HEADER TOXIN 16-NOV-12 4I0N TITLE PORE FORMING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NECROTIC ENTERITIS TOXIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-322; COMPND 5 SYNONYM: NETB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: NETB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PDEST KEYWDS ALPHA-HEMOLYSIN FOLD, PORE FORMING PROTEIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR X.YAN,C.J.PORTER,S.P.HARDY,D.STEER,A.I.SMITH,N.QUINSET,V.HUGHES, AUTHOR 2 J.K.CHEUNG,A.L.KEYBURN,M.KALDHUSDAL,R.J.MOORE,T.L.BANNAM, AUTHOR 3 J.C.WHISSTOCK,J.I.ROOD REVDAT 4 20-MAR-24 4I0N 1 REMARK LINK REVDAT 3 15-NOV-17 4I0N 1 REMARK REVDAT 2 10-APR-13 4I0N 1 JRNL REVDAT 1 20-MAR-13 4I0N 0 JRNL AUTH X.X.YAN,C.J.PORTER,S.P.HARDY,D.STEER,A.I.SMITH,N.S.QUINSEY, JRNL AUTH 2 V.HUGHES,J.K.CHEUNG,A.L.KEYBURN,M.KALDHUSDAL,R.J.MOORE, JRNL AUTH 3 T.L.BANNAM,J.C.WHISSTOCK,J.I.ROOD JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE PORE-FORMING TOXIN JRNL TITL 2 NETB FROM CLOSTRIDIUM PERFRINGENS JRNL REF MBIO V. 4 00019 2013 JRNL REFN ESSN 2150-7511 JRNL PMID 23386432 JRNL DOI 10.1128/MBIO.00019-13 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2180 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2961 ; 1.323 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;33.311 ;25.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;11.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.134 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1667 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 0.646 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2153 ; 1.257 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 852 ; 2.238 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 802 ; 3.603 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 72.111 20.919 25.089 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.1053 REMARK 3 T33: 0.0613 T12: 0.0089 REMARK 3 T13: 0.0024 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 12.0031 L22: 0.7280 REMARK 3 L33: 1.6100 L12: 1.0072 REMARK 3 L13: -2.9715 L23: -0.2797 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.8565 S13: 0.2801 REMARK 3 S21: -0.0117 S22: 0.1380 S23: -0.0463 REMARK 3 S31: 0.0206 S32: -0.1922 S33: -0.1183 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0479 27.8534 14.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.0182 REMARK 3 T33: 0.0409 T12: -0.0150 REMARK 3 T13: 0.0050 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.9655 L22: 0.1989 REMARK 3 L33: 0.8634 L12: -0.0552 REMARK 3 L13: 0.3405 L23: -0.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.0044 S13: 0.0155 REMARK 3 S21: -0.0583 S22: 0.0187 S23: -0.0170 REMARK 3 S31: 0.0060 S32: -0.0560 S33: 0.0328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4I0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 26.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 0.8M LISO4, REMARK 280 5%(V/V) GLYCEROL , PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.72200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.84900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.72200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.84900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ILE A 36 REMARK 465 ASN A 37 REMARK 465 LYS A 38 REMARK 465 ILE A 39 REMARK 465 GLU A 40 REMARK 465 LEU A 41 REMARK 465 LYS A 42 REMARK 465 ASN A 43 REMARK 465 LEU A 44 REMARK 465 GLU A 162 REMARK 465 GLY A 163 REMARK 465 LYS A 164 REMARK 465 THR A 165 REMARK 465 ALA A 166 REMARK 465 GLY A 167 REMARK 465 ALA A 168 REMARK 465 GLY A 169 REMARK 465 ILE A 170 REMARK 465 ASN A 171 REMARK 465 ALA A 172 REMARK 465 SER A 173 REMARK 465 TYR A 174 REMARK 465 ASN A 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CD CE NZ REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 LYS A 68 NZ REMARK 470 LYS A 132 CE NZ REMARK 470 GLN A 177 CD OE1 NE2 REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 LYS A 237 CE NZ REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 297 CD CE NZ REMARK 470 MET A 308 SD CE REMARK 470 LYS A 317 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 140 -135.33 52.41 REMARK 500 GLN A 184 51.00 -141.52 REMARK 500 ASP A 194 72.86 -152.07 REMARK 500 VAL A 206 -69.17 -106.36 REMARK 500 LEU A 225 -65.24 -24.98 REMARK 500 ASN A 233 143.50 84.89 REMARK 500 GLU A 288 71.73 -119.06 REMARK 500 THR A 289 -56.56 63.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 HOH A 559 O 85.0 REMARK 620 3 HOH A 603 O 87.0 89.3 REMARK 620 4 HOH A 699 O 89.0 100.8 168.8 REMARK 620 5 HOH A 704 O 84.3 165.0 79.7 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 560 O REMARK 620 2 HOH A 630 O 85.8 REMARK 620 3 HOH A 673 O 86.7 117.4 REMARK 620 4 HOH A 753 O 160.6 113.1 88.0 REMARK 620 5 HOH A 754 O 81.0 160.1 76.8 79.6 REMARK 620 6 HOH A 755 O 85.3 78.5 161.7 94.2 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 682 O REMARK 620 2 HOH A 697 O 107.9 REMARK 620 3 HOH A 751 O 75.6 170.2 REMARK 620 4 HOH A 752 O 129.1 97.8 86.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 535 O REMARK 620 2 HOH A 597 O 95.4 REMARK 620 3 HOH A 611 O 87.3 81.4 REMARK 620 4 HOH A 745 O 85.8 173.3 92.1 REMARK 620 5 HOH A 746 O 94.4 98.9 178.2 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 583 O REMARK 620 2 HOH A 649 O 93.3 REMARK 620 3 HOH A 706 O 94.8 90.5 REMARK 620 4 HOH A 748 O 178.8 87.8 85.5 REMARK 620 5 HOH A 749 O 91.0 171.2 96.8 87.8 REMARK 620 6 HOH A 757 O 86.7 92.3 176.8 92.9 80.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 DBREF 4I0N A 34 322 UNP A8ULG6 A8ULG6_CLOPF 34 322 SEQRES 1 A 289 ASN ASP ILE ASN LYS ILE GLU LEU LYS ASN LEU SER GLY SEQRES 2 A 289 GLU ILE ILE LYS GLU ASN GLY LYS GLU ALA ILE LYS TYR SEQRES 3 A 289 THR SER SER ASP THR ALA SER HIS LYS GLY TRP LYS ALA SEQRES 4 A 289 THR LEU SER GLY THR PHE ILE GLU ASP PRO HIS SER ASP SEQRES 5 A 289 LYS LYS THR ALA LEU LEU ASN LEU GLU GLY PHE ILE PRO SEQRES 6 A 289 SER ASP LYS GLN ILE PHE GLY SER LYS TYR TYR GLY LYS SEQRES 7 A 289 MET LYS TRP PRO GLU THR TYR ARG ILE ASN VAL LYS SER SEQRES 8 A 289 ALA ASP VAL ASN ASN ASN ILE LYS ILE ALA ASN SER ILE SEQRES 9 A 289 PRO LYS ASN THR ILE ASP LYS LYS ASP VAL SER ASN SER SEQRES 10 A 289 ILE GLY TYR SER ILE GLY GLY ASN ILE SER VAL GLU GLY SEQRES 11 A 289 LYS THR ALA GLY ALA GLY ILE ASN ALA SER TYR ASN VAL SEQRES 12 A 289 GLN ASN THR ILE SER TYR GLU GLN PRO ASP PHE ARG THR SEQRES 13 A 289 ILE GLN ARG LYS ASP ASP ALA ASN LEU ALA SER TRP ASP SEQRES 14 A 289 ILE LYS PHE VAL GLU THR LYS ASP GLY TYR ASN ILE ASP SEQRES 15 A 289 SER TYR HIS ALA ILE TYR GLY ASN GLN LEU PHE MET LYS SEQRES 16 A 289 SER ARG LEU TYR ASN ASN GLY ASP LYS ASN PHE THR ASP SEQRES 17 A 289 ASP ARG ASP LEU SER THR LEU ILE SER GLY GLY PHE SER SEQRES 18 A 289 PRO ASN MET ALA LEU ALA LEU THR ALA PRO LYS ASN ALA SEQRES 19 A 289 LYS GLU SER VAL ILE ILE VAL GLU TYR GLN ARG PHE ASP SEQRES 20 A 289 ASN ASP TYR ILE LEU ASN TRP GLU THR THR GLN TRP ARG SEQRES 21 A 289 GLY THR ASN LYS LEU SER SER THR SER GLU TYR ASN GLU SEQRES 22 A 289 PHE MET PHE LYS ILE ASN TRP GLN ASP HIS LYS ILE GLU SEQRES 23 A 289 TYR TYR LEU HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HET EDO A 406 4 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 5(MG 2+) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *258(H2 O) HELIX 1 1 ASN A 234 ASN A 238 5 5 HELIX 2 2 ASP A 241 LEU A 245 5 5 HELIX 3 3 SER A 246 GLY A 251 1 6 SHEET 1 A 6 GLU A 47 GLU A 51 0 SHEET 2 A 6 LYS A 54 HIS A 67 -1 O LYS A 58 N GLU A 47 SHEET 3 A 6 TRP A 70 GLU A 80 -1 O GLY A 76 N SER A 61 SHEET 4 A 6 LYS A 86 PRO A 98 -1 O GLU A 94 N THR A 73 SHEET 5 A 6 ASN A 256 PRO A 264 -1 O LEU A 259 N LEU A 91 SHEET 6 A 6 LYS A 132 ILE A 137 -1 N ALA A 134 O ALA A 260 SHEET 1 B 5 GLU A 47 GLU A 51 0 SHEET 2 B 5 LYS A 54 HIS A 67 -1 O LYS A 58 N GLU A 47 SHEET 3 B 5 TRP A 70 GLU A 80 -1 O GLY A 76 N SER A 61 SHEET 4 B 5 LYS A 86 PRO A 98 -1 O GLU A 94 N THR A 73 SHEET 5 B 5 GLY A 252 PHE A 253 -1 O PHE A 253 N ILE A 97 SHEET 1 C 5 GLN A 102 GLY A 105 0 SHEET 2 C 5 TYR A 109 ALA A 125 -1 O LYS A 111 N PHE A 104 SHEET 3 C 5 LEU A 198 PHE A 205 -1 O ILE A 203 N TYR A 118 SHEET 4 C 5 PHE A 187 ASP A 195 -1 N ILE A 190 O ASP A 202 SHEET 5 C 5 THR A 141 ILE A 142 -1 N ILE A 142 O THR A 189 SHEET 1 D 5 GLN A 102 GLY A 105 0 SHEET 2 D 5 TYR A 109 ALA A 125 -1 O LYS A 111 N PHE A 104 SHEET 3 D 5 GLU A 269 GLU A 288 -1 O TYR A 283 N MET A 112 SHEET 4 D 5 GLN A 291 ASN A 312 -1 O THR A 295 N ILE A 284 SHEET 5 D 5 LYS A 317 TYR A 320 -1 O GLU A 319 N LYS A 310 SHEET 1 E 3 ILE A 159 VAL A 161 0 SHEET 2 E 3 ASP A 146 TYR A 153 -1 N GLY A 152 O SER A 160 SHEET 3 E 3 GLN A 177 GLU A 183 -1 O TYR A 182 N VAL A 147 LINK OD1 ASP A 63 MG MG A 404 1555 1555 2.21 LINK MG MG A 401 O HOH A 560 1555 1555 2.14 LINK MG MG A 401 O HOH A 630 1555 1555 2.12 LINK MG MG A 401 O HOH A 673 1555 1555 2.18 LINK MG MG A 401 O HOH A 753 1555 1555 1.98 LINK MG MG A 401 O HOH A 754 1555 1555 2.14 LINK MG MG A 401 O HOH A 755 1555 1555 2.27 LINK MG MG A 402 O HOH A 682 1555 1555 2.24 LINK MG MG A 402 O HOH A 697 1555 1555 2.03 LINK MG MG A 402 O HOH A 751 1555 1555 2.00 LINK MG MG A 402 O HOH A 752 1555 1555 2.14 LINK MG MG A 403 O HOH A 535 1555 1555 2.11 LINK MG MG A 403 O HOH A 597 1555 1555 1.97 LINK MG MG A 403 O HOH A 611 1555 1555 2.09 LINK MG MG A 403 O HOH A 745 1555 1555 2.20 LINK MG MG A 403 O HOH A 746 1555 1555 2.02 LINK MG MG A 404 O HOH A 559 1555 1555 2.05 LINK MG MG A 404 O HOH A 603 1555 1555 2.41 LINK MG MG A 404 O HOH A 699 1555 1555 2.12 LINK MG MG A 404 O HOH A 704 1555 1555 2.15 LINK MG MG A 405 O HOH A 583 1555 1555 2.17 LINK MG MG A 405 O HOH A 649 1555 1555 2.11 LINK MG MG A 405 O HOH A 706 1555 1555 2.11 LINK MG MG A 405 O HOH A 748 1555 1555 2.14 LINK MG MG A 405 O HOH A 749 1555 1555 2.17 LINK MG MG A 405 O HOH A 757 1555 1555 2.09 CISPEP 1 ILE A 137 PRO A 138 0 0.96 SITE 1 AC1 6 HOH A 560 HOH A 630 HOH A 673 HOH A 753 SITE 2 AC1 6 HOH A 754 HOH A 755 SITE 1 AC2 4 HOH A 682 HOH A 697 HOH A 751 HOH A 752 SITE 1 AC3 5 HOH A 535 HOH A 597 HOH A 611 HOH A 745 SITE 2 AC3 5 HOH A 746 SITE 1 AC4 6 ASP A 63 HOH A 559 HOH A 603 HOH A 621 SITE 2 AC4 6 HOH A 699 HOH A 704 SITE 1 AC5 6 HOH A 583 HOH A 649 HOH A 706 HOH A 748 SITE 2 AC5 6 HOH A 749 HOH A 757 SITE 1 AC6 2 LYS A 107 LEU A 231 CRYST1 167.444 29.698 56.265 90.00 99.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005972 0.000000 0.000955 0.00000 SCALE2 0.000000 0.033673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017999 0.00000