HEADER HYDROLASE 16-NOV-12 4I05 TITLE STRUCTURE OF INTERMEDIATE PROCESSING FORM OF CATHEPSIN B1 FROM TITLE 2 SCHISTOSOMA MANSONI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN B-LIKE PEPTIDASE (C01 FAMILY); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 56-340; COMPND 5 SYNONYM: CATHEPSIN B1 ISOTYPE 1; COMPND 6 EC: 3.4.22.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: CB1.1, SMP_103610; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS PEPTIDASE, DIGESTIVE TRACT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,A.JILKOVA,J.BRYNDA,M.HORN,M.MARES REVDAT 4 06-DEC-23 4I05 1 REMARK REVDAT 3 08-NOV-23 4I05 1 REMARK SEQADV SSBOND LINK REVDAT 2 25-MAY-16 4I05 1 JRNL REVDAT 1 05-FEB-14 4I05 0 JRNL AUTH A.JILKOVA,M.HORN,P.REZACOVA,L.MARESOVA,P.FAJTOVA,J.BRYNDA, JRNL AUTH 2 J.VONDRASEK,J.H.MCKERROW,C.R.CAFFREY,M.MARES JRNL TITL ACTIVATION ROUTE OF THE SCHISTOSOMA MANSONI CATHEPSIN B1 JRNL TITL 2 DRUG TARGET: STRUCTURAL MAP WITH A GLYCOSAMINOGLYCAN SWITCH JRNL REF STRUCTURE V. 22 1786 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25456815 JRNL DOI 10.1016/J.STR.2014.09.015 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1573 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2355 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3203 ; 1.487 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 5.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.147 ;23.363 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;13.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1834 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1126 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1595 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 288 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2302 ; 0.897 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1003 ; 1.661 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 900 ; 2.668 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3160 10.3820 -29.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.0557 T22: 0.1344 REMARK 3 T33: 0.1082 T12: -0.0070 REMARK 3 T13: -0.0264 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.1959 L22: 3.3234 REMARK 3 L33: 3.8917 L12: -0.6581 REMARK 3 L13: -1.0059 L23: 0.8580 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: 0.0720 S13: 0.0930 REMARK 3 S21: 0.1332 S22: 0.0768 S23: -0.1345 REMARK 3 S31: 0.0744 S32: 0.1678 S33: 0.0204 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9470 14.4450 -7.0820 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.1079 REMARK 3 T33: 0.0792 T12: 0.0269 REMARK 3 T13: -0.0010 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.7018 L22: 5.7692 REMARK 3 L33: 3.3245 L12: 1.0812 REMARK 3 L13: -0.8217 L23: -1.4014 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.1624 S13: 0.3144 REMARK 3 S21: 0.3614 S22: 0.0435 S23: 0.3579 REMARK 3 S31: -0.3181 S32: -0.3381 S33: -0.0946 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1320 -2.0940 -14.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.0158 T22: 0.0722 REMARK 3 T33: 0.0449 T12: -0.0219 REMARK 3 T13: 0.0014 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.3787 L22: 3.9297 REMARK 3 L33: 1.5713 L12: -1.0068 REMARK 3 L13: 0.6496 L23: -0.6435 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.1002 S13: -0.0059 REMARK 3 S21: 0.0523 S22: 0.0645 S23: 0.0661 REMARK 3 S31: 0.1006 S32: -0.0945 S33: -0.0531 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3390 1.2730 -12.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.9040 REMARK 3 T33: 1.0026 T12: -0.1289 REMARK 3 T13: 0.0842 T23: 0.3421 REMARK 3 L TENSOR REMARK 3 L11: 0.5025 L22: 73.2772 REMARK 3 L33: 0.5854 L12: -5.3848 REMARK 3 L13: -0.3581 L23: 6.0654 REMARK 3 S TENSOR REMARK 3 S11: -0.2370 S12: 0.2865 S13: 0.0326 REMARK 3 S21: 2.5261 S22: -0.0665 S23: 2.4505 REMARK 3 S31: 0.1568 S32: 0.2636 S33: 0.3035 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8920 -6.6350 -23.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0869 REMARK 3 T33: 0.0443 T12: -0.0135 REMARK 3 T13: -0.0171 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.4635 L22: 2.7119 REMARK 3 L33: 1.7554 L12: 0.4586 REMARK 3 L13: -0.4929 L23: -0.4977 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.1310 S13: -0.0708 REMARK 3 S21: -0.1857 S22: 0.0223 S23: -0.1022 REMARK 3 S31: 0.1508 S32: 0.0386 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2350 -16.1420 -15.0840 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.0529 REMARK 3 T33: 0.1314 T12: -0.0108 REMARK 3 T13: -0.0002 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 6.4129 L22: 1.4504 REMARK 3 L33: 4.5123 L12: -0.0450 REMARK 3 L13: 2.8060 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.1035 S13: -0.3148 REMARK 3 S21: 0.1729 S22: 0.0204 S23: -0.1620 REMARK 3 S31: 0.3470 S32: 0.2346 S33: -0.1048 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1670 -12.0800 -21.9150 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.1841 REMARK 3 T33: 0.1244 T12: -0.0500 REMARK 3 T13: -0.0096 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.4421 L22: 3.2189 REMARK 3 L33: 6.6117 L12: 1.0691 REMARK 3 L13: -0.9231 L23: 0.2154 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.0698 S13: 0.0144 REMARK 3 S21: -0.0653 S22: -0.0357 S23: 0.3039 REMARK 3 S31: 0.2443 S32: -0.0735 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3780 13.1010 -21.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0468 REMARK 3 T33: 0.0514 T12: 0.0102 REMARK 3 T13: 0.0110 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.4050 L22: 2.1166 REMARK 3 L33: 3.1011 L12: 0.3614 REMARK 3 L13: 0.3358 L23: -0.1512 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.1872 S13: 0.2340 REMARK 3 S21: -0.0077 S22: 0.0342 S23: -0.0046 REMARK 3 S31: -0.2349 S32: 0.0651 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6720 3.0240 -13.5040 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.0545 REMARK 3 T33: 0.0856 T12: -0.0043 REMARK 3 T13: 0.0308 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 4.5091 L22: 0.5616 REMARK 3 L33: 2.6085 L12: -0.5134 REMARK 3 L13: 0.9401 L23: 0.2363 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: 0.0620 S13: 0.0777 REMARK 3 S21: 0.0589 S22: -0.0184 S23: -0.1245 REMARK 3 S31: 0.1232 S32: 0.2669 S33: 0.0682 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 261 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3090 3.5460 -10.0900 REMARK 3 T TENSOR REMARK 3 T11: 0.0225 T22: 0.0715 REMARK 3 T33: 0.0452 T12: 0.0049 REMARK 3 T13: 0.0075 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.1225 L22: 1.7838 REMARK 3 L33: 1.3123 L12: -0.1526 REMARK 3 L13: 0.5038 L23: -0.0963 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: 0.0979 S13: 0.0015 REMARK 3 S21: 0.0956 S22: -0.0666 S23: -0.0714 REMARK 3 S31: 0.1294 S32: 0.1267 S33: 0.0162 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7660 9.2640 -20.8410 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0437 REMARK 3 T33: 0.0950 T12: -0.0016 REMARK 3 T13: 0.0339 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 18.2647 L22: 0.4630 REMARK 3 L33: 3.5231 L12: 0.7474 REMARK 3 L13: 2.2668 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.3300 S12: 0.4026 S13: 0.2707 REMARK 3 S21: 0.0690 S22: 0.0925 S23: 0.1177 REMARK 3 S31: -0.1524 S32: 0.2534 S33: 0.2375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4I05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI111 DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.03130 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.2M AMMONIUM ACETATE, 0.1M REMARK 280 SODIUM CITRATE, 30% PEG 4000. PROTEIN BUFFER AND CONCENTRATION: REMARK 280 5MM SODIUM ACETATE, PH 5.5, CPR=1.5MG/ML. RATIO PROTEIN: REMARK 280 RESERVOIR=1:0.75. CRYOCOOLED IN MOTHER LIQUOR., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.92950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.49400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.92950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.49400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 ALA A 42 REMARK 465 ARG A 43 REMARK 465 ILE A 44 REMARK 465 GLN A 45 REMARK 465 MET A 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 273 O HOH A 836 2.17 REMARK 500 O HOH A 682 O HOH A 803 2.17 REMARK 500 O HOH A 550 O HOH A 744 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 -153.04 68.25 REMARK 500 GLN A 201 42.82 -109.38 REMARK 500 ASN A 226 88.05 -67.65 REMARK 500 LYS A 282 -6.58 74.22 REMARK 500 ASN A 293 172.73 64.09 REMARK 500 ALA A 319 -158.16 -155.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 508 O REMARK 620 2 HOH A 516 O 140.7 REMARK 620 3 HOH A 517 O 115.5 102.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QSD RELATED DB: PDB REMARK 900 MATURE SMCB1 IN COMPLEX WITH INHIBITOR CA074 REMARK 900 RELATED ID: 3S3R RELATED DB: PDB REMARK 900 MATURE SMCB1 IN COMPLEX WITH INHIBITOR K11777 REMARK 900 RELATED ID: 3S3Q RELATED DB: PDB REMARK 900 MATURE SMCB1 IN COMPLEX WITH INHIBITOR K11017 REMARK 900 RELATED ID: 4I04 RELATED DB: PDB REMARK 900 SMCB1 ZYMOGEN REMARK 900 RELATED ID: 4I07 RELATED DB: PDB DBREF 4I05 A 39 323 UNP Q8MNY2 Q8MNY2_SCHMA 56 340 SEQADV 4I05 ALA A 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 4I05 ALA A 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQRES 1 A 285 LEU ASP ASP ALA ARG ILE GLN MET GLY ALA ARG ARG GLU SEQRES 2 A 285 GLU PRO ASP LEU ARG ARG THR ARG ARG PRO THR VAL ASP SEQRES 3 A 285 HIS ASN ASP TRP ASN VAL GLU ILE PRO SER SER PHE ASP SEQRES 4 A 285 SER ARG LYS LYS TRP PRO ARG CYS LYS SER ILE ALA THR SEQRES 5 A 285 ILE ARG ASP GLN SER ARG CYS GLY SER CSO TRP ALA PHE SEQRES 6 A 285 GLY ALA VAL GLU ALA MET SER ASP ARG SER CYS ILE GLN SEQRES 7 A 285 SER GLY GLY LYS GLN ASN VAL GLU LEU SER ALA VAL ASP SEQRES 8 A 285 LEU LEU SER CYS CYS GLU SER CYS GLY LEU GLY CYS GLU SEQRES 9 A 285 GLY GLY ILE LEU GLY PRO ALA TRP ASP TYR TRP VAL LYS SEQRES 10 A 285 GLU GLY ILE VAL THR GLY SER SER LYS GLU ASN HIS ALA SEQRES 11 A 285 GLY CYS GLU PRO TYR PRO PHE PRO LYS CYS GLU HIS HIS SEQRES 12 A 285 THR LYS GLY LYS TYR PRO PRO CYS GLY SER LYS ILE TYR SEQRES 13 A 285 LYS THR PRO ARG CYS LYS GLN THR CYS GLN LYS LYS TYR SEQRES 14 A 285 LYS THR PRO TYR THR GLN ASP LYS HIS ARG GLY LYS SER SEQRES 15 A 285 SER TYR ASN VAL LYS ASN ASP GLU LYS ALA ILE GLN LYS SEQRES 16 A 285 GLU ILE MET LYS TYR GLY PRO VAL GLU ALA GLY PHE THR SEQRES 17 A 285 VAL TYR GLU ASP PHE LEU ASN TYR LYS SER GLY ILE TYR SEQRES 18 A 285 LYS HIS ILE THR GLY GLU THR LEU GLY GLY HIS ALA ILE SEQRES 19 A 285 ARG ILE ILE GLY TRP GLY VAL GLU ASN LYS ALA PRO TYR SEQRES 20 A 285 TRP LEU ILE ALA ASN SER TRP ASN GLU ASP TRP GLY GLU SEQRES 21 A 285 ASN GLY TYR PHE ARG ILE VAL ARG GLY ARG ASP GLU CYS SEQRES 22 A 285 SER ILE GLU SER GLU VAL THR ALA GLY ARG ILE ASN MODRES 4I05 CSO A 100 CYS S-HYDROXYCYSTEINE HET CSO A 100 7 HET NA A 401 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NA SODIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 NA NA 1+ FORMUL 3 HOH *340(H2 O) HELIX 1 1 GLU A 52 ARG A 60 1 9 HELIX 2 2 SER A 78 TRP A 82 1 5 HELIX 3 3 CYS A 85 THR A 90 5 6 HELIX 4 4 SER A 99 GLN A 116 1 18 HELIX 5 5 SER A 126 CYS A 134 1 9 HELIX 6 6 LEU A 139 GLY A 143 5 5 HELIX 7 7 ILE A 145 GLU A 156 1 12 HELIX 8 8 PRO A 210 LYS A 215 1 6 HELIX 9 9 ASP A 227 GLY A 239 1 13 HELIX 10 10 ASP A 250 TYR A 254 5 5 HELIX 11 11 ASP A 309 ILE A 313 5 5 SHEET 1 A 3 THR A 62 VAL A 63 0 SHEET 2 A 3 SER A 220 VAL A 224 1 O ASN A 223 N VAL A 63 SHEET 3 A 3 THR A 318 ARG A 321 -1 O ALA A 319 N TYR A 222 SHEET 1 B 3 PHE A 76 ASP A 77 0 SHEET 2 B 3 THR A 266 GLU A 280 -1 O TRP A 277 N PHE A 76 SHEET 3 B 3 VAL A 241 TYR A 248 -1 N VAL A 247 O LEU A 267 SHEET 1 C 5 PHE A 76 ASP A 77 0 SHEET 2 C 5 THR A 266 GLU A 280 -1 O TRP A 277 N PHE A 76 SHEET 3 C 5 ALA A 283 ALA A 289 -1 O ALA A 289 N ARG A 273 SHEET 4 C 5 TYR A 301 VAL A 305 -1 O PHE A 302 N ILE A 288 SHEET 5 C 5 ILE A 258 TYR A 259 1 N TYR A 259 O ARG A 303 SSBOND 1 CYS A 85 CYS A 114 1555 1555 2.08 SSBOND 2 CYS A 97 CYS A 141 1555 1555 2.05 SSBOND 3 CYS A 133 CYS A 199 1555 1555 2.02 SSBOND 4 CYS A 134 CYS A 137 1555 1555 2.04 SSBOND 5 CYS A 170 CYS A 203 1555 1555 2.03 SSBOND 6 CYS A 178 CYS A 189 1555 1555 2.02 LINK C SER A 99 N CSO A 100 1555 1555 1.34 LINK C CSO A 100 N TRP A 101 1555 1555 1.34 LINK NA NA A 401 O HOH A 508 1555 1555 3.06 LINK NA NA A 401 O HOH A 516 1555 1555 3.08 LINK NA NA A 401 O HOH A 517 1555 1555 3.07 SITE 1 AC1 5 ARG A 92 SER A 163 HOH A 508 HOH A 516 SITE 2 AC1 5 HOH A 517 CRYST1 93.859 50.988 62.546 90.00 91.31 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010654 0.000000 0.000244 0.00000 SCALE2 0.000000 0.019612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015992 0.00000