HEADER TRANSFERASE 15-NOV-12 4HZD TITLE CRYSTAL STRUCTURE OF SERINE ACETYLTRANSFERASE IN COMPLEX WITH COENZYME TITLE 2 A FROM BRUCELLA ABORTUS STRAIN S19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSE, SERINE ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 430066; SOURCE 4 STRAIN: S19; SOURCE 5 GENE: BABS19_I11940, CYSE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS LEFT HANDED BETA-HELICAL (LBH) DOMAIN, CYSTEINE BIOSYNTHESIS, SERINE KEYWDS 2 ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,G.SAMUDRALA REVDAT 3 13-AUG-14 4HZD 1 JRNL REVDAT 2 06-AUG-14 4HZD 1 JRNL REVDAT 1 19-FEB-14 4HZD 0 JRNL AUTH S.KUMAR,N.KUMAR,N.ALAM,S.GOURINATH JRNL TITL CRYSTAL STRUCTURE OF SERINE ACETYL TRANSFERASE FROM BRUCELLA JRNL TITL 2 ABORTUS AND ITS COMPLEX WITH COENZYME A. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1844 1741 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 25058332 JRNL DOI 10.1016/J.BBAPAP.2014.07.009 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3930 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5349 ; 1.598 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;35.388 ;23.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 613 ;14.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2975 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4HZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB076109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5417 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : AUTOMAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.06790 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 1000, 5% PEG 3350, 5% MPD, 0.1 REMARK 280 M ETHYLENE GLYCOL, TRIS 100 MM, 20-40 MM MGCL2, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.17350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.12238 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.22500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.17350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.12238 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.22500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.17350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.12238 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.22500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.24477 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 70.45000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.24477 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 70.45000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.24477 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 473 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 451 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 467 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 VAL A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 261 REMARK 465 PRO A 262 REMARK 465 SER A 263 REMARK 465 ARG A 264 REMARK 465 VAL A 265 REMARK 465 MET A 266 REMARK 465 ASP A 267 REMARK 465 GLN A 268 REMARK 465 MET A 269 REMARK 465 LEU A 270 REMARK 465 GLY A 271 REMARK 465 ASP A 272 REMARK 465 GLY A 273 REMARK 465 ILE A 274 REMARK 465 LEU A 275 REMARK 465 GLU A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 LYS B 8 REMARK 465 VAL B 9 REMARK 465 ASN B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 ASP B 14 REMARK 465 GLN B 15 REMARK 465 GLU B 261 REMARK 465 PRO B 262 REMARK 465 SER B 263 REMARK 465 ARG B 264 REMARK 465 VAL B 265 REMARK 465 MET B 266 REMARK 465 ASP B 267 REMARK 465 GLN B 268 REMARK 465 MET B 269 REMARK 465 LEU B 270 REMARK 465 GLY B 271 REMARK 465 ASP B 272 REMARK 465 GLY B 273 REMARK 465 ILE B 274 REMARK 465 LEU B 275 REMARK 465 GLU B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 THR A 260 OG1 CG2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 THR B 260 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 132 O HOH A 403 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 128 CG HIS A 128 CD2 0.057 REMARK 500 HIS A 168 CG HIS A 168 CD2 0.056 REMARK 500 HIS B 21 CG HIS B 21 CD2 0.055 REMARK 500 HIS B 168 CG HIS B 168 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 187 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 62.70 -154.56 REMARK 500 HIS A 168 -47.05 75.66 REMARK 500 ALA A 169 -28.61 67.99 REMARK 500 ARG A 202 8.77 -150.72 REMARK 500 ASP B 17 78.21 -150.35 REMARK 500 HIS B 168 -43.34 70.51 REMARK 500 ALA B 169 -31.63 69.93 REMARK 500 SER B 199 -76.65 -101.31 REMARK 500 ARG B 202 11.14 -141.76 REMARK 500 CYS B 259 -155.95 -100.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 44 21.1 L L OUTSIDE RANGE REMARK 500 THR B 44 21.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P B 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD2 REMARK 620 2 HOH B 401 O 156.4 REMARK 620 3 HOH B 443 O 87.3 87.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 232 O REMARK 620 2 SER A 234 OG 91.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HZC RELATED DB: PDB REMARK 900 RELATED ID: 3MC4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WW/RSP5/WWP DOMAIN: BACTERIAL REMARK 900 TRANSFERASE HEXAPEPTIDE REPEAT: SERINE O-ACETYLTRANSFERASE REMARK 900 FROM BRUCELLA MELITENSIS REMARK 900 RELATED ID: 3P1B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NATIVE SERINE ACETYLTRANSFERASE 1 REMARK 900 FROM ENTAMOEBA HISTOLYTICA REMARK 900 RELATED ID: 1SSQ RELATED DB: PDB REMARK 900 SERINE ACETYLTRANSFERASE- COMPLEX WITH CYSTEINE REMARK 900 RELATED ID: 1T3D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SERINE ACETYLTRANSFERASE FROM E.COLI REMARK 900 AT 2.2A DBREF 4HZD A 1 274 UNP B2S6A2 B2S6A2_BRUA1 1 274 DBREF 4HZD B 1 274 UNP B2S6A2 B2S6A2_BRUA1 1 274 SEQADV 4HZD LEU A 275 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD GLU A 276 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS A 277 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS A 278 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS A 279 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS A 280 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS A 281 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS A 282 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD LEU B 275 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD GLU B 276 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS B 277 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS B 278 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS B 279 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS B 280 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS B 281 UNP B2S6A2 EXPRESSION TAG SEQADV 4HZD HIS B 282 UNP B2S6A2 EXPRESSION TAG SEQRES 1 A 282 MET SER VAL ARG MET SER SER LYS VAL ASN ALA GLY LEU SEQRES 2 A 282 ASP GLN VAL ASP PRO ILE TRP HIS SER ILE ARG ALA GLU SEQRES 3 A 282 ALA GLU GLU ALA THR ARG ASN ASP PRO VAL LEU GLY ALA SEQRES 4 A 282 PHE LEU TYR ALA THR ILE LEU ASN GLN PRO SER LEU GLU SEQRES 5 A 282 GLU ALA VAL MET HIS ARG ILE ALA GLU ARG LEU GLY HIS SEQRES 6 A 282 PRO ASP VAL SER ALA ASP ILE LEU ARG GLN THR PHE ASP SEQRES 7 A 282 THR MET LEU GLU ALA ASN PRO GLU TRP SER HIS VAL LEU SEQRES 8 A 282 ARG VAL ASP ILE GLN ALA VAL TYR ASP ARG ASP PRO ALA SEQRES 9 A 282 TYR SER ARG PHE MET ASP PRO VAL LEU TYR LEU LYS GLY SEQRES 10 A 282 PHE HIS ALA ILE GLN THR HIS ARG LEU ALA HIS TRP LEU SEQRES 11 A 282 TYR LYS GLN GLY ARG LYS ASP PHE ALA TYR TYR LEU GLN SEQRES 12 A 282 SER ARG SER SER SER ILE PHE GLN THR ASP ILE HIS PRO SEQRES 13 A 282 ALA ALA ARG LEU GLY SER GLY LEU PHE LEU ASP HIS ALA SEQRES 14 A 282 THR GLY LEU VAL VAL GLY GLU THR ALA VAL VAL GLU ASP SEQRES 15 A 282 ASN VAL SER ILE LEU HIS GLY VAL THR LEU GLY GLY THR SEQRES 16 A 282 GLY LYS SER SER GLY ASP ARG HIS PRO LYS ILE ARG GLN SEQRES 17 A 282 GLY VAL LEU ILE GLY ALA GLY ALA LYS ILE LEU GLY ASN SEQRES 18 A 282 ILE GLN VAL GLY GLN CYS SER LYS ILE ALA ALA GLY SER SEQRES 19 A 282 VAL VAL LEU LYS SER VAL PRO HIS ASN VAL THR VAL ALA SEQRES 20 A 282 GLY VAL PRO ALA ARG ILE ILE GLY GLU THR GLY CYS THR SEQRES 21 A 282 GLU PRO SER ARG VAL MET ASP GLN MET LEU GLY ASP GLY SEQRES 22 A 282 ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 282 MET SER VAL ARG MET SER SER LYS VAL ASN ALA GLY LEU SEQRES 2 B 282 ASP GLN VAL ASP PRO ILE TRP HIS SER ILE ARG ALA GLU SEQRES 3 B 282 ALA GLU GLU ALA THR ARG ASN ASP PRO VAL LEU GLY ALA SEQRES 4 B 282 PHE LEU TYR ALA THR ILE LEU ASN GLN PRO SER LEU GLU SEQRES 5 B 282 GLU ALA VAL MET HIS ARG ILE ALA GLU ARG LEU GLY HIS SEQRES 6 B 282 PRO ASP VAL SER ALA ASP ILE LEU ARG GLN THR PHE ASP SEQRES 7 B 282 THR MET LEU GLU ALA ASN PRO GLU TRP SER HIS VAL LEU SEQRES 8 B 282 ARG VAL ASP ILE GLN ALA VAL TYR ASP ARG ASP PRO ALA SEQRES 9 B 282 TYR SER ARG PHE MET ASP PRO VAL LEU TYR LEU LYS GLY SEQRES 10 B 282 PHE HIS ALA ILE GLN THR HIS ARG LEU ALA HIS TRP LEU SEQRES 11 B 282 TYR LYS GLN GLY ARG LYS ASP PHE ALA TYR TYR LEU GLN SEQRES 12 B 282 SER ARG SER SER SER ILE PHE GLN THR ASP ILE HIS PRO SEQRES 13 B 282 ALA ALA ARG LEU GLY SER GLY LEU PHE LEU ASP HIS ALA SEQRES 14 B 282 THR GLY LEU VAL VAL GLY GLU THR ALA VAL VAL GLU ASP SEQRES 15 B 282 ASN VAL SER ILE LEU HIS GLY VAL THR LEU GLY GLY THR SEQRES 16 B 282 GLY LYS SER SER GLY ASP ARG HIS PRO LYS ILE ARG GLN SEQRES 17 B 282 GLY VAL LEU ILE GLY ALA GLY ALA LYS ILE LEU GLY ASN SEQRES 18 B 282 ILE GLN VAL GLY GLN CYS SER LYS ILE ALA ALA GLY SER SEQRES 19 B 282 VAL VAL LEU LYS SER VAL PRO HIS ASN VAL THR VAL ALA SEQRES 20 B 282 GLY VAL PRO ALA ARG ILE ILE GLY GLU THR GLY CYS THR SEQRES 21 B 282 GLU PRO SER ARG VAL MET ASP GLN MET LEU GLY ASP GLY SEQRES 22 B 282 ILE LEU GLU HIS HIS HIS HIS HIS HIS HET COA A 301 48 HET MG A 302 1 HET MG A 303 1 HET 15P B 301 7 HETNAM COA COENZYME A HETNAM MG MAGNESIUM ION HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN 15P PEG 1500 FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 MG 2(MG 2+) FORMUL 6 15P C69 H140 O35 FORMUL 7 HOH *149(H2 O) HELIX 1 1 GLY A 12 VAL A 16 5 5 HELIX 2 2 ASP A 17 ASP A 34 1 18 HELIX 3 3 LEU A 37 ILE A 45 1 9 HELIX 4 4 SER A 50 GLY A 64 1 15 HELIX 5 5 SER A 69 ASN A 84 1 16 HELIX 6 6 GLU A 86 ASP A 102 1 17 HELIX 7 7 PHE A 108 TYR A 114 1 7 HELIX 8 8 LEU A 115 GLN A 133 1 19 HELIX 9 9 ARG A 135 PHE A 150 1 16 HELIX 10 10 ASP B 17 ASP B 34 1 18 HELIX 11 11 LEU B 37 ILE B 45 1 9 HELIX 12 12 SER B 50 GLY B 64 1 15 HELIX 13 13 SER B 69 ASN B 84 1 16 HELIX 14 14 GLU B 86 ASP B 102 1 17 HELIX 15 15 PHE B 108 LEU B 115 1 8 HELIX 16 16 LEU B 115 GLY B 134 1 20 HELIX 17 17 ARG B 135 PHE B 150 1 16 SHEET 1 A 5 ASP A 153 ILE A 154 0 SHEET 2 A 5 VAL A 173 VAL A 174 1 O VAL A 174 N ASP A 153 SHEET 3 A 5 THR A 191 GLY A 193 1 O LEU A 192 N VAL A 173 SHEET 4 A 5 LYS A 217 LEU A 219 1 O ILE A 218 N THR A 191 SHEET 5 A 5 VAL A 235 VAL A 236 1 O VAL A 236 N LYS A 217 SHEET 1 B 4 ARG A 159 LEU A 160 0 SHEET 2 B 4 VAL A 179 VAL A 180 1 O VAL A 180 N ARG A 159 SHEET 3 B 4 LYS A 205 ILE A 206 1 O ILE A 206 N VAL A 179 SHEET 4 B 4 GLN A 223 VAL A 224 1 O VAL A 224 N LYS A 205 SHEET 1 C 6 PHE A 165 LEU A 166 0 SHEET 2 C 6 SER A 185 ILE A 186 1 O ILE A 186 N PHE A 165 SHEET 3 C 6 LEU A 211 ILE A 212 1 O ILE A 212 N SER A 185 SHEET 4 C 6 LYS A 229 ILE A 230 1 O ILE A 230 N LEU A 211 SHEET 5 C 6 VAL A 244 ALA A 247 1 O VAL A 246 N LYS A 229 SHEET 6 C 6 ARG A 252 GLU A 256 -1 O ILE A 254 N THR A 245 SHEET 1 D 5 THR B 152 ILE B 154 0 SHEET 2 D 5 LEU B 172 VAL B 174 1 O LEU B 172 N ASP B 153 SHEET 3 D 5 THR B 191 GLY B 193 1 O LEU B 192 N VAL B 173 SHEET 4 D 5 LYS B 217 LEU B 219 1 O ILE B 218 N THR B 191 SHEET 5 D 5 VAL B 235 VAL B 236 1 O VAL B 236 N LYS B 217 SHEET 1 E 4 ARG B 159 LEU B 160 0 SHEET 2 E 4 VAL B 179 VAL B 180 1 O VAL B 180 N ARG B 159 SHEET 3 E 4 LYS B 205 ILE B 206 1 O ILE B 206 N VAL B 179 SHEET 4 E 4 GLN B 223 VAL B 224 1 O VAL B 224 N LYS B 205 SHEET 1 F 6 PHE B 165 LEU B 166 0 SHEET 2 F 6 SER B 185 ILE B 186 1 O ILE B 186 N PHE B 165 SHEET 3 F 6 LEU B 211 ILE B 212 1 O ILE B 212 N SER B 185 SHEET 4 F 6 LYS B 229 ILE B 230 1 O ILE B 230 N LEU B 211 SHEET 5 F 6 VAL B 244 ALA B 247 1 O VAL B 246 N LYS B 229 SHEET 6 F 6 ARG B 252 GLU B 256 -1 O ILE B 254 N THR B 245 SSBOND 1 CYS A 227 CYS A 259 1555 1555 2.02 SSBOND 2 CYS B 227 CYS B 259 1555 1555 2.04 LINK OD2 ASP A 71 MG MG A 303 1555 1555 2.38 LINK O ALA A 232 MG MG A 302 1555 1555 2.90 LINK OG SER A 234 MG MG A 302 1555 1555 2.97 LINK MG MG A 303 O HOH B 401 1555 1555 2.09 LINK MG MG A 303 O HOH B 443 1555 1555 2.60 CISPEP 1 VAL A 249 PRO A 250 0 2.63 CISPEP 2 VAL B 249 PRO B 250 0 3.63 SITE 1 AC1 16 HIS A 168 THR A 191 GLY A 194 LYS A 197 SITE 2 AC1 16 GLY A 213 ALA A 214 ALA A 231 ALA A 232 SITE 3 AC1 16 VAL A 235 LEU A 237 THR A 245 ALA A 247 SITE 4 AC1 16 ILE A 254 MG A 302 PRO B 250 ARG B 252 SITE 1 AC2 6 ALA A 232 GLY A 233 SER A 234 ALA A 247 SITE 2 AC2 6 GLY A 248 COA A 301 SITE 1 AC3 3 ASP A 71 HOH B 401 HOH B 443 SITE 1 AC4 6 THR B 170 GLY B 171 GLY B 189 GLY B 215 SITE 2 AC4 6 LYS B 217 HOH B 470 CRYST1 104.347 104.347 105.675 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009583 0.005533 0.000000 0.00000 SCALE2 0.000000 0.011066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009463 0.00000