HEADER HYDROLASE 20-NOV-12 4I1A TITLE CRYSTAL STRUCTURE OF THE APO FORM OF RAPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR ASPARTATE PHOSPHATASE I; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU05010, RAPI, YDDL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TETRATRICOPEPTIDE REPEAT, PHOSPHATASE, SPO0F, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.PARASHAR,P.D.JEFFREY,M.B.NEIDITCH REVDAT 4 28-FEB-24 4I1A 1 REMARK REVDAT 3 15-NOV-17 4I1A 1 REMARK REVDAT 2 10-APR-13 4I1A 1 JRNL REVDAT 1 03-APR-13 4I1A 0 JRNL AUTH V.PARASHAR,P.D.JEFFREY,M.B.NEIDITCH JRNL TITL CONFORMATIONAL CHANGE-INDUCED REPEAT DOMAIN EXPANSION JRNL TITL 2 REGULATES RAP PHOSPHATASE QUORUM-SENSING SIGNAL RECEPTORS. JRNL REF PLOS BIOL. V. 11 01512 2013 JRNL REFN ISSN 1544-9173 JRNL PMID 23526881 JRNL DOI 10.1371/JOURNAL.PBIO.1001512 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2742 - 5.7405 0.90 2553 137 0.2682 0.3032 REMARK 3 2 5.7405 - 4.5581 1.00 2698 127 0.2179 0.2886 REMARK 3 3 4.5581 - 3.9824 1.00 2672 138 0.1889 0.2239 REMARK 3 4 3.9824 - 3.6185 1.00 2637 132 0.1982 0.2599 REMARK 3 5 3.6185 - 3.3593 1.00 2625 155 0.2059 0.2572 REMARK 3 6 3.3593 - 3.1613 1.00 2615 136 0.2102 0.2755 REMARK 3 7 3.1613 - 3.0030 1.00 2607 152 0.2161 0.2639 REMARK 3 8 3.0030 - 2.8723 1.00 2641 139 0.2254 0.2644 REMARK 3 9 2.8723 - 2.7618 1.00 2595 142 0.2351 0.3085 REMARK 3 10 2.7618 - 2.6665 1.00 2562 146 0.2233 0.2857 REMARK 3 11 2.6665 - 2.5831 1.00 2647 133 0.2316 0.2280 REMARK 3 12 2.5831 - 2.5093 1.00 2589 122 0.2407 0.2869 REMARK 3 13 2.5093 - 2.4432 0.99 2562 127 0.2683 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 62.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61770 REMARK 3 B22 (A**2) : -7.02980 REMARK 3 B33 (A**2) : 7.64760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5447 REMARK 3 ANGLE : 0.888 7299 REMARK 3 CHIRALITY : 0.067 767 REMARK 3 PLANARITY : 0.003 920 REMARK 3 DIHEDRAL : 16.682 2050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 101:138) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2156 20.6476 41.1801 REMARK 3 T TENSOR REMARK 3 T11: 0.6202 T22: 0.8145 REMARK 3 T33: 0.6697 T12: -0.0723 REMARK 3 T13: 0.1472 T23: -0.2388 REMARK 3 L TENSOR REMARK 3 L11: 2.3250 L22: 2.3955 REMARK 3 L33: 7.8664 L12: -1.4483 REMARK 3 L13: 1.1638 L23: -2.7202 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -1.0093 S13: 0.0439 REMARK 3 S21: 1.0958 S22: 0.3185 S23: 0.2891 REMARK 3 S31: -0.8801 S32: 1.2635 S33: -0.2833 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 139:175) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1313 23.0550 29.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.7010 T22: 0.5006 REMARK 3 T33: 0.7163 T12: -0.3343 REMARK 3 T13: 0.2545 T23: -0.2760 REMARK 3 L TENSOR REMARK 3 L11: 7.8034 L22: 3.5824 REMARK 3 L33: 6.1093 L12: 1.3810 REMARK 3 L13: -1.1124 L23: -4.6576 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.2148 S13: 1.0811 REMARK 3 S21: -0.0230 S22: 0.6384 S23: -0.7361 REMARK 3 S31: -1.3804 S32: 0.5212 S33: -0.3520 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 176:219) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7867 18.0761 17.8608 REMARK 3 T TENSOR REMARK 3 T11: 0.7735 T22: 0.6991 REMARK 3 T33: 0.5223 T12: -0.3518 REMARK 3 T13: 0.3736 T23: -0.2270 REMARK 3 L TENSOR REMARK 3 L11: 5.0508 L22: 1.3836 REMARK 3 L33: 2.7578 L12: -0.4308 REMARK 3 L13: -1.0157 L23: -0.1906 REMARK 3 S TENSOR REMARK 3 S11: -0.2092 S12: 0.3009 S13: 0.1946 REMARK 3 S21: -1.1323 S22: 0.5781 S23: -0.8141 REMARK 3 S31: -1.0204 S32: 0.9877 S33: -0.3016 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 220:295) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1735 1.6608 14.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.4133 T22: 0.4833 REMARK 3 T33: 0.3909 T12: 0.0109 REMARK 3 T13: 0.0448 T23: -0.1927 REMARK 3 L TENSOR REMARK 3 L11: 4.6094 L22: 7.8590 REMARK 3 L33: 3.7649 L12: 0.7894 REMARK 3 L13: -0.8365 L23: 1.8327 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: 0.1828 S13: -0.1957 REMARK 3 S21: -0.6414 S22: 0.4025 S23: -0.3971 REMARK 3 S31: -0.3552 S32: 0.6621 S33: -0.3231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 296:333) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5560 -4.1637 27.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.3927 T22: 0.3361 REMARK 3 T33: 0.5425 T12: 0.0636 REMARK 3 T13: -0.0278 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 5.7643 L22: 7.6095 REMARK 3 L33: 8.6452 L12: -2.4772 REMARK 3 L13: -2.9714 L23: 1.9018 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: -0.1797 S13: -1.0724 REMARK 3 S21: 0.7266 S22: 0.1755 S23: 0.4004 REMARK 3 S31: 1.0861 S32: 0.0511 S33: -0.2446 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 334:374) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7585 7.3756 29.0273 REMARK 3 T TENSOR REMARK 3 T11: 0.3224 T22: 0.4055 REMARK 3 T33: 0.4614 T12: 0.0381 REMARK 3 T13: 0.0601 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 4.9034 L22: 6.6822 REMARK 3 L33: 9.6177 L12: 4.2461 REMARK 3 L13: 6.5978 L23: 4.5480 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: 0.0704 S13: -0.1455 REMARK 3 S21: -0.0145 S22: -0.0521 S23: 0.2533 REMARK 3 S31: 0.0436 S32: -0.1680 S33: 0.1188 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 14:176) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4851 45.7761 47.1909 REMARK 3 T TENSOR REMARK 3 T11: 0.3431 T22: 0.2677 REMARK 3 T33: 0.2469 T12: -0.0544 REMARK 3 T13: -0.0927 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.7318 L22: 8.0505 REMARK 3 L33: 4.3826 L12: 1.9179 REMARK 3 L13: -0.6432 L23: -0.2600 REMARK 3 S TENSOR REMARK 3 S11: -0.1504 S12: -0.0693 S13: 0.2386 REMARK 3 S21: 0.6002 S22: -0.1443 S23: -0.3735 REMARK 3 S31: -0.2935 S32: 0.0689 S33: 0.2271 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 177:377) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6719 26.7774 43.2666 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.5250 REMARK 3 T33: 0.6479 T12: -0.0014 REMARK 3 T13: 0.2722 T23: -0.0960 REMARK 3 L TENSOR REMARK 3 L11: 2.1977 L22: 2.2300 REMARK 3 L33: 3.3806 L12: 0.2426 REMARK 3 L13: 1.0631 L23: 1.5449 REMARK 3 S TENSOR REMARK 3 S11: 0.2029 S12: -0.6174 S13: 0.3551 REMARK 3 S21: 0.0471 S22: -0.3908 S23: 0.6637 REMARK 3 S31: -0.5091 S32: -0.7451 S33: 0.0819 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM KCL, 5 MM DTT, 5 MM MGCL2, 17% REMARK 280 [W/V] PEG 3350, 200 MM LITHIUM NITRATE, AND 120 MM TRIS-HCL (PH REMARK 280 7.8), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.44850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.60450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.44850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.60450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 PHE A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 11 REMARK 465 PRO A 12 REMARK 465 TYR A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 THR A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 19 REMARK 465 LEU A 20 REMARK 465 ASN A 21 REMARK 465 GLU A 22 REMARK 465 TRP A 23 REMARK 465 TYR A 24 REMARK 465 THR A 25 REMARK 465 SER A 26 REMARK 465 ILE A 27 REMARK 465 LYS A 28 REMARK 465 ASN A 29 REMARK 465 ASP A 30 REMARK 465 GLN A 31 REMARK 465 VAL A 32 REMARK 465 GLU A 33 REMARK 465 GLN A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 ILE A 37 REMARK 465 ILE A 38 REMARK 465 LYS A 39 REMARK 465 THR A 40 REMARK 465 GLU A 41 REMARK 465 VAL A 42 REMARK 465 GLU A 43 REMARK 465 LYS A 44 REMARK 465 GLU A 45 REMARK 465 LEU A 46 REMARK 465 LEU A 47 REMARK 465 ASN A 48 REMARK 465 MET A 49 REMARK 465 GLU A 50 REMARK 465 GLU A 51 REMARK 465 ASN A 52 REMARK 465 GLN A 53 REMARK 465 ASP A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 LEU A 57 REMARK 465 TYR A 58 REMARK 465 TYR A 59 REMARK 465 GLN A 60 REMARK 465 LEU A 61 REMARK 465 LEU A 62 REMARK 465 GLU A 63 REMARK 465 PHE A 64 REMARK 465 ARG A 65 REMARK 465 HIS A 66 REMARK 465 GLU A 67 REMARK 465 ILE A 68 REMARK 465 MET A 69 REMARK 465 LEU A 70 REMARK 465 SER A 71 REMARK 465 TYR A 72 REMARK 465 MET A 73 REMARK 465 LYS A 74 REMARK 465 SER A 75 REMARK 465 LYS A 76 REMARK 465 GLU A 77 REMARK 465 ILE A 78 REMARK 465 GLU A 79 REMARK 465 ASP A 80 REMARK 465 LEU A 81 REMARK 465 ASN A 82 REMARK 465 ASN A 83 REMARK 465 ALA A 84 REMARK 465 TYR A 85 REMARK 465 GLU A 86 REMARK 465 THR A 87 REMARK 465 ILE A 88 REMARK 465 LYS A 89 REMARK 465 GLU A 90 REMARK 465 ILE A 91 REMARK 465 GLU A 92 REMARK 465 LYS A 93 REMARK 465 GLN A 94 REMARK 465 GLY A 95 REMARK 465 GLN A 96 REMARK 465 LEU A 97 REMARK 465 THR A 98 REMARK 465 GLY A 99 REMARK 465 MET A 100 REMARK 465 GLU A 375 REMARK 465 ILE A 376 REMARK 465 ILE A 377 REMARK 465 ASP A 378 REMARK 465 GLU A 379 REMARK 465 ASN A 380 REMARK 465 GLN A 381 REMARK 465 PRO A 382 REMARK 465 ASP A 383 REMARK 465 SER A 384 REMARK 465 ILE A 385 REMARK 465 GLY A 386 REMARK 465 SER A 387 REMARK 465 SER A 388 REMARK 465 ASP A 389 REMARK 465 PHE A 390 REMARK 465 LYS A 391 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 VAL B 4 REMARK 465 PHE B 5 REMARK 465 LEU B 6 REMARK 465 ASP B 7 REMARK 465 LYS B 8 REMARK 465 ASP B 9 REMARK 465 LYS B 10 REMARK 465 ILE B 11 REMARK 465 PRO B 12 REMARK 465 TYR B 13 REMARK 465 MET B 73 REMARK 465 LYS B 74 REMARK 465 SER B 75 REMARK 465 LYS B 76 REMARK 465 GLU B 77 REMARK 465 ASP B 378 REMARK 465 GLU B 379 REMARK 465 ASN B 380 REMARK 465 GLN B 381 REMARK 465 PRO B 382 REMARK 465 ASP B 383 REMARK 465 SER B 384 REMARK 465 ILE B 385 REMARK 465 GLY B 386 REMARK 465 SER B 387 REMARK 465 SER B 388 REMARK 465 ASP B 389 REMARK 465 PHE B 390 REMARK 465 LYS B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 135 57.60 -99.92 REMARK 500 GLU A 137 -86.63 -95.23 REMARK 500 TYR A 176 94.26 -51.72 REMARK 500 SER A 314 -158.75 -122.35 REMARK 500 GLU B 51 64.92 69.94 REMARK 500 GLU B 177 5.22 -68.26 REMARK 500 LYS B 238 12.86 59.29 REMARK 500 GLU B 252 23.11 -72.25 REMARK 500 ILE B 253 -46.74 -137.67 REMARK 500 ASP B 298 92.37 58.15 REMARK 500 GLU B 300 -64.47 31.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GYO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAP PROTEIN COMPLEXED WITH COMPETENCE AND REMARK 900 SPORULATION FACTOR REMARK 900 RELATED ID: 3Q15 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAPH COMPLEXED WITH SPO0F REMARK 900 RELATED ID: 3ULQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ANTI-ACTIVATOR RAPF COMPLEXED WITH THE REMARK 900 RESPONSE REGULATOR COMA DNA BINDING DOMAIN DBREF 4I1A A 1 391 UNP P96649 RAPI_BACSU 1 391 DBREF 4I1A B 1 391 UNP P96649 RAPI_BACSU 1 391 SEQRES 1 A 391 MET ARG GLY VAL PHE LEU ASP LYS ASP LYS ILE PRO TYR SEQRES 2 A 391 ASP LEU VAL THR LYS LYS LEU ASN GLU TRP TYR THR SER SEQRES 3 A 391 ILE LYS ASN ASP GLN VAL GLU GLN ALA GLU ILE ILE LYS SEQRES 4 A 391 THR GLU VAL GLU LYS GLU LEU LEU ASN MET GLU GLU ASN SEQRES 5 A 391 GLN ASP ALA LEU LEU TYR TYR GLN LEU LEU GLU PHE ARG SEQRES 6 A 391 HIS GLU ILE MET LEU SER TYR MET LYS SER LYS GLU ILE SEQRES 7 A 391 GLU ASP LEU ASN ASN ALA TYR GLU THR ILE LYS GLU ILE SEQRES 8 A 391 GLU LYS GLN GLY GLN LEU THR GLY MET LEU GLU TYR TYR SEQRES 9 A 391 PHE TYR PHE PHE LYS GLY MET TYR GLU PHE ARG ARG LYS SEQRES 10 A 391 GLU LEU ILE SER ALA ILE SER ALA TYR ARG ILE ALA GLU SEQRES 11 A 391 SER LYS LEU SER GLU VAL GLU ASP GLU ILE GLU LYS ALA SEQRES 12 A 391 GLU PHE PHE PHE LYS VAL SER TYR VAL TYR TYR TYR MET SEQRES 13 A 391 LYS GLN THR TYR PHE SER MET ASN TYR ALA ASN ARG ALA SEQRES 14 A 391 LEU LYS ILE PHE ARG GLU TYR GLU GLU TYR ALA VAL GLN SEQRES 15 A 391 THR VAL ARG CYS GLN PHE ILE VAL ALA GLY ASN LEU ILE SEQRES 16 A 391 ASP SER LEU GLU TYR GLU ARG ALA LEU GLU GLN PHE LEU SEQRES 17 A 391 LYS SER LEU GLU ILE SER LYS GLU SER ASN ILE GLU HIS SEQRES 18 A 391 LEU ILE ALA MET SER HIS MET ASN ILE GLY ILE CYS TYR SEQRES 19 A 391 ASP GLU LEU LYS GLU TYR LYS LYS ALA SER GLN HIS LEU SEQRES 20 A 391 ILE LEU ALA LEU GLU ILE PHE GLU LYS SER LYS HIS SER SEQRES 21 A 391 PHE LEU THR LYS THR LEU PHE THR LEU THR TYR VAL GLU SEQRES 22 A 391 ALA LYS GLN GLN ASN TYR ASN VAL ALA LEU ILE TYR PHE SEQRES 23 A 391 ARG LYS GLY ARG PHE ILE ALA ASP LYS SER ASP ASP LYS SEQRES 24 A 391 GLU TYR SER ALA LYS PHE LYS ILE LEU GLU GLY LEU PHE SEQRES 25 A 391 PHE SER ASP GLY GLU THR GLN LEU ILE LYS ASN ALA PHE SEQRES 26 A 391 SER TYR LEU ALA SER ARG LYS MET PHE ALA ASP VAL GLU SEQRES 27 A 391 ASN PHE SER ILE GLU VAL ALA ASP TYR PHE HIS GLU GLN SEQRES 28 A 391 GLY ASN LEU MET LEU SER ASN GLU TYR TYR ARG MET SER SEQRES 29 A 391 ILE GLU ALA ARG ARG LYS ILE LYS LYS GLY GLU ILE ILE SEQRES 30 A 391 ASP GLU ASN GLN PRO ASP SER ILE GLY SER SER ASP PHE SEQRES 31 A 391 LYS SEQRES 1 B 391 MET ARG GLY VAL PHE LEU ASP LYS ASP LYS ILE PRO TYR SEQRES 2 B 391 ASP LEU VAL THR LYS LYS LEU ASN GLU TRP TYR THR SER SEQRES 3 B 391 ILE LYS ASN ASP GLN VAL GLU GLN ALA GLU ILE ILE LYS SEQRES 4 B 391 THR GLU VAL GLU LYS GLU LEU LEU ASN MET GLU GLU ASN SEQRES 5 B 391 GLN ASP ALA LEU LEU TYR TYR GLN LEU LEU GLU PHE ARG SEQRES 6 B 391 HIS GLU ILE MET LEU SER TYR MET LYS SER LYS GLU ILE SEQRES 7 B 391 GLU ASP LEU ASN ASN ALA TYR GLU THR ILE LYS GLU ILE SEQRES 8 B 391 GLU LYS GLN GLY GLN LEU THR GLY MET LEU GLU TYR TYR SEQRES 9 B 391 PHE TYR PHE PHE LYS GLY MET TYR GLU PHE ARG ARG LYS SEQRES 10 B 391 GLU LEU ILE SER ALA ILE SER ALA TYR ARG ILE ALA GLU SEQRES 11 B 391 SER LYS LEU SER GLU VAL GLU ASP GLU ILE GLU LYS ALA SEQRES 12 B 391 GLU PHE PHE PHE LYS VAL SER TYR VAL TYR TYR TYR MET SEQRES 13 B 391 LYS GLN THR TYR PHE SER MET ASN TYR ALA ASN ARG ALA SEQRES 14 B 391 LEU LYS ILE PHE ARG GLU TYR GLU GLU TYR ALA VAL GLN SEQRES 15 B 391 THR VAL ARG CYS GLN PHE ILE VAL ALA GLY ASN LEU ILE SEQRES 16 B 391 ASP SER LEU GLU TYR GLU ARG ALA LEU GLU GLN PHE LEU SEQRES 17 B 391 LYS SER LEU GLU ILE SER LYS GLU SER ASN ILE GLU HIS SEQRES 18 B 391 LEU ILE ALA MET SER HIS MET ASN ILE GLY ILE CYS TYR SEQRES 19 B 391 ASP GLU LEU LYS GLU TYR LYS LYS ALA SER GLN HIS LEU SEQRES 20 B 391 ILE LEU ALA LEU GLU ILE PHE GLU LYS SER LYS HIS SER SEQRES 21 B 391 PHE LEU THR LYS THR LEU PHE THR LEU THR TYR VAL GLU SEQRES 22 B 391 ALA LYS GLN GLN ASN TYR ASN VAL ALA LEU ILE TYR PHE SEQRES 23 B 391 ARG LYS GLY ARG PHE ILE ALA ASP LYS SER ASP ASP LYS SEQRES 24 B 391 GLU TYR SER ALA LYS PHE LYS ILE LEU GLU GLY LEU PHE SEQRES 25 B 391 PHE SER ASP GLY GLU THR GLN LEU ILE LYS ASN ALA PHE SEQRES 26 B 391 SER TYR LEU ALA SER ARG LYS MET PHE ALA ASP VAL GLU SEQRES 27 B 391 ASN PHE SER ILE GLU VAL ALA ASP TYR PHE HIS GLU GLN SEQRES 28 B 391 GLY ASN LEU MET LEU SER ASN GLU TYR TYR ARG MET SER SEQRES 29 B 391 ILE GLU ALA ARG ARG LYS ILE LYS LYS GLY GLU ILE ILE SEQRES 30 B 391 ASP GLU ASN GLN PRO ASP SER ILE GLY SER SER ASP PHE SEQRES 31 B 391 LYS HET CL A 401 1 HET CL B 401 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *26(H2 O) HELIX 1 1 LEU A 101 ARG A 116 1 16 HELIX 2 2 GLU A 118 GLU A 130 1 13 HELIX 3 3 SER A 131 VAL A 136 5 6 HELIX 4 4 ASP A 138 MET A 156 1 19 HELIX 5 5 GLN A 158 ARG A 174 1 17 HELIX 6 6 TYR A 176 GLU A 178 5 3 HELIX 7 7 TYR A 179 SER A 197 1 19 HELIX 8 8 GLU A 199 GLU A 216 1 18 HELIX 9 9 ILE A 219 LEU A 237 1 19 HELIX 10 10 GLU A 239 LYS A 258 1 20 HELIX 11 11 SER A 260 GLN A 276 1 17 HELIX 12 12 ASN A 278 SER A 296 1 19 HELIX 13 13 ASP A 298 PHE A 313 1 16 HELIX 14 14 GLU A 317 ARG A 331 1 15 HELIX 15 15 MET A 333 GLY A 352 1 20 HELIX 16 16 ASN A 353 GLY A 374 1 22 HELIX 17 17 LEU B 15 ASN B 29 1 15 HELIX 18 18 GLN B 31 LEU B 46 1 16 HELIX 19 19 LEU B 47 MET B 49 5 3 HELIX 20 20 ASN B 52 SER B 71 1 20 HELIX 21 21 GLU B 79 GLN B 94 1 16 HELIX 22 22 THR B 98 ARG B 116 1 19 HELIX 23 23 GLU B 118 LYS B 132 1 15 HELIX 24 24 LEU B 133 VAL B 136 5 4 HELIX 25 25 ASP B 138 MET B 156 1 19 HELIX 26 26 GLN B 158 ARG B 174 1 17 HELIX 27 27 TYR B 179 SER B 197 1 19 HELIX 28 28 GLU B 199 SER B 217 1 19 HELIX 29 29 ILE B 219 LEU B 237 1 19 HELIX 30 30 GLU B 239 GLU B 255 1 17 HELIX 31 31 SER B 260 LYS B 275 1 16 HELIX 32 32 ASN B 278 LYS B 295 1 18 HELIX 33 33 GLU B 300 PHE B 313 1 14 HELIX 34 34 THR B 318 ARG B 331 1 14 HELIX 35 35 MET B 333 GLY B 352 1 20 HELIX 36 36 ASN B 353 LYS B 373 1 21 SITE 1 AC1 4 ASN A 278 TYR A 279 ASN A 280 VAL A 281 SITE 1 AC2 3 MET B 333 ALA B 335 ASP B 336 CRYST1 132.897 141.209 50.532 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019789 0.00000