HEADER FLUORESCENT PROTEIN 26-NOV-12 4I3D TITLE CRYSTAL STRUCTURE OF FLUORESCENT PROTEIN UNAG N57A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILIRUBIN-INDUCIBLE FLUORESCENT PROTEIN UNAG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UNAGI GREEN FLUORESCENT PROTEIN, UNAG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANGUILLA JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE EEL; SOURCE 4 ORGANISM_TAXID: 7937; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS FLUORESCENT PROTEIN, BILIRUBIN BINDING PROTEIN, LIPOCALIN, BETA KEYWDS 2 BARREL, CYTOSOL EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAGAI,R.ANDO,H.MIYATAKE,A.MIYAWAKI REVDAT 4 08-NOV-23 4I3D 1 REMARK SEQADV REVDAT 3 04-FEB-15 4I3D 1 COMPND DBREF FORMUL HETATM REVDAT 3 2 1 HETNAM HETSYN SEQADV REVDAT 2 31-JUL-13 4I3D 1 JRNL REVDAT 1 19-JUN-13 4I3D 0 JRNL AUTH A.KUMAGAI,R.ANDO,H.MIYATAKE,P.GREIMEL,T.KOBAYASHI, JRNL AUTH 2 Y.HIRABAYASHI,T.SHIMOGORI,A.MIYAWAKI JRNL TITL A BILIRUBIN-INDUCIBLE FLUORESCENT PROTEIN FROM EEL MUSCLE JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1602 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23768684 JRNL DOI 10.1016/J.CELL.2013.05.038 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.3632 - 4.7500 0.95 2536 133 0.1228 0.1364 REMARK 3 2 4.7500 - 3.7830 0.95 2540 138 0.0956 0.1201 REMARK 3 3 3.7830 - 3.3086 0.95 2506 136 0.1083 0.1513 REMARK 3 4 3.3086 - 3.0078 0.95 2576 128 0.1227 0.1523 REMARK 3 5 3.0078 - 2.7931 0.94 2533 148 0.1400 0.1779 REMARK 3 6 2.7931 - 2.6291 0.94 2483 155 0.1414 0.2075 REMARK 3 7 2.6291 - 2.4978 0.96 2564 117 0.1440 0.2131 REMARK 3 8 2.4978 - 2.3893 0.95 2568 129 0.1696 0.2671 REMARK 3 9 2.3893 - 2.2976 0.95 2517 123 0.1718 0.2311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4640 REMARK 3 ANGLE : 1.256 6272 REMARK 3 CHIRALITY : 0.069 672 REMARK 3 PLANARITY : 0.005 784 REMARK 3 DIHEDRAL : 17.842 1780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.1_1168 REMARK 200 STARTING MODEL: 4I3B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, 30%W/V POLYETHYLENE GLYCOL 8000, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.67733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.35467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 62 HZ1 LYS D 84 1.37 REMARK 500 HD22 ASN D 16 OE2 GLU D 19 1.49 REMARK 500 OD1 ASP C 76 HZ3 LYS C 87 1.53 REMARK 500 HG1 THR B 61 O HOH B 315 1.53 REMARK 500 HZ1 LYS B 96 O HOH B 444 1.58 REMARK 500 HZ3 LYS B 28 OD2 ASP B 32 1.58 REMARK 500 OE1 GLN B 45 H GLY B 48 1.58 REMARK 500 HD1 HIS A 15 O HOH A 334 1.58 REMARK 500 O HOH C 428 O HOH C 432 1.66 REMARK 500 O HOH D 403 O HOH D 412 1.71 REMARK 500 O HOH B 387 O HOH B 417 1.72 REMARK 500 O HOH A 410 O HOH A 438 1.72 REMARK 500 O HOH D 425 O HOH D 431 1.73 REMARK 500 O HOH A 323 O HOH A 420 1.74 REMARK 500 O HOH A 344 O HOH A 383 1.77 REMARK 500 O HOH B 335 O HOH D 347 1.79 REMARK 500 O HOH B 455 O HOH B 461 1.79 REMARK 500 O HOH B 426 O HOH B 438 1.80 REMARK 500 O ALA B 57 O HOH B 384 1.81 REMARK 500 O HOH B 325 O HOH D 426 1.82 REMARK 500 O HOH D 356 O HOH D 442 1.83 REMARK 500 O HOH C 355 O HOH C 436 1.86 REMARK 500 O HOH C 369 O HOH C 403 1.88 REMARK 500 O HOH C 386 O HOH C 393 1.89 REMARK 500 O HOH A 386 O HOH A 391 1.89 REMARK 500 O HOH A 392 O HOH A 450 1.90 REMARK 500 O HOH D 329 O HOH D 387 1.90 REMARK 500 OD1 ASP A 127 O HOH A 387 1.92 REMARK 500 O THR C 38 O HOH C 365 1.92 REMARK 500 OE1 GLU D 3 O HOH D 404 1.93 REMARK 500 O HOH D 327 O HOH D 341 1.94 REMARK 500 O HOH C 321 O HOH C 343 1.94 REMARK 500 O HOH A 325 O HOH A 340 1.94 REMARK 500 O HOH B 343 O HOH B 345 1.94 REMARK 500 O HOH B 455 O HOH B 462 1.94 REMARK 500 O ARG C 136 O HOH C 352 1.95 REMARK 500 O HOH A 389 O HOH A 449 1.96 REMARK 500 O ARG B 83 O HOH B 437 1.96 REMARK 500 O HOH C 358 O HOH C 375 1.96 REMARK 500 NZ LYS A 68 O HOH A 330 1.96 REMARK 500 O HOH D 383 O HOH D 411 1.96 REMARK 500 O GLY A 126 O HOH A 324 1.97 REMARK 500 O HOH A 445 O HOH A 463 1.98 REMARK 500 O HOH B 321 O HOH B 381 1.98 REMARK 500 O PHE B 62 NZ LYS D 84 1.98 REMARK 500 O GLU A 139 O HOH A 432 1.99 REMARK 500 O LEU D 63 O HOH D 415 2.00 REMARK 500 O GLY C 126 O HOH C 327 2.01 REMARK 500 O HOH C 322 O HOH C 360 2.01 REMARK 500 NZ LYS A 4 O HOH A 367 2.01 REMARK 500 REMARK 500 THIS ENTRY HAS 95 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS B 4 O HOH C 432 1445 1.38 REMARK 500 HZ3 LYS B 4 O HOH C 432 1445 1.47 REMARK 500 HE21 GLN C 45 O HOH B 460 1665 1.56 REMARK 500 HZ1 LYS A 28 OD1 ASP B 127 3454 1.58 REMARK 500 O HOH B 474 O HOH C 428 1445 1.66 REMARK 500 O HOH C 426 O HOH D 400 3564 1.68 REMARK 500 NZ LYS B 4 O HOH C 432 1445 1.74 REMARK 500 O HOH A 380 O HOH D 430 3554 1.77 REMARK 500 OD1 ASP C 116 O HOH B 429 3564 1.79 REMARK 500 OE2 GLU A 107 O HOH C 425 2665 1.87 REMARK 500 NZ LYS A 10 O HOH A 450 3454 1.88 REMARK 500 O HOH C 396 O HOH D 419 3554 1.94 REMARK 500 O GLU D 3 O HOH A 428 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 27 152.44 -46.63 REMARK 500 ARG A 82 56.18 72.95 REMARK 500 ASP A 116 63.55 34.90 REMARK 500 ASP B 47 31.23 82.13 REMARK 500 ASP B 49 14.53 -151.44 REMARK 500 GLN B 66 127.63 -172.11 REMARK 500 TRP B 103 136.37 -170.99 REMARK 500 THR B 138 -141.24 -130.51 REMARK 500 ALA C 12 -48.65 -130.28 REMARK 500 ASP C 47 -0.36 62.24 REMARK 500 PHE C 62 36.46 71.07 REMARK 500 LEU C 71 108.73 -58.31 REMARK 500 ASP D 49 -2.77 -140.79 REMARK 500 ASP D 104 54.83 32.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLR A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLR B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLR C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLR D 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I3B RELATED DB: PDB REMARK 900 RELATED ID: 4I3C RELATED DB: PDB DBREF 4I3D A 1 139 UNP P0DM59 UNAG_ANGJA 1 139 DBREF 4I3D B 1 139 UNP P0DM59 UNAG_ANGJA 1 139 DBREF 4I3D C 1 139 UNP P0DM59 UNAG_ANGJA 1 139 DBREF 4I3D D 1 139 UNP P0DM59 UNAG_ANGJA 1 139 SEQADV 4I3D ALA A 57 UNP P0DM59 ASN 57 ENGINEERED MUTATION SEQADV 4I3D ALA B 57 UNP P0DM59 ASN 57 ENGINEERED MUTATION SEQADV 4I3D ALA C 57 UNP P0DM59 ASN 57 ENGINEERED MUTATION SEQADV 4I3D ALA D 57 UNP P0DM59 ASN 57 ENGINEERED MUTATION SEQRES 1 A 139 MET VAL GLU LYS PHE VAL GLY THR TRP LYS ILE ALA ASP SEQRES 2 A 139 SER HIS ASN PHE GLY GLU TYR LEU LYS ALA ILE GLY ALA SEQRES 3 A 139 PRO LYS GLU LEU SER ASP GLY GLY ASP ALA THR THR PRO SEQRES 4 A 139 THR LEU TYR ILE SER GLN LYS ASP GLY ASP LYS MET THR SEQRES 5 A 139 VAL LYS ILE GLU ALA GLY PRO PRO THR PHE LEU ASP THR SEQRES 6 A 139 GLN VAL LYS PHE LYS LEU GLY GLU GLU PHE ASP GLU PHE SEQRES 7 A 139 PRO SER ASP ARG ARG LYS GLY VAL LYS SER VAL VAL ASN SEQRES 8 A 139 LEU VAL GLY GLU LYS LEU VAL TYR VAL GLN LYS TRP ASP SEQRES 9 A 139 GLY LYS GLU THR THR TYR VAL ARG GLU ILE LYS ASP GLY SEQRES 10 A 139 LYS LEU VAL VAL THR LEU THR MET GLY ASP VAL VAL ALA SEQRES 11 A 139 VAL ARG SER TYR ARG ARG ALA THR GLU SEQRES 1 B 139 MET VAL GLU LYS PHE VAL GLY THR TRP LYS ILE ALA ASP SEQRES 2 B 139 SER HIS ASN PHE GLY GLU TYR LEU LYS ALA ILE GLY ALA SEQRES 3 B 139 PRO LYS GLU LEU SER ASP GLY GLY ASP ALA THR THR PRO SEQRES 4 B 139 THR LEU TYR ILE SER GLN LYS ASP GLY ASP LYS MET THR SEQRES 5 B 139 VAL LYS ILE GLU ALA GLY PRO PRO THR PHE LEU ASP THR SEQRES 6 B 139 GLN VAL LYS PHE LYS LEU GLY GLU GLU PHE ASP GLU PHE SEQRES 7 B 139 PRO SER ASP ARG ARG LYS GLY VAL LYS SER VAL VAL ASN SEQRES 8 B 139 LEU VAL GLY GLU LYS LEU VAL TYR VAL GLN LYS TRP ASP SEQRES 9 B 139 GLY LYS GLU THR THR TYR VAL ARG GLU ILE LYS ASP GLY SEQRES 10 B 139 LYS LEU VAL VAL THR LEU THR MET GLY ASP VAL VAL ALA SEQRES 11 B 139 VAL ARG SER TYR ARG ARG ALA THR GLU SEQRES 1 C 139 MET VAL GLU LYS PHE VAL GLY THR TRP LYS ILE ALA ASP SEQRES 2 C 139 SER HIS ASN PHE GLY GLU TYR LEU LYS ALA ILE GLY ALA SEQRES 3 C 139 PRO LYS GLU LEU SER ASP GLY GLY ASP ALA THR THR PRO SEQRES 4 C 139 THR LEU TYR ILE SER GLN LYS ASP GLY ASP LYS MET THR SEQRES 5 C 139 VAL LYS ILE GLU ALA GLY PRO PRO THR PHE LEU ASP THR SEQRES 6 C 139 GLN VAL LYS PHE LYS LEU GLY GLU GLU PHE ASP GLU PHE SEQRES 7 C 139 PRO SER ASP ARG ARG LYS GLY VAL LYS SER VAL VAL ASN SEQRES 8 C 139 LEU VAL GLY GLU LYS LEU VAL TYR VAL GLN LYS TRP ASP SEQRES 9 C 139 GLY LYS GLU THR THR TYR VAL ARG GLU ILE LYS ASP GLY SEQRES 10 C 139 LYS LEU VAL VAL THR LEU THR MET GLY ASP VAL VAL ALA SEQRES 11 C 139 VAL ARG SER TYR ARG ARG ALA THR GLU SEQRES 1 D 139 MET VAL GLU LYS PHE VAL GLY THR TRP LYS ILE ALA ASP SEQRES 2 D 139 SER HIS ASN PHE GLY GLU TYR LEU LYS ALA ILE GLY ALA SEQRES 3 D 139 PRO LYS GLU LEU SER ASP GLY GLY ASP ALA THR THR PRO SEQRES 4 D 139 THR LEU TYR ILE SER GLN LYS ASP GLY ASP LYS MET THR SEQRES 5 D 139 VAL LYS ILE GLU ALA GLY PRO PRO THR PHE LEU ASP THR SEQRES 6 D 139 GLN VAL LYS PHE LYS LEU GLY GLU GLU PHE ASP GLU PHE SEQRES 7 D 139 PRO SER ASP ARG ARG LYS GLY VAL LYS SER VAL VAL ASN SEQRES 8 D 139 LEU VAL GLY GLU LYS LEU VAL TYR VAL GLN LYS TRP ASP SEQRES 9 D 139 GLY LYS GLU THR THR TYR VAL ARG GLU ILE LYS ASP GLY SEQRES 10 D 139 LYS LEU VAL VAL THR LEU THR MET GLY ASP VAL VAL ALA SEQRES 11 D 139 VAL ARG SER TYR ARG ARG ALA THR GLU HET BLR A 200 75 HET BLR B 200 75 HET BLR C 200 75 HET BLR D 200 75 HETNAM BLR 3-[5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2- HETNAM 2 BLR YLIDENE)METHYL]-2-[[5-[(Z)-(3-ETHENYL-4-METHYL-5- HETNAM 3 BLR OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-3-(3-HYDROXY-3- HETNAM 4 BLR OXOPROPYL)-4-METHYL-1H-PYRROL-2-YL]METHYL]-4-METHYL- HETNAM 5 BLR 1H-PYRROL-3-YL]PROPANOIC ACID HETSYN BLR BILIRUBIN IX ALPHA FORMUL 5 BLR 4(C33 H36 N4 O6) FORMUL 9 HOH *636(H2 O) HELIX 1 1 VAL A 2 VAL A 6 5 5 HELIX 2 2 ASN A 16 ILE A 24 1 9 HELIX 3 3 PRO A 27 ASP A 32 1 6 HELIX 4 4 GLY A 33 THR A 37 5 5 HELIX 5 5 MET B 1 PHE B 5 5 5 HELIX 6 6 ASN B 16 ILE B 24 1 9 HELIX 7 7 PRO B 27 ASP B 32 1 6 HELIX 8 8 MET C 1 PHE C 5 5 5 HELIX 9 9 ASN C 16 ILE C 24 1 9 HELIX 10 10 PRO C 27 ASP C 32 1 6 HELIX 11 11 GLY C 33 THR C 37 5 5 HELIX 12 12 MET D 1 VAL D 6 5 6 HELIX 13 13 ASN D 16 ILE D 24 1 9 HELIX 14 14 PRO D 27 ASP D 32 1 6 HELIX 15 15 GLY D 33 THR D 37 5 5 SHEET 1 A10 THR A 65 LYS A 70 0 SHEET 2 A10 LYS A 50 GLU A 56 -1 N ILE A 55 O THR A 65 SHEET 3 A10 THR A 40 LYS A 46 -1 N THR A 40 O GLU A 56 SHEET 4 A10 GLY A 7 HIS A 15 -1 N GLY A 7 O ILE A 43 SHEET 5 A10 VAL A 128 ARG A 136 -1 O VAL A 131 N HIS A 15 SHEET 6 A10 LYS A 118 MET A 125 -1 N VAL A 121 O ARG A 132 SHEET 7 A10 LYS A 106 LYS A 115 -1 N THR A 109 O THR A 124 SHEET 8 A10 LYS A 96 TRP A 103 -1 N TYR A 99 O TYR A 110 SHEET 9 A10 LYS A 87 VAL A 93 -1 N ASN A 91 O VAL A 98 SHEET 10 A10 PHE A 75 ASP A 76 -1 N PHE A 75 O SER A 88 SHEET 1 B10 THR B 65 LYS B 70 0 SHEET 2 B10 LYS B 50 GLU B 56 -1 N VAL B 53 O VAL B 67 SHEET 3 B10 THR B 40 GLN B 45 -1 N THR B 40 O GLU B 56 SHEET 4 B10 GLY B 7 HIS B 15 -1 N GLY B 7 O ILE B 43 SHEET 5 B10 VAL B 128 ARG B 136 -1 O SER B 133 N ASP B 13 SHEET 6 B10 LYS B 118 MET B 125 -1 N VAL B 121 O ARG B 132 SHEET 7 B10 LYS B 106 LYS B 115 -1 N VAL B 111 O THR B 122 SHEET 8 B10 LYS B 96 TRP B 103 -1 N GLN B 101 O THR B 108 SHEET 9 B10 VAL B 86 VAL B 93 -1 N ASN B 91 O VAL B 98 SHEET 10 B10 PHE B 75 GLU B 77 -1 N PHE B 75 O SER B 88 SHEET 1 C10 THR C 65 LYS C 70 0 SHEET 2 C10 LYS C 50 GLU C 56 -1 N MET C 51 O PHE C 69 SHEET 3 C10 THR C 40 LYS C 46 -1 N THR C 40 O GLU C 56 SHEET 4 C10 GLY C 7 HIS C 15 -1 N GLY C 7 O ILE C 43 SHEET 5 C10 VAL C 128 ARG C 136 -1 O SER C 133 N ASP C 13 SHEET 6 C10 LYS C 118 MET C 125 -1 N VAL C 121 O ARG C 132 SHEET 7 C10 LYS C 106 LYS C 115 -1 N LYS C 115 O LYS C 118 SHEET 8 C10 LYS C 96 TRP C 103 -1 N LEU C 97 O ARG C 112 SHEET 9 C10 LYS C 87 VAL C 93 -1 N VAL C 89 O VAL C 100 SHEET 10 C10 PHE C 75 ASP C 76 -1 N PHE C 75 O SER C 88 SHEET 1 D10 ASP D 64 LYS D 70 0 SHEET 2 D10 LYS D 50 GLU D 56 -1 N MET D 51 O PHE D 69 SHEET 3 D10 THR D 40 LYS D 46 -1 N THR D 40 O GLU D 56 SHEET 4 D10 GLY D 7 HIS D 15 -1 N GLY D 7 O ILE D 43 SHEET 5 D10 VAL D 128 ARG D 136 -1 O SER D 133 N ASP D 13 SHEET 6 D10 LYS D 118 MET D 125 -1 N VAL D 121 O ARG D 132 SHEET 7 D10 LYS D 106 LYS D 115 -1 N VAL D 111 O THR D 122 SHEET 8 D10 LYS D 96 TRP D 103 -1 N TYR D 99 O TYR D 110 SHEET 9 D10 LYS D 87 VAL D 93 -1 N ASN D 91 O VAL D 98 SHEET 10 D10 PHE D 75 ASP D 76 -1 N PHE D 75 O SER D 88 CISPEP 1 PRO A 59 PRO A 60 0 -6.33 CISPEP 2 ALA A 137 THR A 138 0 -10.37 CISPEP 3 PRO B 59 PRO B 60 0 1.36 CISPEP 4 PRO C 59 PRO C 60 0 -6.31 CISPEP 5 THR C 138 GLU C 139 0 0.73 CISPEP 6 PRO D 59 PRO D 60 0 -0.01 SITE 1 AC1 17 LEU A 21 THR A 37 LEU A 41 ILE A 55 SITE 2 AC1 17 THR A 65 PRO A 79 SER A 80 LEU A 97 SITE 3 AC1 17 ARG A 112 LEU A 119 ARG A 132 TYR A 134 SITE 4 AC1 17 HOH A 301 HOH A 304 HOH A 313 HOH A 316 SITE 5 AC1 17 HOH A 352 SITE 1 AC2 18 PHE B 17 LEU B 30 THR B 37 LEU B 41 SITE 2 AC2 18 ILE B 43 ILE B 55 VAL B 67 PRO B 79 SITE 3 AC2 18 SER B 80 ARG B 112 LEU B 119 TYR B 134 SITE 4 AC2 18 HOH B 304 HOH B 306 HOH B 308 HOH B 328 SITE 5 AC2 18 HOH B 329 HOH B 339 SITE 1 AC3 16 PHE C 17 LEU C 21 LEU C 41 ILE C 43 SITE 2 AC3 16 MET C 51 ILE C 55 ALA C 57 VAL C 67 SITE 3 AC3 16 PRO C 79 SER C 80 ARG C 112 LEU C 119 SITE 4 AC3 16 ARG C 132 TYR C 134 HOH C 306 HOH C 325 SITE 1 AC4 21 PHE D 17 LEU D 21 LEU D 30 LEU D 41 SITE 2 AC4 21 ILE D 43 MET D 51 VAL D 53 ILE D 55 SITE 3 AC4 21 ALA D 57 VAL D 67 PRO D 79 SER D 80 SITE 4 AC4 21 ARG D 112 LEU D 119 ARG D 132 TYR D 134 SITE 5 AC4 21 HOH D 316 HOH D 328 HOH D 372 HOH D 406 SITE 6 AC4 21 HOH D 407 CRYST1 73.702 73.702 89.032 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013568 0.007834 0.000000 0.00000 SCALE2 0.000000 0.015667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011232 0.00000