIDUE CL B 208' BC8 Software B GOL 209 ? 3 'BINDING SITE FOR RESIDUE GOL B 209' BC9 Software B GOL 210 ? 3 'BINDING SITE FOR RESIDUE GOL B 210' CC1 Software B GOL 211 ? 1 'BINDING SITE FOR RESIDUE GOL B 211' CC2 Software B GOL 212 ? 7 'BINDING SITE FOR RESIDUE GOL B 212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 1 ? GLY A 0 . ? 1_555 ? 2 AC1 7 LYS A 78 ? LYS A 113 . ? 1_555 ? 3 AC1 7 ASP A 79 ? ASP A 114 . ? 1_555 ? 4 AC1 7 ASN A 96 ? ASN A 131 . ? 10_556 ? 5 AC1 7 HOH W . ? HOH A 322 . ? 1_555 ? 6 AC1 7 HOH W . ? HOH A 323 . ? 10_556 ? 7 AC1 7 HOH W . ? HOH A 363 . ? 1_555 ? 8 AC2 6 THR A 40 ? THR A 75 . ? 1_555 ? 9 AC2 6 LYS A 41 ? LYS A 76 . ? 1_555 ? 10 AC2 6 ASP A 104 ? ASP A 139 . ? 1_555 ? 11 AC2 6 ASP A 106 ? ASP A 141 . ? 1_555 ? 12 AC2 6 ASN A 108 ? ASN A 143 . ? 1_555 ? 13 AC2 6 HOH W . ? HOH A 361 . ? 1_555 ? 14 AC3 1 GLY A 10 ? GLY A 45 . ? 1_555 ? 15 AC4 2 LYS A 13 ? LYS A 48 . ? 1_555 ? 16 AC4 2 HOH W . ? HOH A 329 . ? 1_555 ? 17 AC5 4 LYS A 81 ? LYS A 116 . ? 1_555 ? 18 AC5 4 LYS A 82 ? LYS A 117 . ? 1_555 ? 19 AC5 4 GLU A 105 ? GLU A 140 . ? 1_555 ? 20 AC5 4 HOH W . ? HOH A 316 . ? 1_555 ? 21 AC6 4 GLU A 22 ? GLU A 57 . ? 1_555 ? 22 AC6 4 GLU A 25 ? GLU A 60 . ? 1_555 ? 23 AC6 4 ILE B 26 ? ILE B 61 . ? 8_546 ? 24 AC6 4 HOH X . ? HOH B 308 . ? 8_546 ? 25 AC7 4 ARG A 17 ? ARG A 52 . ? 1_555 ? 26 AC7 4 CYS A 71 ? CYS A 106 . ? 1_555 ? 27 AC7 4 TYR A 73 ? TYR A 108 . ? 1_555 ? 28 AC7 4 CL P . ? CL B 206 . ? 1_555 ? 29 AC8 4 LEU A 47 ? LEU A 82 . ? 1_555 ? 30 AC8 4 THR A 48 ? THR A 83 . ? 1_555 ? 31 AC8 4 GLU A 49 ? GLU A 84 . ? 1_555 ? 32 AC8 4 LYS B 41 ? LYS B 76 . ? 1_655 ? 33 AC9 5 LYS A 5 ? LYS A 40 . ? 10_556 ? 34 AC9 5 LYS A 13 ? LYS A 48 . ? 1_555 ? 35 AC9 5 LYS B 5 ? LYS B 40 . ? 10_556 ? 36 AC9 5 LYS B 13 ? LYS B 48 . ? 1_555 ? 37 AC9 5 HOH X . ? HOH B 311 . ? 10_556 ? 38 BC1 6 GLY B 1 ? GLY B 0 . ? 1_555 ? 39 BC1 6 LYS B 78 ? LYS B 113 . ? 1_555 ? 40 BC1 6 ASP B 79 ? ASP B 114 . ? 1_555 ? 41 BC1 6 ASN B 96 ? ASN B 131 . ? 10_556 ? 42 BC1 6 HOH X . ? HOH B 316 . ? 1_555 ? 43 BC1 6 HOH X . ? HOH B 324 . ? 1_555 ? 44 BC2 5 LYS A 13 ? LYS A 48 . ? 1_555 ? 45 BC2 5 ARG B 17 ? ARG B 52 . ? 1_555 ? 46 BC2 5 CYS B 71 ? CYS B 106 . ? 1_555 ? 47 BC2 5 TYR B 73 ? TYR B 108 . ? 1_555 ? 48 BC2 5 HOH X . ? HOH B 322 . ? 1_555 ? 49 BC3 5 THR B 40 ? THR B 75 . ? 1_555 ? 50 BC3 5 LYS B 41 ? LYS B 76 . ? 1_555 ? 51 BC3 5 ASP B 104 ? ASP B 139 . ? 1_555 ? 52 BC3 5 ASP B 106 ? ASP B 141 . ? 1_555 ? 53 BC3 5 ASN B 108 ? ASN B 143 . ? 1_555 ? 54 BC4 1 GLY B 10 ? GLY B 45 . ? 1_555 ? 55 BC5 2 GOL I . ? GOL A 207 . ? 1_555 ? 56 BC5 2 LYS B 13 ? LYS B 48 . ? 1_555 ? 57 BC6 3 GLU B 49 ? GLU B 84 . ? 1_555 ? 58 BC6 3 GLU B 50 ? GLU B 85 . ? 1_555 ? 59 BC6 3 HOH X . ? HOH B 314 . ? 1_555 ? 60 BC7 1 ASN B 98 ? ASN B 133 . ? 1_555 ? 61 BC8 3 GLN B 76 ? GLN B 111 . ? 1_555 ? 62 BC8 3 GLY B 85 ? GLY B 120 . ? 1_555 ? 63 BC8 3 HOH X . ? HOH B 329 . ? 1_555 ? 64 BC9 3 LYS B 82 ? LYS B 117 . ? 1_555 ? 65 BC9 3 GLU B 105 ? GLU B 140 . ? 1_555 ? 66 BC9 3 HOH X . ? HOH B 317 . ? 1_555 ? 67 CC1 1 GLN B 62 ? GLN B 97 . ? 1_555 ? 68 CC2 7 LYS A 18 ? LYS A 53 . ? 8_446 ? 69 CC2 7 GLU A 22 ? GLU A 57 . ? 8_446 ? 70 CC2 7 GLN B 19 ? GLN B 54 . ? 1_555 ? 71 CC2 7 ARG B 38 ? ARG B 73 . ? 1_555 ? 72 CC2 7 ASP B 106 ? ASP B 141 . ? 1_555 ? 73 CC2 7 ASN B 108 ? ASN B 143 . ? 1_555 ? 74 CC2 7 HOH X . ? HOH B 330 . ? 1_555 ? # _pdbx_entry_details.entry_id 4HYZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 37-149) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 40 ? ? -98.31 32.17 2 1 LYS B 40 ? ? -97.50 34.14 # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE 56 ? MET SELENOMETHIONINE 2 A MSE 107 A MSE 142 ? MET SELENOMETHIONINE 3 A MSE 114 A MSE 149 ? MET SELENOMETHIONINE 4 B MSE 21 B MSE 56 ? MET SELENOMETHIONINE 5 B MSE 107 B MSE 142 ? MET SELENOMETHIONINE 6 B MSE 114 B MSE 149 ? MET SELENOMETHIONINE # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 54.1434 -30.5441 136.9410 0.0107 -0.0947 -0.1027 0.0088 0.0560 0.0145 2.9009 3.5409 3.8883 -1.2283 -1.5242 2.2114 -0.1701 0.0488 0.1213 -0.0365 -0.1488 -0.2847 0.3365 0.5794 0.2149 'X-RAY DIFFRACTION' 2 ? refined 21.6714 -19.1341 138.9340 -0.0363 -0.1575 0.0272 0.0244 -0.1281 -0.1188 2.8011 2.7052 4.7257 -0.2438 1.6201 0.9042 -0.1918 -0.2601 0.4520 -0.1888 0.3194 0.3419 -0.1948 -0.6217 -0.3797 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 149 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 0 B 149 ? . . . . ? # _phasing.method MAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HOH O O N N 152 HOH H1 H N N 153 HOH H2 H N N 154 ILE N N N N 155 ILE CA C N S 156 ILE C C N N 157 ILE O O N N 158 ILE CB C N S 159 ILE CG1 C N N 160 ILE CG2 C N N 161 ILE CD1 C N N 162 ILE OXT O N N 163 ILE H H N N 164 ILE H2 H N N 165 ILE HA H N N 166 ILE HB H N N 167 ILE HG12 H N N 168 ILE HG13 H N N 169 ILE HG21 H N N 170 ILE HG22 H N N 171 ILE HG23 H N N 172 ILE HD11 H N N 173 ILE HD12 H N N 174 ILE HD13 H N N 175 ILE HXT H N N 176 LEU N N N N 177 LEU CA C N S 178 LEU C C N N 179 LEU O O N N 180 LEU CB C N N 181 LEU CG C N N 182 LEU CD1 C N N 183 LEU CD2 C N N 184 LEU OXT O N N 185 LEU H H N N 186 LEU H2 H N N 187 LEU HA H N N 188 LEU HB2 H N N 189 LEU HB3 H N N 190 LEU HG H N N 191 LEU HD11 H N N 192 LEU HD12 H N N 193 LEU HD13 H N N 194 LEU HD21 H N N 195 LEU HD22 H N N 196 LEU HD23 H N N 197 LEU HXT H N N 198 LYS N N N N 199 LYS CA C N S 200 LYS C C N N 201 LYS O O N N 202 LYS CB C N N 203 LYS CG C N N 204 LYS CD C N N 205 LYS CE C N N 206 LYS NZ N N N 207 LYS OXT O N N 208 LYS H H N N 209 LYS H2 H N N 210 LYS HA H N N 211 LYS HB2 H N N 212 LYS HB3 H N N 213 LYS HG2 H N N 214 LYS HG3 H N N 215 LYS HD2 H N N 216 LYS HD3 H N N 217 LYS HE2 H N N 218 LYS HE3 H N N 219 LYS HZ1 H N N 220 LYS HZ2 H N N 221 LYS HZ3 H N N 222 LYS HXT H N N 223 MSE N N N N 224 MSE CA C N S 225 MSE C C N N 226 MSE O O N N 227 MSE OXT O N N 228 MSE CB C N N 229 MSE CG C N N 230 MSE SE SE N N 231 MSE CE C N N 232 MSE H H N N 233 MSE H2 H N N 234 MSE HA H N N 235 MSE HXT H N N 236 MSE HB2 H N N 237 MSE HB3 H N N 238 MSE HG2 H N N 239 MSE HG3 H N N 240 MSE HE1 H N N 241 MSE HE2 H N N 242 MSE HE3 H N N 243 PHE N N N N 244 PHE CA C N S 245 PHE C C N N 246 PHE O O N N 247 PHE CB C N N 248 PHE CG C Y N 249 PHE CD1 C Y N 250 PHE CD2 C Y N 251 PHE CE1 C Y N 252 PHE CE2 C Y N 253 PHE CZ C Y N 254 PHE OXT O N N 255 PHE H H N N 256 PHE H2 H N N 257 PHE HA H N N 258 PHE HB2 H N N 259 PHE HB3 H N N 260 PHE HD1 H N N 261 PHE HD2 H N N 262 PHE HE1 H N N 263 PHE HE2 H N N 264 PHE HZ H N N 265 PHE HXT H N N 266 PRO N N N N 267 PRO CA C N S 268 PRO C C N N 269 PRO O O N N 270 PRO CB C N N 271 PRO CG C N N 272 PRO CD C N N 273 PRO OXT O N N 274 PRO H H N N 275 PRO HA H N N 276 PRO HB2 H N N 277 PRO HB3 H N N 278 PRO HG2 H N N 279 PRO HG3 H N N 280 PRO HD2 H N N 281 PRO HD3 H N N 282 PRO HXT H N N 283 SER N N N N 284 SER CA C N S 285 SER C C N N 286 SER O O N N 287 SER CB C N N 288 SER OG O N N 289 SER OXT O N N 290 SER H H N N 291 SER H2 H N N 292 SER HA H N N 293 SER HB2 H N N 294 SER HB3 H N N 295 SER HG H N N 296 SER HXT H N N 297 SO4 S S N N 298 SO4 O1 O N N 299 SO4 O2 O N N 300 SO4 O3 O N N 301 SO4 O4 O N N 302 THR N N N N 303 THR CA C N S 304 THR C C N N 305 THR O O N N 306 THR CB C N R 307 THR OG1 O N N 308 THR CG2 C N N 309 THR OXT O N N 310 THR H H N N 311 THR H2 H N N 312 THR HA H N N 313 THR HB H N N 314 THR HG1 H N N 315 THR HG21 H N N 316 THR HG22 H N N 317 THR HG23 H N N 318 THR HXT H N N 319 TRP N N N N 320 TRP CA C N S 321 TRP C C N N 322 TRP O O N N 323 TRP CB C N N 324 TRP CG C Y N 325 TRP CD1 C Y N 326 TRP CD2 C Y N 327 TRP NE1 N Y N 328 TRP CE2 C Y N 329 TRP CE3 C Y N 330 TRP CZ2 C Y N 331 TRP CZ3 C Y N 332 TRP CH2 C Y N 333 TRP OXT O N N 334 TRP H H N N 335 TRP H2 H N N 336 TRP HA H N N 337 TRP HB2 H N N 338 TRP HB3 H N N 339 TRP HD1 H N N 340 TRP HE1 H N N 341 TRP HE3 H N N 342 TRP HZ2 H N N 343 TRP HZ3 H N N 344 TRP HH2 H N N 345 TRP HXT H N N 346 TYR N N N N 347 TYR CA C N S 348 TYR C C N N 349 TYR O O N N 350 TYR CB C N N 351 TYR CG C Y N 352 TYR CD1 C Y N 353 TYR CD2 C Y N 354 TYR CE1 C Y N 355 TYR CE2 C Y N 356 TYR CZ C Y N 357 TYR OH O N N 358 TYR OXT O N N 359 TYR H H N N 360 TYR H2 H N N 361 TYR HA H N N 362 TYR HB2 H N N 363 TYR HB3 H N N 364 TYR HD1 H N N 365 TYR HD2 H N N 366 TYR HE1 H N N 367 TYR HE2 H N N 368 TYR HH H N N 369 TYR HXT H N N 370 VAL N N N N 371 VAL CA C N S 372 VAL C C N N 373 VAL O O N N 374 VAL CB C N N 375 VAL CG1 C N N 376 VAL CG2 C N N 377 VAL OXT O N N 378 VAL H H N N 379 VAL H2 H N N 380 VAL HA H N N 381 VAL HB H N N 382 VAL HG11 H N N 383 VAL HG12 H N N 384 VAL HG13 H N N 385 VAL HG21 H N N 386 VAL HG22 H N N 387 VAL HG23 H N N 388 VAL HXT H N N 389 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HOH O H1 sing N N 142 HOH O H2 sing N N 143 ILE N CA sing N N 144 ILE N H sing N N 145 ILE N H2 sing N N 146 ILE CA C sing N N 147 ILE CA CB sing N N 148 ILE CA HA sing N N 149 ILE C O doub N N 150 ILE C OXT sing N N 151 ILE CB CG1 sing N N 152 ILE CB CG2 sing N N 153 ILE CB HB sing N N 154 ILE CG1 CD1 sing N N 155 ILE CG1 HG12 sing N N 156 ILE CG1 HG13 sing N N 157 ILE CG2 HG21 sing N N 158 ILE CG2 HG22 sing N N 159 ILE CG2 HG23 sing N N 160 ILE CD1 HD11 sing N N 161 ILE CD1 HD12 sing N N 162 ILE CD1 HD13 sing N N 163 ILE OXT HXT sing N N 164 LEU N CA sing N N 165 LEU N H sing N N 166 LEU N H2 sing N N 167 LEU CA C sing N N 168 LEU CA CB sing N N 169 LEU CA HA sing N N 170 LEU C O doub N N 171 LEU C OXT sing N N 172 LEU CB CG sing N N 173 LEU CB HB2 sing N N 174 LEU CB HB3 sing N N 175 LEU CG CD1 sing N N 176 LEU CG CD2 sing N N 177 LEU CG HG sing N N 178 LEU CD1 HD11 sing N N 179 LEU CD1 HD12 sing N N 180 LEU CD1 HD13 sing N N 181 LEU CD2 HD21 sing N N 182 LEU CD2 HD22 sing N N 183 LEU CD2 HD23 sing N N 184 LEU OXT HXT sing N N 185 LYS N CA sing N N 186 LYS N H sing N N 187 LYS N H2 sing N N 188 LYS CA C sing N N 189 LYS CA CB sing N N 190 LYS CA HA sing N N 191 LYS C O doub N N 192 LYS C OXT sing N N 193 LYS CB CG sing N N 194 LYS CB HB2 sing N N 195 LYS CB HB3 sing N N 196 LYS CG CD sing N N 197 LYS CG HG2 sing N N 198 LYS CG HG3 sing N N 199 LYS CD CE sing N N 200 LYS CD HD2 sing N N 201 LYS CD HD3 sing N N 202 LYS CE NZ sing N N 203 LYS CE HE2 sing N N 204 LYS CE HE3 sing N N 205 LYS NZ HZ1 sing N N 206 LYS NZ HZ2 sing N N 207 LYS NZ HZ3 sing N N 208 LYS OXT HXT sing N N 209 MSE N CA sing N N 210 MSE N H sing N N 211 MSE N H2 sing N N 212 MSE CA C sing N N 213 MSE CA CB sing N N 214 MSE CA HA sing N N 215 MSE C O doub N N 216 MSE C OXT sing N N 217 MSE OXT HXT sing N N 218 MSE CB CG sing N N 219 MSE CB HB2 sing N N 220 MSE CB HB3 sing N N 221 MSE CG SE sing N N 222 MSE CG HG2 sing N N 223 MSE CG HG3 sing N N 224 MSE SE CE sing N N 225 MSE CE HE1 sing N N 226 MSE CE HE2 sing N N 227 MSE CE HE3 sing N N 228 PHE N CA sing N N 229 PHE N H sing N N 230 PHE N H2 sing N N 231 PHE CA C sing N N 232 PHE CA CB sing N N 233 PHE CA HA sing N N 234 PHE C O doub N N 235 PHE C OXT sing N N 236 PHE CB CG sing N N 237 PHE CB HB2 sing N N 238 PHE CB HB3 sing N N 239 PHE CG CD1 doub Y N 240 PHE CG CD2 sing Y N 241 PHE CD1 CE1 sing Y N 242 PHE CD1 HD1 sing N N 243 PHE CD2 CE2 doub Y N 244 PHE CD2 HD2 sing N N 245 PHE CE1 CZ doub Y N 246 PHE CE1 HE1 sing N N 247 PHE CE2 CZ sing Y N 248 PHE CE2 HE2 sing N N 249 PHE CZ HZ sing N N 250 PHE OXT HXT sing N N 251 PRO N CA sing N N 252 PRO N CD sing N N 253 PRO N H sing N N 254 PRO CA C sing N N 255 PRO CA CB sing N N 256 PRO CA HA sing N N 257 PRO C O doub N N 258 PRO C OXT sing N N 259 PRO CB CG sing N N 260 PRO CB HB2 sing N N 261 PRO CB HB3 sing N N 262 PRO CG CD sing N N 263 PRO CG HG2 sing N N 264 PRO CG HG3 sing N N 265 PRO CD HD2 sing N N 266 PRO CD HD3 sing N N 267 PRO OXT HXT sing N N 268 SER N CA sing N N 269 SER N H sing N N 270 SER N H2 sing N N 271 SER CA C sing N N 272 SER CA CB sing N N 273 SER CA HA sing N N 274 SER C O doub N N 275 SER C OXT sing N N 276 SER CB OG sing N N 277 SER CB HB2 sing N N 278 SER CB HB3 sing N N 279 SER OG HG sing N N 280 SER OXT HXT sing N N 281 SO4 S O1 doub N N 282 SO4 S O2 doub N N 283 SO4 S O3 sing N N 284 SO4 S O4 sing N N 285 THR N CA sing N N 286 THR N H sing N N 287 THR N H2 sing N N 288 THR CA C sing N N 289 THR CA CB sing N N 290 THR CA HA sing N N 291 THR C O doub N N 292 THR C OXT sing N N 293 THR CB OG1 sing N N 294 THR CB CG2 sing N N 295 THR CB HB sing N N 296 THR OG1 HG1 sing N N 297 THR CG2 HG21 sing N N 298 THR CG2 HG22 sing N N 299 THR CG2 HG23 sing N N 300 THR OXT HXT sing N N 301 TRP N CA sing N N 302 TRP N H sing N N 303 TRP N H2 sing N N 304 TRP CA C sing N N 305 TRP CA CB sing N N 306 TRP CA HA sing N N 307 TRP C O doub N N 308 TRP C OXT sing N N 309 TRP CB CG sing N N 310 TRP CB HB2 sing N N 311 TRP CB HB3 sing N N 312 TRP CG CD1 doub Y N 313 TRP CG CD2 sing Y N 314 TRP CD1 NE1 sing Y N 315 TRP CD1 HD1 sing N N 316 TRP CD2 CE2 doub Y N 317 TRP CD2 CE3 sing Y N 318 TRP NE1 CE2 sing Y N 319 TRP NE1 HE1 sing N N 320 TRP CE2 CZ2 sing Y N 321 TRP CE3 CZ3 doub Y N 322 TRP CE3 HE3 sing N N 323 TRP CZ2 CH2 doub Y N 324 TRP CZ2 HZ2 sing N N 325 TRP CZ3 CH2 sing Y N 326 TRP CZ3 HZ3 sing N N 327 TRP CH2 HH2 sing N N 328 TRP OXT HXT sing N N 329 TYR N CA sing N N 330 TYR N H sing N N 331 TYR N H2 sing N N 332 TYR CA C sing N N 333 TYR CA CB sing N N 334 TYR CA HA sing N N 335 TYR C O doub N N 336 TYR C OXT sing N N 337 TYR CB CG sing N N 338 TYR CB HB2 sing N N 339 TYR CB HB3 sing N N 340 TYR CG CD1 doub Y N 341 TYR CG CD2 sing Y N 342 TYR CD1 CE1 sing Y N 343 TYR CD1 HD1 sing N N 344 TYR CD2 CE2 doub Y N 345 TYR CD2 HD2 sing N N 346 TYR CE1 CZ doub Y N 347 TYR CE1 HE1 sing N N 348 TYR CE2 CZ sing Y N 349 TYR CE2 HE2 sing N N 350 TYR CZ OH sing N N 351 TYR OH HH sing N N 352 TYR OXT HXT sing N N 353 VAL N CA sing N N 354 VAL N H sing N N 355 VAL N H2 sing N N 356 VAL CA C sing N N 357 VAL CA CB sing N N 358 VAL CA HA sing N N 359 VAL C O doub N N 360 VAL C OXT sing N N 361 VAL CB CG1 sing N N 362 VAL CB CG2 sing N N 363 VAL CB HB sing N N 364 VAL CG1 HG11 sing N N 365 VAL CG1 HG12 sing N N 366 VAL CG1 HG13 sing N N 367 VAL CG2 HG21 sing N N 368 VAL CG2 HG22 sing N N 369 VAL CG2 HG23 sing N N 370 VAL OXT HXT sing N N 371 # _atom_sites.entry_id 4HYZ _atom_sites.fract_transf_matrix[1][1] 0.015085 _atom_sites.fract_transf_matrix[1][2] 0.008709 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017419 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003940 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ # loop_ #